RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 IGLC3P0DOY3 106 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 TMEM61Q8N0U2 210 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 TRAV8-2A0A0B4J237 113 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 DEFB114Q30KQ6 69 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 CD300EQ496F6 205 aaPredicted RBP7.55□□□□□ -1.2
HMGB3-201ENST00000325307 LCN12Q6JVE5 192 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 KCNIP4Q6PIL6 250 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 Q6ZVH6 145 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 RNASE7Q9H1E1 156 aaKnown RBP7.55□□□□□ -1.2
HMGB3-201ENST00000325307 ISLRO14498 428 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 GNG4P50150 75 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 NHLRC2Q8NBF2 726 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 OR10G8Q8NGN5 311 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 ZNF747Q9BV97 191 aa7.55□□□□□ -1.2
HMGB3-201ENST00000325307 IGKV2-40A0A087WW87 121 aaPredicted RBP7.54□□□□□ -1.2
HMGB3-201ENST00000325307 TRAV8-1A0A0A6YYK1 113 aa7.54□□□□□ -1.2
HMGB3-201ENST00000325307 DIRC3C9JPN6 131 aa7.54□□□□□ -1.2
HMGB3-201ENST00000325307 IGKV2D-40P01614 121 aaPredicted RBP7.54□□□□□ -1.2
HMGB3-201ENST00000325307 ZNF688P0C7X2 276 aa7.54□□□□□ -1.2
HMGB3-201ENST00000325307 LINC00482Q8N8I6 264 aa7.54□□□□□ -1.2
HMGB3-201ENST00000325307 DAZAP1Q96EP5 407 aaKnown RBP7.54□□□□□ -1.2
HMGB3-201ENST00000325307 SSBP4Q9BWG4 385 aaPredicted RBP7.54□□□□□ -1.2
HMGB3-201ENST00000325307 UQCR10Q9UDW1 63 aa7.54□□□□□ -1.2
HMGB3-201ENST00000325307 LAMTOR2Q9Y2Q5 125 aa7.54□□□□□ -1.2
HMGB3-201ENST00000325307 ZNF705DP0CH99 300 aaPredicted RBP7.54□□□□□ -1.2
HMGB3-201ENST00000325307 ZNF705BP0CI00 300 aaPredicted RBP7.54□□□□□ -1.2
HMGB3-201ENST00000325307 AZU1P20160 251 aa7.54□□□□□ -1.2
HMGB3-201ENST00000325307 SNRPD3P62318 126 aaKnown RBP7.54□□□□□ -1.2
HMGB3-201ENST00000325307 TRAPPC1Q9Y5R8 145 aa7.54□□□□□ -1.2
HMGB3-201ENST00000325307 DCANP1Q8TF63 244 aa7.54□□□□□ -1.2
HMGB3-201ENST00000325307 C20orf173Q96LM9 149 aa7.54□□□□□ -1.2
HMGB3-201ENST00000325307 IL36BQ9NZH7 164 aa7.54□□□□□ -1.2
HMGB3-201ENST00000325307 SOCS3O14543 225 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 COX19Q49B96 90 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 PSMG4Q5JS54 123 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 PRNTQ86SH4 94 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 SS18L2Q9UHA2 77 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 COL6A5A8TX70 2615 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 PRAC2D3DTV9 90 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 SNAI2O43623 268 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 FMC1Q96HJ9 113 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 PAM16Q9Y3D7 125 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 NOTCH3Q9UM47 2321 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 CD33P20138 364 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 BAGE2Q86Y30 109 aa7.53□□□□□ -1.2
HMGB3-201ENST00000325307 K7EQG2 157 aa7.52□□□□□ -1.21
HMGB3-201ENST00000325307 MGST1P10620 155 aaKnown RBP7.52□□□□□ -1.21
HMGB3-201ENST00000325307 DEFB1P60022 68 aa7.52□□□□□ -1.21
HMGB3-201ENST00000325307 SIGLEC8Q9NYZ4 499 aa7.52□□□□□ -1.21
HMGB3-201ENST00000325307 PSG8Q9UQ74 426 aa7.52□□□□□ -1.21
HMGB3-201ENST00000325307 STAB1Q9NY15 2570 aa7.52□□□□□ -1.21
HMGB3-201ENST00000325307 IZUMO1RA6ND01 250 aa7.52□□□□□ -1.21
HMGB3-201ENST00000325307 ERCC8Q13216 396 aa7.52□□□□□ -1.21
HMGB3-201ENST00000325307 MRPL53Q96EL3 112 aaKnown RBP7.52□□□□□ -1.21
HMGB3-201ENST00000325307 ASCL2Q99929 193 aa7.52□□□□□ -1.21
HMGB3-201ENST00000325307 SORL1Q92673 2214 aa7.52□□□□□ -1.21
HMGB3-201ENST00000325307 OR4C46A6NHA9 309 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 M0QXV9 152 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 RPL32P62910 135 aaKnown RBP7.51□□□□□ -1.21
HMGB3-201ENST00000325307 VGLL1Q99990 258 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 GPX1P07203 203 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 HIST1H1AQ02539 215 aaPredicted RBP7.51□□□□□ -1.21
HMGB3-201ENST00000325307 NIT1Q86X76 327 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 TMEM75Q8N9X5 138 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 OR10J6PQ8NGY7 276 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 Q8TAT8 98 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 SPAG8Q99932 426 aaPredicted RBP7.51□□□□□ -1.21
HMGB3-201ENST00000325307 KLF12Q9Y4X4 402 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 F6UB75 175 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 SERF1AO75920 110 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 CA1P00915 261 aaPredicted RBP7.51□□□□□ -1.21
HMGB3-201ENST00000325307 TMEM78Q5T7P6 136 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 Q86TA4 180 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 OSTCQ9NRP0 149 aa7.51□□□□□ -1.21
HMGB3-201ENST00000325307 LINC00322Q6ZN03 302 aaPredicted RBP7.5□□□□□ -1.21
HMGB3-201ENST00000325307 GEMIN7Q9H840 131 aaKnown RBP7.5□□□□□ -1.21
HMGB3-201ENST00000325307 GAGE12BA1L429 117 aa7.5□□□□□ -1.21
HMGB3-201ENST00000325307 IGLV2-11P01706 119 aa7.5□□□□□ -1.21
HMGB3-201ENST00000325307 IBA57Q5T440 356 aaKnown RBP7.5□□□□□ -1.21
HMGB3-201ENST00000325307 SPATA3Q8NHX4 192 aa7.5□□□□□ -1.21
HMGB3-201ENST00000325307 MLST8Q9BVC4 326 aa7.5□□□□□ -1.21
HMGB3-201ENST00000325307 SMIM27A0A1W2PRY6 76 aa7.5□□□□□ -1.21
HMGB3-201ENST00000325307 IGLV1-51P01701 117 aa7.5□□□□□ -1.21
HMGB3-201ENST00000325307 TSPOP30536 169 aa7.5□□□□□ -1.21
HMGB3-201ENST00000325307 DEFB131AP59861 70 aa7.5□□□□□ -1.21
HMGB3-201ENST00000325307 SPATA45Q537H7 98 aa7.5□□□□□ -1.21
HMGB3-201ENST00000325307 MTURNQ8N3F0 131 aa7.5□□□□□ -1.21
HMGB3-201ENST00000325307 C9orf66Q5T8R8 295 aa7.49□□□□□ -1.21
HMGB3-201ENST00000325307 EBLN2Q6P2I7 272 aa7.49□□□□□ -1.21
HMGB3-201ENST00000325307 NDFIP1Q9BT67 221 aa7.49□□□□□ -1.21
HMGB3-201ENST00000325307 TPPP3Q9BW30 176 aa7.49□□□□□ -1.21
HMGB3-201ENST00000325307 LTAP01374 205 aa7.49□□□□□ -1.21
HMGB3-201ENST00000325307 OR10J3Q5JRS4 329 aa7.49□□□□□ -1.21
HMGB3-201ENST00000325307 OR8A1Q8NGG7 326 aa7.49□□□□□ -1.21
HMGB3-201ENST00000325307 MRAP2Q96G30 205 aa7.49□□□□□ -1.21
HMGB3-201ENST00000325307 VWFP04275 2813 aa7.49□□□□□ -1.21
HMGB3-201ENST00000325307 TRAV2A0A0B4J234 112 aa7.49□□□□□ -1.21
HMGB3-201ENST00000325307 RBAKDNA6NC62 111 aa7.49□□□□□ -1.21
HMGB3-201ENST00000325307 AGPAT4-IT1Q9H0P7 198 aa7.49□□□□□ -1.21
HMGB3-201ENST00000325307 IGKV3-20P01619 116 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms