RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 PSMG3-AS1Q96PY0 264 aa3.14□□□□□ -1.91
NEDD4-201ENST00000338963 FUSP35637 526 aaKnown RBP eCLIP3.13□□□□□ -1.91
NEDD4-201ENST00000338963 NRACQ8N912 160 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 ESM1Q9NQ30 184 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 IGLV4-69A0A075B6H9 119 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 EGR2P11161 476 aaPredicted RBP3.13□□□□□ -1.91
NEDD4-201ENST00000338963 VMO1Q7Z5L0 202 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 OVOL3O00110 214 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 GRPP07492 148 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 CD28P10747 220 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 PMS2CLQ68D20 193 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 FAM223AQ8IWN6 122 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 LINC00482Q8N8I6 264 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 Q9UF83 564 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 Q0VFX4 171 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 CCDC140Q96MF4 163 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 ORMDL1Q9P0S3 153 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 KAT6AQ92794 2004 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 ZNHIT1O43257 154 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 IGHV1OR15-9A0A0B4J2B8 117 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 IGIPA6NJ69 53 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 HIST2H2BCQ6DN03 193 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 HIST2H2BDQ6DRA6 164 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 C8orf49Q96NF6 230 aa3.13□□□□□ -1.91
NEDD4-201ENST00000338963 PSPNO60542 156 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 TRBV12-3P01733 135 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 MGPP08493 103 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 PLA2G5P39877 138 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 NSUN5P1Q3KNT7 163 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 CCL26Q9Y258 94 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 IGHV4OR15-8A0A075B7B6 117 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 A0A087WW49 117 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 TRAV12-3A0A0B4J271 114 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 TRAV21A0A0B4J279 112 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 F8WEM9 126 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 PATE4P0C8F1 98 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 FP248Q71RG6 208 aaPredicted RBP3.12□□□□□ -1.91
NEDD4-201ENST00000338963 FGF23Q9GZV9 251 aaPredicted RBP3.12□□□□□ -1.91
NEDD4-201ENST00000338963 MRPL36Q9P0J6 103 aaKnown RBP3.12□□□□□ -1.91
NEDD4-201ENST00000338963 Q6ZS46 218 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 ZNF833PQ6ZTB9 187 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 DCTN5Q9BTE1 182 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 CDSNQ15517 529 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 PHLDA3Q9Y5J5 127 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 ADAMTSL1Q8N6G6 1762 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 UBR3Q6ZT12 1888 aa3.12□□□□□ -1.91
NEDD4-201ENST00000338963 IGLV3-12A0A075B6K2 115 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 LINC00574Q9H8X3 128 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 BRWD3Q6RI45 1802 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 TRBV6-5A0A0K0K1A5 114 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 IGF1P05019 195 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 APOC4P55056 127 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 Q1T7F1 81 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 CCL13Q99616 98 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 Q6ZVQ6 151 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 WDR86Q86TI4 376 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 AMELXQ99217 191 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 DKK1O94907 266 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 CRIP1P50238 77 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 TM2D3Q9BRN9 247 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 RNF186Q9NXI6 227 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 IGHV3OR16-10A0A075B7F0 116 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 RFPL3SP0C7P2 107 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 RPL28P46779 137 aaKnown RBP3.11□□□□□ -1.91
NEDD4-201ENST00000338963 WT1-ASQ06250 92 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 OBSCN-AS1Q96MR7 158 aa3.11□□□□□ -1.91
NEDD4-201ENST00000338963 RBM12B-AS1Q9P1G2 102 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 A0A087WVE0 104 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 IGHV5-51A0A0C4DH38 117 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 SPTY2D1-AS1A0A0U1RR47 76 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 IGHV3-30-3P0DP02 117 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 ATP11AUNQ6ZP68 121 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 ZNF491Q8N8L2 437 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 IGHV3-15A0A0B4J1V0 119 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 SRRM5B3KS81 715 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 PROP1O75360 226 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 C15orf32Q32M92 178 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 SERTAD4-AS1Q5TG53 156 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 LCA10Q71F78 164 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 C14orf178Q8N769 122 aaPredicted RBP3.1□□□□□ -1.91
NEDD4-201ENST00000338963 F5H697 171 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 NDUFA1O15239 70 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 GRNP28799 593 aaKnown RBP3.1□□□□□ -1.91
NEDD4-201ENST00000338963 CYP4F30PQ9H0H9 118 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 MSRB1Q9NZV6 116 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 TDRD15B5MCY1 1934 aaKnown RBP3.1□□□□□ -1.91
NEDD4-201ENST00000338963 ZNF106Q9H2Y7 1883 aaKnown RBP3.1□□□□□ -1.91
NEDD4-201ENST00000338963 SPRY2O43597 315 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 FAM182BQ5T319 152 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 SPRR3Q9UBC9 169 aa3.1□□□□□ -1.91
NEDD4-201ENST00000338963 TRAV23DV6A0A075B6W5 121 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 TSPEAR-AS2P59090 65 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 PLXNA3P51805 1871 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 LYPD5Q6UWN5 251 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 C20orf203Q8NBC4 194 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 CCL4L1Q8NHW4 92 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 C14orf132Q9NPU4 83 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 IGHV1-18A0A0C4DH31 117 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 MLANAQ16655 118 aa3.09□□□□□ -1.91
NEDD4-201ENST00000338963 LINC00308Q8TCZ7 52 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms