RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 THYN1Q9P016 225 aa8.9□□□□□ -0.98
USF1-201ENST00000368019 VWFP04275 2813 aa8.9□□□□□ -0.99
USF1-201ENST00000368019 TMEM213A2RRL7 107 aa8.89□□□□□ -0.99
USF1-201ENST00000368019 M0R1W7 72 aa8.89□□□□□ -0.99
USF1-201ENST00000368019 CNIH1O95406 144 aa8.89□□□□□ -0.99
USF1-201ENST00000368019 NPYP01303 97 aa8.89□□□□□ -0.99
USF1-201ENST00000368019 PPIAL4GP0DN37 164 aa8.89□□□□□ -0.99
USF1-201ENST00000368019 LHFPL4Q7Z7J7 247 aa8.89□□□□□ -0.99
USF1-201ENST00000368019 MCRIP2Q9BUT9 160 aaKnown RBP8.89□□□□□ -0.99
USF1-201ENST00000368019 MEGF9Q9H1U4 602 aa8.89□□□□□ -0.99
USF1-201ENST00000368019 DPM3Q9P2X0 92 aa8.89□□□□□ -0.99
USF1-201ENST00000368019 H3BUT2 72 aa8.88□□□□□ -0.99
USF1-201ENST00000368019 M0R3E3 92 aa8.88□□□□□ -0.99
USF1-201ENST00000368019 FAM106CPP0CH98 169 aa8.88□□□□□ -0.99
USF1-201ENST00000368019 SMIM13P0DJ93 91 aa8.88□□□□□ -0.99
USF1-201ENST00000368019 SCGB1A1P11684 91 aa8.88□□□□□ -0.99
USF1-201ENST00000368019 ODF1Q14990 250 aa8.88□□□□□ -0.99
USF1-201ENST00000368019 FAM106AQ4KMX7 169 aa8.88□□□□□ -0.99
USF1-201ENST00000368019 KLF17Q5JT82 389 aaPredicted RBP8.88□□□□□ -0.99
USF1-201ENST00000368019 MRPL53Q96EL3 112 aaKnown RBP8.88□□□□□ -0.99
USF1-201ENST00000368019 RNF185Q96GF1 192 aa8.88□□□□□ -0.99
USF1-201ENST00000368019 FANCD2OSQ96PS1 177 aa8.88□□□□□ -0.99
USF1-201ENST00000368019 TM2D2Q9BX73 214 aa8.88□□□□□ -0.99
USF1-201ENST00000368019 SPCS1Q9Y6A9 102 aa8.88□□□□□ -0.99
USF1-201ENST00000368019 FABP5P3A8MUU1 101 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 ODF3BA8MYP8 253 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 ZNF207O43670 478 aaKnown RBP8.87□□□□□ -0.99
USF1-201ENST00000368019 EGR2P11161 476 aaPredicted RBP8.87□□□□□ -0.99
USF1-201ENST00000368019 FABP2P12104 132 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 PRTN3P24158 256 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 EBI3Q14213 229 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 C5orf64Q2M2E5 130 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 SHISA2Q6UWI4 295 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 ZNF562Q6V9R5 426 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 ERASQ7Z444 233 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 Q8N8P6 123 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 ASCL2Q99929 193 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 SLC50A1Q9BRV3 221 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 C21orf62Q9NYP8 219 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 WNK1Q9H4A3 2382 aa8.87□□□□□ -0.99
USF1-201ENST00000368019 LOC389332A0A1B0GUA5 103 aa8.86□□□□□ -0.99
USF1-201ENST00000368019 F8W735 103 aaPredicted RBP8.86□□□□□ -0.99
USF1-201ENST00000368019 TIMM23O14925 209 aa8.86□□□□□ -0.99
USF1-201ENST00000368019 APELAP0DMC3 54 aa8.86□□□□□ -0.99
USF1-201ENST00000368019 TWIST1Q15672 202 aa8.86□□□□□ -0.99
USF1-201ENST00000368019 CCDC144NLQ6NUI1 221 aa8.86□□□□□ -0.99
USF1-201ENST00000368019 BCL6BQ8N143 479 aaPredicted RBP8.86□□□□□ -0.99
USF1-201ENST00000368019 ARPC1AQ92747 370 aa8.86□□□□□ -0.99
USF1-201ENST00000368019 TIMM8BQ9Y5J9 83 aaPredicted RBP8.86□□□□□ -0.99
USF1-201ENST00000368019 NOTCH1P46531 2555 aa8.86□□□□□ -0.99
USF1-201ENST00000368019 IGHV4-4A0A075B6R2 117 aa8.85□□□□□ -0.99
USF1-201ENST00000368019 DNAJC9-AS1A6NH13 148 aa8.85□□□□□ -0.99
USF1-201ENST00000368019 DPM2O94777 84 aa8.85□□□□□ -0.99
USF1-201ENST00000368019 IGKCP01834 107 aa8.85□□□□□ -0.99
USF1-201ENST00000368019 MINOS1Q5TGZ0 78 aa8.85□□□□□ -0.99
USF1-201ENST00000368019 C1orf122Q6ZSJ8 110 aa8.85□□□□□ -0.99
USF1-201ENST00000368019 Q8N6K4 173 aa8.85□□□□□ -0.99
USF1-201ENST00000368019 TPPP3Q9BW30 176 aa8.85□□□□□ -0.99
USF1-201ENST00000368019 HHLA3Q9XRX5 114 aa8.85□□□□□ -0.99
USF1-201ENST00000368019 MINOS1-NBL1R4GNA1 71 aa8.85□□□□□ -0.99
USF1-201ENST00000368019 IGLV2-18A0A075B6J9 118 aa8.84□□□□□ -0.99
USF1-201ENST00000368019 K7EMI3 77 aa8.84□□□□□ -0.99
USF1-201ENST00000368019 TNFRSF6BO95407 300 aa8.84□□□□□ -0.99
USF1-201ENST00000368019 RNASE1P07998 156 aaKnown RBP8.84□□□□□ -0.99
USF1-201ENST00000368019 COX7A1P24310 79 aa8.84□□□□□ -0.99
USF1-201ENST00000368019 FOXE3Q13461 319 aa8.84□□□□□ -0.99
USF1-201ENST00000368019 SAMD5Q5TGI4 173 aa8.84□□□□□ -0.99
USF1-201ENST00000368019 PHLDA1Q8WV24 401 aaPredicted RBP8.84□□□□□ -0.99
USF1-201ENST00000368019 DUX5Q96PT3 197 aa8.84□□□□□ -0.99
USF1-201ENST00000368019 ATP6V0BQ99437 205 aa8.84□□□□□ -0.99
USF1-201ENST00000368019 CHAC1Q9BUX1 264 aa8.84□□□□□ -0.99
USF1-201ENST00000368019 CMYA5Q8N3K9 4069 aa8.84□□□□□ -0.99
USF1-201ENST00000368019 IGKV2-40A0A087WW87 121 aaPredicted RBP8.83□□□□□ -1
USF1-201ENST00000368019 SNAI2O43623 268 aa8.83□□□□□ -1
USF1-201ENST00000368019 IGKV2D-40P01614 121 aaPredicted RBP8.83□□□□□ -1
USF1-201ENST00000368019 LEPP41159 167 aa8.83□□□□□ -1
USF1-201ENST00000368019 NMUP48645 174 aa8.83□□□□□ -1
USF1-201ENST00000368019 C9orf139Q6ZV77 190 aa8.83□□□□□ -1
USF1-201ENST00000368019 PCP2Q8IVA1 136 aa8.83□□□□□ -1
USF1-201ENST00000368019 VGLL1Q99990 258 aa8.83□□□□□ -1
USF1-201ENST00000368019 TRAV12-1A0A0B4J245 112 aa8.82□□□□□ -1
USF1-201ENST00000368019 TMEM238C9JI98 176 aa8.82□□□□□ -1
USF1-201ENST00000368019 E9PLD3 99 aa8.82□□□□□ -1
USF1-201ENST00000368019 F8W1H4 67 aa8.82□□□□□ -1
USF1-201ENST00000368019 J3QR89 54 aa8.82□□□□□ -1
USF1-201ENST00000368019 SAP30O75446 220 aa8.82□□□□□ -1
USF1-201ENST00000368019 IGHG4P01861 327 aa8.82□□□□□ -1
USF1-201ENST00000368019 ZNF80P51504 273 aaPredicted RBP8.82□□□□□ -1
USF1-201ENST00000368019 ZNF575Q86XF7 245 aa8.82□□□□□ -1
USF1-201ENST00000368019 CEND1Q8N111 149 aa8.82□□□□□ -1
USF1-201ENST00000368019 DKK2Q9UBU2 259 aa8.82□□□□□ -1
USF1-201ENST00000368019 CHTOPQ9Y3Y2 248 aaKnown RBP8.82□□□□□ -1
USF1-201ENST00000368019 HILPDAQ9Y5L2 63 aa8.82□□□□□ -1
USF1-201ENST00000368019 LENEPQ9Y5L5 61 aa8.82□□□□□ -1
USF1-201ENST00000368019 SMAD5-AS1Q9Y6J3 95 aa8.82□□□□□ -1
USF1-201ENST00000368019 TRBV25-1A0A075B6N4 114 aa8.81□□□□□ -1
USF1-201ENST00000368019 TMSB15BA0A087X1C1 80 aa8.81□□□□□ -1
USF1-201ENST00000368019 CTSGP08311 255 aa8.81□□□□□ -1
USF1-201ENST00000368019 IGHV4-38-2P0DP08 117 aa8.81□□□□□ -1
USF1-201ENST00000368019 FAM110DQ8TAY7 271 aaPredicted RBP8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 380.1 ms