RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SH3BGRL3Q9H299 93 aa9.16□□□□□ -0.94
VPS29-201ENST00000360579 OR51M1Q9H341 326 aa9.16□□□□□ -0.94
VPS29-201ENST00000360579 FBLL1A6NHQ2 334 aaKnown RBP9.15□□□□□ -0.94
VPS29-201ENST00000360579 CENPXA8MT69 81 aa9.15□□□□□ -0.94
VPS29-201ENST00000360579 CIDEAO60543 219 aa9.15□□□□□ -0.94
VPS29-201ENST00000360579 TOR2AQ5JU69 321 aa9.15□□□□□ -0.94
VPS29-201ENST00000360579 FAM167A-AS1Q96KT0 104 aa9.15□□□□□ -0.94
VPS29-201ENST00000360579 ATP5SQ99766 215 aa9.15□□□□□ -0.94
VPS29-201ENST00000360579 LYRM2Q9NU23 88 aaPredicted RBP9.15□□□□□ -0.94
VPS29-201ENST00000360579 COX11Q9Y6N1 276 aa9.15□□□□□ -0.94
VPS29-201ENST00000360579 IGHV3-16A0A0C4DH30 117 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 FAM25EA8MYX2 175 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 WFDC2Q14508 124 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 RHOHQ15669 191 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 ACOT6Q3I5F7 207 aaPredicted RBP9.14□□□□□ -0.95
VPS29-201ENST00000360579 GCSAMLQ5JQS6 135 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 SPANXN2Q5MJ10 180 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 SLC25A29Q8N8R3 303 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 PAXXQ9BUH6 204 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 CHAC1Q9BUX1 264 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 NPCDR1Q9BY65 106 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 MRPL18Q9H0U6 180 aaKnown RBP9.14□□□□□ -0.95
VPS29-201ENST00000360579 GTSF1LQ9H1H1 148 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 C11orf1Q9H5F2 150 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 NAGKQ9UJ70 344 aa9.14□□□□□ -0.95
VPS29-201ENST00000360579 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.13□□□□□ -0.95
VPS29-201ENST00000360579 TRBV6-4A0A1B0GX49 114 aa9.13□□□□□ -0.95
VPS29-201ENST00000360579 CCSO14618 274 aa9.13□□□□□ -0.95
VPS29-201ENST00000360579 KRTAP10-4P60372 401 aaPredicted RBP9.13□□□□□ -0.95
VPS29-201ENST00000360579 MIR17HGQ75NE6 70 aa9.13□□□□□ -0.95
VPS29-201ENST00000360579 TMEM252Q8N6L7 170 aa9.13□□□□□ -0.95
VPS29-201ENST00000360579 TMED6Q8WW62 240 aa9.13□□□□□ -0.95
VPS29-201ENST00000360579 FXYD5Q96DB9 178 aa9.13□□□□□ -0.95
VPS29-201ENST00000360579 PHYHIPLQ96FC7 376 aa9.13□□□□□ -0.95
VPS29-201ENST00000360579 PKHD1L1Q86WI1 4243 aa9.13□□□□□ -0.95
VPS29-201ENST00000360579 C5orf51A6NDU8 294 aa9.12□□□□□ -0.95
VPS29-201ENST00000360579 LECT2O14960 151 aa9.12□□□□□ -0.95
VPS29-201ENST00000360579 RS1O15537 224 aa9.12□□□□□ -0.95
VPS29-201ENST00000360579 OR10J4P0C629 311 aa9.12□□□□□ -0.95
VPS29-201ENST00000360579 RANP62826 216 aaKnown RBP9.12□□□□□ -0.95
VPS29-201ENST00000360579 ATP6V0E2Q8NHE4 81 aa9.12□□□□□ -0.95
VPS29-201ENST00000360579 KCNS1Q96KK3 526 aa9.12□□□□□ -0.95
VPS29-201ENST00000360579 KCNIP2Q9NS61 270 aa9.12□□□□□ -0.95
VPS29-201ENST00000360579 TRAV21A0A0B4J279 112 aa9.11□□□□□ -0.95
VPS29-201ENST00000360579 KRTAP9-6A0A140TA67 174 aa9.11□□□□□ -0.95
VPS29-201ENST00000360579 SCO2A0A1W2PP80 73 aa9.11□□□□□ -0.95
VPS29-201ENST00000360579 IGSF23A1L1A6 192 aa9.11□□□□□ -0.95
VPS29-201ENST00000360579 RBFOX3A6NFN3 312 aa9.11□□□□□ -0.95
VPS29-201ENST00000360579 DIRC3C9JPN6 131 aa9.11□□□□□ -0.95
VPS29-201ENST00000360579 GNRH2O43555 120 aa9.11□□□□□ -0.95
VPS29-201ENST00000360579 S100A10P60903 97 aa9.11□□□□□ -0.95
VPS29-201ENST00000360579 Q8N976 141 aa9.11□□□□□ -0.95
VPS29-201ENST00000360579 RMI2Q96E14 147 aa9.11□□□□□ -0.95
VPS29-201ENST00000360579 C2orf50Q96LR7 162 aa9.11□□□□□ -0.95
VPS29-201ENST00000360579 SDF2L1Q9HCN8 221 aa9.11□□□□□ -0.95
VPS29-201ENST00000360579 GGTLC3B5MD39 225 aa9.1□□□□□ -0.95
VPS29-201ENST00000360579 OR7C2O60412 319 aa9.1□□□□□ -0.95
VPS29-201ENST00000360579 IGLV2-8P01709 118 aa9.1□□□□□ -0.95
VPS29-201ENST00000360579 TYMSP04818 313 aa9.1□□□□□ -0.95
VPS29-201ENST00000360579 BTCP35070 178 aa9.1□□□□□ -0.95
VPS29-201ENST00000360579 ZNF876PQ49A33 203 aa9.1□□□□□ -0.95
VPS29-201ENST00000360579 CIRBP-AS1Q8TBR5 109 aa9.1□□□□□ -0.95
VPS29-201ENST00000360579 MGST1P10620 155 aaKnown RBP9.09□□□□□ -0.95
VPS29-201ENST00000360579 UBE2L3P68036 154 aaKnown RBP9.09□□□□□ -0.95
VPS29-201ENST00000360579 LINC01620Q4KN68 170 aa9.09□□□□□ -0.95
VPS29-201ENST00000360579 CFAP126Q5VTH2 177 aa9.09□□□□□ -0.95
VPS29-201ENST00000360579 BAALCQ8WXS3 180 aa9.09□□□□□ -0.95
VPS29-201ENST00000360579 SEC11BP0C7V7 166 aa9.08□□□□□ -0.96
VPS29-201ENST00000360579 CMTM2Q8TAZ6 248 aa9.08□□□□□ -0.96
VPS29-201ENST00000360579 THAP6Q8TBB0 222 aa9.08□□□□□ -0.96
VPS29-201ENST00000360579 ASB13Q8WXK3 278 aa9.08□□□□□ -0.96
VPS29-201ENST00000360579 RAB32Q13637 225 aa9.07□□□□□ -0.96
VPS29-201ENST00000360579 FAM74A1Q5RGS3 127 aa9.07□□□□□ -0.96
VPS29-201ENST00000360579 DAZ4Q86SG3 579 aaKnown RBP9.07□□□□□ -0.96
VPS29-201ENST00000360579 DAZ3Q9NR90 486 aaKnown RBP9.07□□□□□ -0.96
VPS29-201ENST00000360579 A0A087WWC5 75 aa9.06□□□□□ -0.96
VPS29-201ENST00000360579 TRAV8-1A0A0A6YYK1 113 aa9.06□□□□□ -0.96
VPS29-201ENST00000360579 IGHV3-73A0A0B4J1V6 119 aa9.06□□□□□ -0.96
VPS29-201ENST00000360579 RNF222A6NCQ9 220 aa9.06□□□□□ -0.96
VPS29-201ENST00000360579 C17orf112F2Z3M2 114 aa9.06□□□□□ -0.96
VPS29-201ENST00000360579 IGLV2-11P01706 119 aa9.06□□□□□ -0.96
VPS29-201ENST00000360579 KHDC3LQ587J8 217 aa9.06□□□□□ -0.96
VPS29-201ENST00000360579 ARL6IP6Q8N6S5 226 aa9.06□□□□□ -0.96
VPS29-201ENST00000360579 OR5C1Q8NGR4 320 aa9.06□□□□□ -0.96
VPS29-201ENST00000360579 HYLS1Q96M11 299 aa9.06□□□□□ -0.96
VPS29-201ENST00000360579 TREM1Q9NP99 234 aa9.06□□□□□ -0.96
VPS29-201ENST00000360579 OTORQ9NRC9 128 aa9.06□□□□□ -0.96
VPS29-201ENST00000360579 RNF213Q63HN8 5207 aa9.05□□□□□ -0.96
VPS29-201ENST00000360579 TAS2R45P59539 299 aa9.05□□□□□ -0.96
VPS29-201ENST00000360579 RPL37AP61513 92 aaKnown RBP9.05□□□□□ -0.96
VPS29-201ENST00000360579 IL15RAQ13261 267 aa9.05□□□□□ -0.96
VPS29-201ENST00000360579 PTH2Q96A98 100 aa9.05□□□□□ -0.96
VPS29-201ENST00000360579 NMES1Q9C002 83 aa9.05□□□□□ -0.96
VPS29-201ENST00000360579 URGCP-MRPS24S4R325 110 aa9.05□□□□□ -0.96
VPS29-201ENST00000360579 IGKV2D-24A0A075B6R9 120 aa9.04□□□□□ -0.96
VPS29-201ENST00000360579 CCDC160A6NGH7 325 aa9.04□□□□□ -0.96
VPS29-201ENST00000360579 F6UZH7 168 aa9.04□□□□□ -0.96
VPS29-201ENST00000360579 NHLH2Q02577 135 aa9.04□□□□□ -0.96
VPS29-201ENST00000360579 DPPA3Q6W0C5 159 aa9.04□□□□□ -0.96
VPS29-201ENST00000360579 WDR61Q9GZS3 305 aaKnown RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 144.7 ms