RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 BTF3P20290 206 aaKnown RBP13.36□□□□□ -0.27
LIME1-201ENST00000309546 Q5BKY6 102 aa13.36□□□□□ -0.27
LIME1-201ENST00000309546 OR4C5Q8NGB2 326 aa13.36□□□□□ -0.27
LIME1-201ENST00000309546 SH3BGRL3Q9H299 93 aa13.36□□□□□ -0.27
LIME1-201ENST00000309546 TRAV4A0A0B4J268 109 aa13.35□□□□□ -0.27
LIME1-201ENST00000309546 K7EQD1 137 aa13.35□□□□□ -0.27
LIME1-201ENST00000309546 MBP02144 154 aa13.35□□□□□ -0.27
LIME1-201ENST00000309546 TCRAP04437 139 aa13.35□□□□□ -0.27
LIME1-201ENST00000309546 IQCF2Q8IXL9 164 aa13.35□□□□□ -0.27
LIME1-201ENST00000309546 C5orf17Q8NAS9 161 aa13.35□□□□□ -0.27
LIME1-201ENST00000309546 ABCA13Q86UQ4 5058 aa13.35□□□□□ -0.27
LIME1-201ENST00000309546 HSPG2P98160 4391 aa13.34□□□□□ -0.27
LIME1-201ENST00000309546 SERTM2A0A1B0GWG4 89 aa13.34□□□□□ -0.27
LIME1-201ENST00000309546 K7EQM0 130 aa13.34□□□□□ -0.27
LIME1-201ENST00000309546 GIPP09681 153 aaPredicted RBP13.34□□□□□ -0.27
LIME1-201ENST00000309546 ASB13Q8WXK3 278 aa13.34□□□□□ -0.27
LIME1-201ENST00000309546 KCNS1Q96KK3 526 aa13.34□□□□□ -0.27
LIME1-201ENST00000309546 ACTR3CQ9C0K3 210 aaPredicted RBP13.34□□□□□ -0.27
LIME1-201ENST00000309546 FXYD6-FXYD2A0A087WZ82 144 aa13.33□□□□□ -0.28
LIME1-201ENST00000309546 C9JCJ5 164 aa13.33□□□□□ -0.28
LIME1-201ENST00000309546 CXorf1O96002 111 aa13.33□□□□□ -0.28
LIME1-201ENST00000309546 ORM1P02763 201 aa13.33□□□□□ -0.28
LIME1-201ENST00000309546 KRTAP10-2P60368 255 aa13.33□□□□□ -0.28
LIME1-201ENST00000309546 SERF2P84101 59 aa13.33□□□□□ -0.28
LIME1-201ENST00000309546 INO80EQ8NBZ0 244 aaPredicted RBP13.33□□□□□ -0.28
LIME1-201ENST00000309546 TMEM167BQ9NRX6 74 aa13.33□□□□□ -0.28
LIME1-201ENST00000309546 GGTLC3B5MD39 225 aa13.32□□□□□ -0.28
LIME1-201ENST00000309546 CDK2AP2O75956 126 aa13.32□□□□□ -0.28
LIME1-201ENST00000309546 ZNF80P51504 273 aaPredicted RBP13.32□□□□□ -0.28
LIME1-201ENST00000309546 SUMO1P63165 101 aaKnown RBP13.32□□□□□ -0.28
LIME1-201ENST00000309546 Q6ZRN7 208 aaPredicted RBP13.32□□□□□ -0.28
LIME1-201ENST00000309546 WFDC10BQ8IUB3 73 aa13.32□□□□□ -0.28
LIME1-201ENST00000309546 PSG8Q9UQ74 426 aa13.32□□□□□ -0.28
LIME1-201ENST00000309546 BORCS7-ASMTA0A0B4J1R7 106 aa13.31□□□□□ -0.28
LIME1-201ENST00000309546 LOC100131303A0A0U1RQF7 123 aa13.31□□□□□ -0.28
LIME1-201ENST00000309546 GCGP01275 180 aa13.31□□□□□ -0.28
LIME1-201ENST00000309546 ZFP69Q49AA0 526 aa13.31□□□□□ -0.28
LIME1-201ENST00000309546 RPL7L1Q6DKI1 246 aaKnown RBP13.31□□□□□ -0.28
LIME1-201ENST00000309546 PRNTQ86SH4 94 aa13.31□□□□□ -0.28
LIME1-201ENST00000309546 SUN5Q8TC36 379 aa13.31□□□□□ -0.28
LIME1-201ENST00000309546 TXNDC17Q9BRA2 123 aa13.31□□□□□ -0.28
LIME1-201ENST00000309546 KRTAP4-5Q9BYR2 181 aa13.31□□□□□ -0.28
LIME1-201ENST00000309546 TNFSF18Q9UNG2 199 aa13.31□□□□□ -0.28
LIME1-201ENST00000309546 TNFRSF18Q9Y5U5 241 aa13.31□□□□□ -0.28
LIME1-201ENST00000309546 LY96Q9Y6Y9 160 aa13.31□□□□□ -0.28
LIME1-201ENST00000309546 RNF222A6NCQ9 220 aa13.3□□□□□ -0.28
LIME1-201ENST00000309546 FLI1Q01543 452 aaPredicted RBP13.3□□□□□ -0.28
LIME1-201ENST00000309546 MAPKAPK5-AS1Q8N8E1 139 aa13.3□□□□□ -0.28
LIME1-201ENST00000309546 CYB561D1Q8N8Q1 229 aa13.3□□□□□ -0.28
LIME1-201ENST00000309546 TMEM75Q8N9X5 138 aa13.3□□□□□ -0.28
LIME1-201ENST00000309546 EPDR1Q9UM22 224 aa13.3□□□□□ -0.28
LIME1-201ENST00000309546 TRAV9-2A0A087WT02 112 aa13.29□□□□□ -0.28
LIME1-201ENST00000309546 TAAR5O14804 337 aa13.29□□□□□ -0.28
LIME1-201ENST00000309546 NHLRC2Q8NBF2 726 aa13.29□□□□□ -0.28
LIME1-201ENST00000309546 OR2T35Q8NGX2 323 aa13.29□□□□□ -0.28
LIME1-201ENST00000309546 C11orf21Q9P2W6 132 aa13.29□□□□□ -0.28
LIME1-201ENST00000309546 DNAH5Q8TE73 4624 aa13.29□□□□□ -0.28
LIME1-201ENST00000309546 FBLL1A6NHQ2 334 aaKnown RBP13.28□□□□□ -0.28
LIME1-201ENST00000309546 IGLV2-11P01706 119 aa13.28□□□□□ -0.28
LIME1-201ENST00000309546 PFN1P07737 140 aaKnown RBP13.28□□□□□ -0.28
LIME1-201ENST00000309546 ERVFC1-1P60608 527 aa13.28□□□□□ -0.28
LIME1-201ENST00000309546 ZNF876PQ49A33 203 aa13.28□□□□□ -0.28
LIME1-201ENST00000309546 SMUG1Q53HV7 270 aa13.28□□□□□ -0.28
LIME1-201ENST00000309546 GATA1P15976 413 aaPredicted RBP13.27□□□□□ -0.29
LIME1-201ENST00000309546 EVI2AP22794 236 aa13.27□□□□□ -0.29
LIME1-201ENST00000309546 UBE2G2P60604 165 aa13.27□□□□□ -0.29
LIME1-201ENST00000309546 NFE4Q86UQ8 179 aa13.27□□□□□ -0.29
LIME1-201ENST00000309546 APOBP04114 4563 aaKnown RBP13.27□□□□□ -0.29
LIME1-201ENST00000309546 IGHV3-73A0A0B4J1V6 119 aa13.26□□□□□ -0.29
LIME1-201ENST00000309546 EREGO14944 169 aa13.26□□□□□ -0.29
LIME1-201ENST00000309546 FUSP35637 526 aaKnown RBP eCLIP13.26□□□□□ -0.29
LIME1-201ENST00000309546 PPT1P50897 306 aa13.26□□□□□ -0.29
LIME1-201ENST00000309546 ZNF726P1Q15940 193 aa13.26□□□□□ -0.29
LIME1-201ENST00000309546 TRAV34A0A0B4J273 112 aa13.25□□□□□ -0.29
LIME1-201ENST00000309546 CTXND1A0A1B0GTU2 59 aa13.25□□□□□ -0.29
LIME1-201ENST00000309546 A0A1W2PRE2 83 aa13.25□□□□□ -0.29
LIME1-201ENST00000309546 IFNA7P01567 189 aa13.25□□□□□ -0.29
LIME1-201ENST00000309546 FGF8P55075 233 aaPredicted RBP13.25□□□□□ -0.29
LIME1-201ENST00000309546 AKR1C8PQ5T2L2 129 aa13.25□□□□□ -0.29
LIME1-201ENST00000309546 DPPA3Q6W0C5 159 aa13.25□□□□□ -0.29
LIME1-201ENST00000309546 LINC00479Q96M42 142 aa13.25□□□□□ -0.29
LIME1-201ENST00000309546 C9orf85Q96MD7 179 aa13.25□□□□□ -0.29
LIME1-201ENST00000309546 MSRB1Q9NZV6 116 aa13.25□□□□□ -0.29
LIME1-201ENST00000309546 DNAH10OSP0CZ25 163 aa13.24□□□□□ -0.29
LIME1-201ENST00000309546 SAPCD1Q5SSQ6 148 aa13.24□□□□□ -0.29
LIME1-201ENST00000309546 CFAP126Q5VTH2 177 aa13.24□□□□□ -0.29
LIME1-201ENST00000309546 SH2D6Q7Z4S9 175 aa13.24□□□□□ -0.29
LIME1-201ENST00000309546 PGPEP1LA6NFU8 196 aa13.23□□□□□ -0.29
LIME1-201ENST00000309546 ARPC5O15511 151 aa13.23□□□□□ -0.29
LIME1-201ENST00000309546 RS1O15537 224 aa13.23□□□□□ -0.29
LIME1-201ENST00000309546 CRYGDP07320 174 aa13.23□□□□□ -0.29
LIME1-201ENST00000309546 RHOHQ15669 191 aa13.23□□□□□ -0.29
LIME1-201ENST00000309546 ZNF506Q5JVG8 444 aa13.23□□□□□ -0.29
LIME1-201ENST00000309546 SLC25A29Q8N8R3 303 aa13.23□□□□□ -0.29
LIME1-201ENST00000309546 PRADC1Q9BSG0 188 aa13.23□□□□□ -0.29
LIME1-201ENST00000309546 ARL2-SNX15V9GYD0 113 aa13.23□□□□□ -0.29
LIME1-201ENST00000309546 RNASE3P12724 160 aaKnown RBP13.22□□□□□ -0.29
LIME1-201ENST00000309546 RGS21Q2M5E4 152 aa13.22□□□□□ -0.29
LIME1-201ENST00000309546 K7EP13 123 aa13.21□□□□□ -0.29
LIME1-201ENST00000309546 PEX7O00628 323 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms