RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 A0A1B0GW64 132 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 IGKV4-1P06312 121 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 ATP6V0E2Q8NHE4 81 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 B3GALT5-AS1P59052 145 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 B9D2Q9BPU9 175 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 PRO3102Q9H379 93 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 H3BRN7 92 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 LTAP01374 205 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 SH2D6Q7Z4S9 175 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 DOCK4Q8N1I0 1966 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 IGHV4-59P01825 116 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 ADCYAP1P18509 176 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 FOXE3Q13461 319 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 CEND1Q8N111 149 aa8.07□□□□□ -1.12
CLIP1-202ENST00000358808 TCF20Q9UGU0 1960 aaKnown RBP8.06□□□□□ -1.12
CLIP1-202ENST00000358808 MYO7BQ6PIF6 2116 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 TRBV6-6A0A0A6YYG2 114 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 ETV2O00321 342 aaPredicted RBP8.06□□□□□ -1.12
CLIP1-202ENST00000358808 HIST2H2BCQ6DN03 193 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 WDR86Q86TI4 376 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 PRR25Q96S07 402 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 ACYP1P07311 99 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 IGFBPL1Q8WX77 278 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 KLHDC3Q9BQ90 382 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 SIGLEC8Q9NYZ4 499 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 GREB1Q4ZG55 1949 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 K7EQD1 137 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 HERV-K104P63124 156 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 MRPL35Q9NZE8 188 aaKnown RBP8.06□□□□□ -1.12
CLIP1-202ENST00000358808 C9orf118A6NHY6 69 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 NDUFC2O95298 119 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 HLA-DMBP28068 263 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 ANKRD39Q53RE8 183 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 RNF183Q96D59 192 aa8.06□□□□□ -1.12
CLIP1-202ENST00000358808 SLURP1P55000 103 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 ZNF833PQ6ZTB9 187 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 DOCK7Q96N67 2140 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 IGFL3Q6UXB1 125 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 NDUFA4L2Q9NRX3 87 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 PI4KAP42356 2102 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 LTBP2Q14767 1821 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 F8W1H4 67 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 NDUFA1O15239 70 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 GNRH2O43555 120 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 DEFB113Q30KQ7 82 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 GTSF1Q8WW33 167 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 SPATA25Q9BR10 227 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 NUP210Q8TEM1 1887 aaPredicted RBP8.05□□□□□ -1.12
CLIP1-202ENST00000358808 ARTNQ5T4W7 220 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 AMTNQ6UX39 209 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 IL17DQ8TAD2 202 aa8.05□□□□□ -1.12
CLIP1-202ENST00000358808 PNRC2Q9NPJ4 139 aaKnown RBP8.04□□□□□ -1.12
CLIP1-202ENST00000358808 PYGO2Q9BRQ0 406 aa8.04□□□□□ -1.12
CLIP1-202ENST00000358808 ZNF581Q9P0T4 197 aa8.04□□□□□ -1.12
CLIP1-202ENST00000358808 DOCK11Q5JSL3 2073 aa8.04□□□□□ -1.12
CLIP1-202ENST00000358808 K7ERS5 55 aa8.04□□□□□ -1.12
CLIP1-202ENST00000358808 C9JQL5 133 aa8.04□□□□□ -1.12
CLIP1-202ENST00000358808 K7ERJ3 54 aa8.04□□□□□ -1.12
CLIP1-202ENST00000358808 MUSTN1Q8IVN3 82 aa8.04□□□□□ -1.12
CLIP1-202ENST00000358808 A0A0G2JRQ6 117 aa8.04□□□□□ -1.12
CLIP1-202ENST00000358808 TEX22C9J3V5 150 aa8.04□□□□□ -1.12
CLIP1-202ENST00000358808 Q8TCH9 128 aa8.04□□□□□ -1.12
CLIP1-202ENST00000358808 NTN5Q8WTR8 489 aaPredicted RBP8.04□□□□□ -1.12
CLIP1-202ENST00000358808 NPYP01303 97 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 H3BUA1 57 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 VOPP1Q96AW1 172 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 ETDBQ3ZM63 59 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 Q8NFD4 153 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 C18orf32Q8TCD1 76 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 OPRPNQ99935 248 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-202ENST00000358808 C20orf78Q9BR46 151 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 MED13LQ71F56 2210 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 F8VRH5 84 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 PSMB8P28062 276 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 WDR81Q562E7 1941 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 DOCK6Q96HP0 2047 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 HOXB4P17483 251 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-202ENST00000358808 DUX4L9Q6RFH8 374 aaPredicted RBP8.03□□□□□ -1.12
CLIP1-202ENST00000358808 FANCMQ8IYD8 2048 aa8.03□□□□□ -1.12
CLIP1-202ENST00000358808 IGLC2P0DOY2 106 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 IGLC3P0DOY3 106 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 C17orf77Q96MU5 243 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.02□□□□□ -1.136e-7■■■■■ 33
CLIP1-202ENST00000358808 PHF3Q92576 2039 aaKnown RBP8.02□□□□□ -1.13
CLIP1-202ENST00000358808 ZFP2Q6ZN57 461 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 TPSG1Q9NRR2 321 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 KLF2Q9Y5W3 355 aaPredicted RBP8.02□□□□□ -1.13
CLIP1-202ENST00000358808 COL4A4P53420 1690 aaPredicted RBP8.02□□□□□ -1.13
CLIP1-202ENST00000358808 WIPF3A6NGB9 483 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 DEFB4AO15263 64 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 PIP4P1Q86T03 277 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 USF3Q68DE3 2245 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 ZNF407Q9C0G0 2248 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 IGHV4OR15-8A0A075B7B6 117 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 A0A087WW49 117 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 LOXP28300 417 aaPredicted RBP8.02□□□□□ -1.13
CLIP1-202ENST00000358808 WIPF2Q8TF74 440 aaPredicted RBP8.02□□□□□ -1.13
CLIP1-202ENST00000358808 GPR179Q6PRD1 2367 aa8.02□□□□□ -1.13
CLIP1-202ENST00000358808 ZC2HC1AQ96GY0 325 aa8.01□□□□□ -1.13
CLIP1-202ENST00000358808 SND1-IT1Q9HBX3 110 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms