RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 RETNQ9HD89 108 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 SLC22A18ASQ8N1D0 253 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 IGKV1-12A0A0C4DH73 117 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 MBD3L4A6NDZ8 208 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-201ENST00000303395 MBD3L3A6NE82 208 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-201ENST00000303395 PRSS29PA6NIE9 313 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 MBD3L5A6NJ08 208 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-201ENST00000303395 USP17L23D6RBM5 183 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 IGKV1D-12P01611 117 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 PRR30Q53SZ7 412 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-201ENST00000303395 TMEM92Q6UXU6 159 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 MBD3L2Q8NHZ7 208 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-201ENST00000303395 A0A0B4J2C4 111 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 P0DMU3 169 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 FAM231AP0DMU4 169 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 FAM231CP0DMU5 169 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 LINC00643Q86TS7 51 aa4.23□□□□□ -1.73
SCN1A-201ENST00000303395 A0A1B0GXF2 115 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 KNCNA6PVL3 124 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 SRRM4A7MD48 611 aaKnown RBP4.22□□□□□ -1.73
SCN1A-201ENST00000303395 IGLL1P15814 213 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 UQCRQO14949 82 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 DAND5Q8N907 189 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 HIVEP2P31629 2446 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 C9JQL5 133 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 FAM110DQ8TAY7 271 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-201ENST00000303395 SRXN1Q9BYN0 137 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 RNASE7Q9H1E1 156 aaKnown RBP4.22□□□□□ -1.73
SCN1A-201ENST00000303395 IGKV2D-24A0A075B6R9 120 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 H0Y9J4 135 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 H3BRN7 92 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 SPAARA0A1B0GVQ0 90 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 IGHV3-53P01767 116 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 GGNQ86UU5 652 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 DYNAPQ8N1N2 210 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 V9GYY9 64 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 PRB2P02812 416 aaPredicted RBP4.22□□□□□ -1.73
SCN1A-201ENST00000303395 HERVK_113P63121 156 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 FAM222AQ5U5X8 452 aa4.22□□□□□ -1.73
SCN1A-201ENST00000303395 IGLV3-9A0A075B6K5 115 aa4.21□□□□□ -1.73
SCN1A-201ENST00000303395 NTF4P34130 210 aa4.21□□□□□ -1.73
SCN1A-201ENST00000303395 PFN2P35080 140 aa4.21□□□□□ -1.73
SCN1A-201ENST00000303395 PRR13Q9NZ81 148 aa4.21□□□□□ -1.73
SCN1A-201ENST00000303395 KLK5Q9Y337 293 aaPredicted RBP4.21□□□□□ -1.73
SCN1A-201ENST00000303395 CACNA1AO00555 2505 aa4.21□□□□□ -1.73
SCN1A-201ENST00000303395 A0A087X0K7 114 aa4.21□□□□□ -1.73
SCN1A-201ENST00000303395 C9orf47Q6ZRZ4 202 aa4.21□□□□□ -1.73
SCN1A-201ENST00000303395 IL17DQ8TAD2 202 aa4.21□□□□□ -1.73
SCN1A-201ENST00000303395 CECR9P0C854 216 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 BSPH1Q075Z2 132 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 C20orf204Q6ZNR8 217 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 A0A0J9YX75 114 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 ANGP03950 147 aaKnown RBP4.21□□□□□ -1.74
SCN1A-201ENST00000303395 MRPL36Q9P0J6 103 aaKnown RBP4.21□□□□□ -1.74
SCN1A-201ENST00000303395 ORMDL1Q9P0S3 153 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 ACACBO00763 2458 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 TRAV12-2A0A075B6T6 113 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 BUB3O43684 328 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 IGKV1D-8A0A087WSZ0 117 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 CRYGCP07315 174 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 MDKP21741 143 aaPredicted RBP4.21□□□□□ -1.74
SCN1A-201ENST00000303395 FAM201AQ5SY85 155 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 TMEM219Q86XT9 240 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 FAM19A2Q8N3H0 131 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 C5orf64Q2M2E5 130 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 HIGD2BQ4VC39 106 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 IGFL3Q6UXB1 125 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 C3orf22Q8N5N4 141 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 TMEM243Q9BU79 118 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 COL4A5P29400 1685 aa4.21□□□□□ -1.74
SCN1A-201ENST00000303395 LY6DQ14210 128 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 IGF2BP2-AS1Q96M15 143 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 HCSTQ9UBK5 93 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 IGKV1-27A0A075B6S5 117 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 E9PLD3 99 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 H7C423 109 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 CNFNQ9BYD5 112 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 S4R3C0 116 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 ZNF462Q96JM2 2506 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 TRAV40A0A0B4J280 105 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 C11orf86A6NJI1 115 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 CCL18P55774 89 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 GPHB5Q86YW7 130 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 LEAP2Q969E1 77 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 FN1P02751 2386 aaKnown RBP4.2□□□□□ -1.74
SCN1A-201ENST00000303395 IGLV1-44P01699 117 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 COX8CQ7Z4L0 72 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 LRRC75A-AS1Q8N1F1 130 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 PRR25Q96S07 402 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 CCL4P13236 92 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 SPINK2P20155 84 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 LOXL1Q08397 574 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-201ENST00000303395 FANCD2OSQ96PS1 177 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 TGFBR3LH3BV60 316 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 CFC1BP0CG36 223 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 CFC1P0CG37 223 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 ETDBQ3ZM63 59 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 LINC01560Q8TB33 94 aa4.2□□□□□ -1.74
SCN1A-201ENST00000303395 RNASE6Q93091 150 aaKnown RBP4.2□□□□□ -1.74
SCN1A-201ENST00000303395 B9D2Q9BPU9 175 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms