RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 KCNS1Q96KK3 526 aa20.99■□□□□ 0.95
USP42-202ENST00000404008 C9JCJ5 164 aa20.98■□□□□ 0.95
USP42-202ENST00000404008 IBA57Q5T440 356 aaKnown RBP20.98■□□□□ 0.95
USP42-202ENST00000404008 C11orf45Q8TAV5 145 aa20.98■□□□□ 0.95
USP42-202ENST00000404008 DKK2Q9UBU2 259 aa20.98■□□□□ 0.95
USP42-202ENST00000404008 PGPEP1LA6NFU8 196 aa20.97■□□□□ 0.95
USP42-202ENST00000404008 FAM222AQ5U5X8 452 aa20.97■□□□□ 0.95
USP42-202ENST00000404008 SDF2L1Q9HCN8 221 aa20.97■□□□□ 0.95
USP42-202ENST00000404008 GSN-AS1Q9NRJ2 163 aa20.97■□□□□ 0.95
USP42-202ENST00000404008 TIMM8BQ9Y5J9 83 aaPredicted RBP20.97■□□□□ 0.95
USP42-202ENST00000404008 TRGV11A0A075B6L2 103 aa20.97■□□□□ 0.95
USP42-202ENST00000404008 SPART-AS1P0CW21 52 aa20.97■□□□□ 0.95
USP42-202ENST00000404008 CXorf65A6NEN9 183 aa20.96■□□□□ 0.95
USP42-202ENST00000404008 SNURFLB1AK76 121 aa20.96■□□□□ 0.95
USP42-202ENST00000404008 GNRH2O43555 120 aa20.96■□□□□ 0.95
USP42-202ENST00000404008 TYMSP04818 313 aa20.96■□□□□ 0.95
USP42-202ENST00000404008 CSMD3Q7Z407 3707 aa20.95■□□□□ 0.94
USP42-202ENST00000404008 IGKV3D-20A0A0C4DH25 116 aa20.95■□□□□ 0.94
USP42-202ENST00000404008 TEX48A0A1B0GUV7 120 aa20.95■□□□□ 0.94
USP42-202ENST00000404008 MGST1P10620 155 aaKnown RBP20.95■□□□□ 0.94
USP42-202ENST00000404008 TCL1AP56279 114 aa20.95■□□□□ 0.94
USP42-202ENST00000404008 PRR27Q6MZM9 219 aa20.95■□□□□ 0.94
USP42-202ENST00000404008 NOP10Q9NPE3 64 aaKnown RBP20.95■□□□□ 0.94
USP42-202ENST00000404008 MDFICQ9P1T7 246 aa20.95■□□□□ 0.94
USP42-202ENST00000404008 LYRM9A8MSI8 78 aa20.94■□□□□ 0.94
USP42-202ENST00000404008 ORM1P02763 201 aa20.94■□□□□ 0.94
USP42-202ENST00000404008 NANOS2P60321 138 aaKnown RBP20.94■□□□□ 0.94
USP42-202ENST00000404008 ZNF415Q09FC8 603 aa20.94■□□□□ 0.94
USP42-202ENST00000404008 DAZ2Q13117 558 aaKnown RBP20.94■□□□□ 0.94
USP42-202ENST00000404008 SMIM7Q9BQ49 75 aa20.94■□□□□ 0.94
USP42-202ENST00000404008 IGHV3-16A0A0C4DH30 117 aa20.93■□□□□ 0.94
USP42-202ENST00000404008 KRBOX1C9JBD0 128 aa20.92■□□□□ 0.94
USP42-202ENST00000404008 OCC1Q8TAD7 63 aa20.92■□□□□ 0.94
USP42-202ENST00000404008 ZNF727A8MUV8 499 aa20.91■□□□□ 0.94
USP42-202ENST00000404008 B4DEV8 164 aa20.91■□□□□ 0.94
USP42-202ENST00000404008 M0R036 132 aa20.91■□□□□ 0.94
USP42-202ENST00000404008 C12orf74Q32Q52 190 aa20.91■□□□□ 0.94
USP42-202ENST00000404008 LINC01559Q495D7 138 aa20.91■□□□□ 0.94
USP42-202ENST00000404008 BIN3Q9NQY0 253 aa20.9■□□□□ 0.94
USP42-202ENST00000404008 K7EN84 100 aa20.89■□□□□ 0.93
USP42-202ENST00000404008 FAM74A3Q4VXF1 159 aa20.89■□□□□ 0.93
USP42-202ENST00000404008 MUC7Q8TAX7 377 aa20.89■□□□□ 0.93
USP42-202ENST00000404008 OR5I1Q13606 314 aa20.88■□□□□ 0.93
USP42-202ENST00000404008 ZNF575Q86XF7 245 aa20.88■□□□□ 0.93
USP42-202ENST00000404008 LY96Q9Y6Y9 160 aa20.88■□□□□ 0.93
USP42-202ENST00000404008 C19orf71A6NCJ1 209 aa20.87■□□□□ 0.93
USP42-202ENST00000404008 SPINK4O60575 86 aa20.86■□□□□ 0.93
USP42-202ENST00000404008 DAD1P61803 113 aa20.86■□□□□ 0.93
USP42-202ENST00000404008 Q6ZTC4 211 aa20.86■□□□□ 0.93
USP42-202ENST00000404008 LINC00612Q8N6U2 182 aa20.86■□□□□ 0.93
USP42-202ENST00000404008 SPXQ9BT56 116 aa20.86■□□□□ 0.93
USP42-202ENST00000404008 TMSB15BA0A087X1C1 80 aa20.85■□□□□ 0.93
USP42-202ENST00000404008 DEFB130BP0DP73 79 aa20.85■□□□□ 0.93
USP42-202ENST00000404008 DEFB130AP0DP74 79 aa20.85■□□□□ 0.93
USP42-202ENST00000404008 RPL19P84098 196 aaKnown RBP20.85■□□□□ 0.93
USP42-202ENST00000404008 DAZAP1Q96EP5 407 aaKnown RBP20.85■□□□□ 0.93
USP42-202ENST00000404008 RNASE3P12724 160 aaKnown RBP20.85■□□□□ 0.93
USP42-202ENST00000404008 ASIPP42127 132 aa20.85■□□□□ 0.93
USP42-202ENST00000404008 SOHLH1Q5JUK2 328 aa20.85■□□□□ 0.93
USP42-202ENST00000404008 DNLZQ5SXM8 178 aa20.85■□□□□ 0.93
USP42-202ENST00000404008 Q6ZTI0 123 aa20.85■□□□□ 0.93
USP42-202ENST00000404008 LINC01551Q86U37 167 aa20.85■□□□□ 0.93
USP42-202ENST00000404008 LGALS9BQ3B8N2 356 aa20.84■□□□□ 0.93
USP42-202ENST00000404008 C9orf85Q96MD7 179 aa20.84■□□□□ 0.93
USP42-202ENST00000404008 TRGV1A0A0A0MS02 117 aa20.83■□□□□ 0.92
USP42-202ENST00000404008 GAGE12BA1L429 117 aa20.83■□□□□ 0.92
USP42-202ENST00000404008 GRIFINA4D1Z8 144 aa20.83■□□□□ 0.92
USP42-202ENST00000404008 GAGE7O76087 117 aa20.83■□□□□ 0.92
USP42-202ENST00000404008 GAGE12FP0CL80 117 aa20.83■□□□□ 0.92
USP42-202ENST00000404008 GAGE12GP0CL81 117 aa20.83■□□□□ 0.92
USP42-202ENST00000404008 GAGE12IP0CL82 117 aa20.83■□□□□ 0.92
USP42-202ENST00000404008 LINC00862A6NCI5 91 aa20.82■□□□□ 0.92
USP42-202ENST00000404008 SFTA3P0C7M3 94 aa20.82■□□□□ 0.92
USP42-202ENST00000404008 S100A4P26447 101 aaKnown RBP20.82■□□□□ 0.92
USP42-202ENST00000404008 TMEM241Q24JQ0 296 aa20.82■□□□□ 0.92
USP42-202ENST00000404008 MRPL16Q9NX20 251 aaKnown RBP20.82■□□□□ 0.92
USP42-202ENST00000404008 P01737 135 aa20.81■□□□□ 0.92
USP42-202ENST00000404008 CXCL1P09341 107 aa20.81■□□□□ 0.92
USP42-202ENST00000404008 UQCC3Q6UW78 93 aa20.81■□□□□ 0.92
USP42-202ENST00000404008 COMMD7Q86VX2 200 aa20.81■□□□□ 0.92
USP42-202ENST00000404008 NUDT10Q8NFP7 164 aa20.81■□□□□ 0.92
USP42-202ENST00000404008 PHLDA1Q8WV24 401 aaPredicted RBP20.81■□□□□ 0.92
USP42-202ENST00000404008 NUDT11Q96G61 164 aa20.81■□□□□ 0.92
USP42-202ENST00000404008 RNASE7Q9H1E1 156 aaKnown RBP20.81■□□□□ 0.92
USP42-202ENST00000404008 IL36BQ9NZH7 164 aa20.81■□□□□ 0.92
USP42-202ENST00000404008 NAT8Q9UHE5 227 aa20.81■□□□□ 0.92
USP42-202ENST00000404008 STARD9Q9P2P6 4700 aa20.8■□□□□ 0.92
USP42-202ENST00000404008 MUC4Q99102 2169 aa20.8■□□□□ 0.92
USP42-202ENST00000404008 M0R2P5 195 aa20.8■□□□□ 0.92
USP42-202ENST00000404008 H3BVH4 76 aa20.79■□□□□ 0.92
USP42-202ENST00000404008 C3orf84H3BNL1 204 aa20.78■□□□□ 0.92
USP42-202ENST00000404008 ZFAND6Q6FIF0 208 aa20.78■□□□□ 0.92
USP42-202ENST00000404008 OR2D3Q8NGH3 330 aa20.78■□□□□ 0.92
USP42-202ENST00000404008 RASL10AQ92737 203 aa20.78■□□□□ 0.92
USP42-202ENST00000404008 C18orf15Q96N68 181 aa20.78■□□□□ 0.92
USP42-202ENST00000404008 DYNC2H1Q8NCM8 4307 aaKnown RBP20.78■□□□□ 0.92
USP42-202ENST00000404008 TRAV10A0A0B4J240 114 aa20.77■□□□□ 0.92
USP42-202ENST00000404008 ARMS2P0C7Q2 107 aa20.77■□□□□ 0.92
USP42-202ENST00000404008 RPL23P62829 140 aaKnown RBP20.77■□□□□ 0.92
USP42-202ENST00000404008 FAM231DQ6ZW35 169 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms