RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PRADC1Q9BSG0 188 aa9.87□□□□□ -0.83
CCDC88B-201ENST00000301897 Q9HAA7 133 aa9.87□□□□□ -0.83
CCDC88B-201ENST00000301897 LOC100131303A0A0U1RQF7 123 aa9.86□□□□□ -0.83
CCDC88B-201ENST00000301897 C17orf112F2Z3M2 114 aa9.86□□□□□ -0.83
CCDC88B-201ENST00000301897 H2AFB2P0C5Z0 115 aa9.86□□□□□ -0.83
CCDC88B-201ENST00000301897 OR5C1Q8NGR4 320 aa9.86□□□□□ -0.83
CCDC88B-201ENST00000301897 KCNS1Q96KK3 526 aa9.86□□□□□ -0.83
CCDC88B-201ENST00000301897 SH3BGRL3Q9H299 93 aa9.86□□□□□ -0.83
CCDC88B-201ENST00000301897 FAM30AQ9NZY2 134 aa9.86□□□□□ -0.83
CCDC88B-201ENST00000301897 NAGKQ9UJ70 344 aa9.86□□□□□ -0.83
CCDC88B-201ENST00000301897 TRAV21A0A0B4J279 112 aa9.85□□□□□ -0.83
CCDC88B-201ENST00000301897 IGHV3-16A0A0C4DH30 117 aa9.85□□□□□ -0.83
CCDC88B-201ENST00000301897 FBLL1A6NHQ2 334 aaKnown RBP9.85□□□□□ -0.83
CCDC88B-201ENST00000301897 DIRC3C9JPN6 131 aa9.85□□□□□ -0.83
CCDC88B-201ENST00000301897 TAS2R45P59539 299 aa9.85□□□□□ -0.83
CCDC88B-201ENST00000301897 UBE2L3P68036 154 aaKnown RBP9.85□□□□□ -0.83
CCDC88B-201ENST00000301897 IFITM3Q01628 133 aa9.85□□□□□ -0.83
CCDC88B-201ENST00000301897 ASAH1Q13510 395 aa9.85□□□□□ -0.83
CCDC88B-201ENST00000301897 FAM74A1Q5RGS3 127 aa9.85□□□□□ -0.83
CCDC88B-201ENST00000301897 LELP1Q5T871 98 aa9.85□□□□□ -0.83
CCDC88B-201ENST00000301897 SDF2L1Q9HCN8 221 aa9.85□□□□□ -0.83
CCDC88B-201ENST00000301897 UPK1BO75841 260 aa9.84□□□□□ -0.83
CCDC88B-201ENST00000301897 RHOHQ15669 191 aa9.84□□□□□ -0.83
CCDC88B-201ENST00000301897 KHDC3LQ587J8 217 aa9.84□□□□□ -0.83
CCDC88B-201ENST00000301897 SERTAD4-AS1Q5TG53 156 aa9.84□□□□□ -0.83
CCDC88B-201ENST00000301897 Q6ZSA8 131 aa9.84□□□□□ -0.83
CCDC88B-201ENST00000301897 ARL6IP6Q8N6S5 226 aa9.84□□□□□ -0.83
CCDC88B-201ENST00000301897 CMTM2Q8TAZ6 248 aa9.84□□□□□ -0.83
CCDC88B-201ENST00000301897 FAM240BA0A1B0GVZ2 78 aa9.83□□□□□ -0.84
CCDC88B-201ENST00000301897 TRBV6-4A0A1B0GX49 114 aa9.83□□□□□ -0.84
CCDC88B-201ENST00000301897 GNRH2O43555 120 aa9.83□□□□□ -0.84
CCDC88B-201ENST00000301897 LINC00528Q8N1L1 170 aa9.83□□□□□ -0.84
CCDC88B-201ENST00000301897 SYT8Q8NBV8 401 aa9.83□□□□□ -0.84
CCDC88B-201ENST00000301897 WDR61Q9GZS3 305 aaKnown RBP9.83□□□□□ -0.84
CCDC88B-201ENST00000301897 BATF3Q9NR55 127 aa9.83□□□□□ -0.84
CCDC88B-201ENST00000301897 OTORQ9NRC9 128 aa9.83□□□□□ -0.84
CCDC88B-201ENST00000301897 TRAV8-3A0A0A6YYJ7 113 aa9.82□□□□□ -0.84
CCDC88B-201ENST00000301897 IGHV3-30P01768 117 aa9.82□□□□□ -0.84
CCDC88B-201ENST00000301897 IGHV3-33P01772 117 aa9.82□□□□□ -0.84
CCDC88B-201ENST00000301897 IGHV3-30-3P0DP02 117 aa9.82□□□□□ -0.84
CCDC88B-201ENST00000301897 IGHV3-30-5P0DP03 117 aa9.82□□□□□ -0.84
CCDC88B-201ENST00000301897 MZT2BQ6NZ67 158 aa9.82□□□□□ -0.84
CCDC88B-201ENST00000301897 SLC25A29Q8N8R3 303 aa9.82□□□□□ -0.84
CCDC88B-201ENST00000301897 ASB13Q8WXK3 278 aa9.82□□□□□ -0.84
CCDC88B-201ENST00000301897 HYLS1Q96M11 299 aa9.82□□□□□ -0.84
CCDC88B-201ENST00000301897 GTSF1LQ9H1H1 148 aa9.82□□□□□ -0.84
CCDC88B-201ENST00000301897 TYMSP04818 313 aa9.81□□□□□ -0.84
CCDC88B-201ENST00000301897 ZNF876PQ49A33 203 aa9.81□□□□□ -0.84
CCDC88B-201ENST00000301897 TOR2AQ5JU69 321 aa9.81□□□□□ -0.84
CCDC88B-201ENST00000301897 NMES1Q9C002 83 aa9.81□□□□□ -0.84
CCDC88B-201ENST00000301897 OR5AC2Q9NZP5 309 aa9.81□□□□□ -0.84
CCDC88B-201ENST00000301897 COX11Q9Y6N1 276 aa9.81□□□□□ -0.84
CCDC88B-201ENST00000301897 DNAH8Q96JB1 4490 aa9.8□□□□□ -0.84
CCDC88B-201ENST00000301897 MGST1P10620 155 aaKnown RBP9.8□□□□□ -0.84
CCDC88B-201ENST00000301897 CYCSP99999 105 aaKnown RBP9.8□□□□□ -0.84
CCDC88B-201ENST00000301897 FFAR4Q5NUL3 377 aa9.8□□□□□ -0.84
CCDC88B-201ENST00000301897 ATP6V0E2Q8NHE4 81 aa9.8□□□□□ -0.84
CCDC88B-201ENST00000301897 TREM1Q9NP99 234 aa9.8□□□□□ -0.84
CCDC88B-201ENST00000301897 PGPA6NDG6 321 aa9.79□□□□□ -0.84
CCDC88B-201ENST00000301897 H0YIZ8 118 aa9.79□□□□□ -0.84
CCDC88B-201ENST00000301897 RS1O15537 224 aa9.79□□□□□ -0.84
CCDC88B-201ENST00000301897 SIX6O95475 246 aa9.79□□□□□ -0.84
CCDC88B-201ENST00000301897 CFAP126Q5VTH2 177 aa9.79□□□□□ -0.84
CCDC88B-201ENST00000301897 GOLT1AQ6ZVE7 132 aa9.79□□□□□ -0.84
CCDC88B-201ENST00000301897 NDFIP1Q9BT67 221 aa9.79□□□□□ -0.84
CCDC88B-201ENST00000301897 MBD2Q9UBB5 411 aa9.79□□□□□ -0.84
CCDC88B-201ENST00000301897 RPH3ALQ9UNE2 315 aa9.79□□□□□ -0.84
CCDC88B-201ENST00000301897 PQLC2Q6ZP29 291 aa9.78□□□□□ -0.84
CCDC88B-201ENST00000301897 PTH2Q96A98 100 aa9.78□□□□□ -0.84
CCDC88B-201ENST00000301897 SERTM2A0A1B0GWG4 89 aa9.77□□□□□ -0.85
CCDC88B-201ENST00000301897 GGTLC3B5MD39 225 aa9.77□□□□□ -0.85
CCDC88B-201ENST00000301897 F6UZH7 168 aa9.77□□□□□ -0.85
CCDC88B-201ENST00000301897 OXTP01178 125 aa9.77□□□□□ -0.85
CCDC88B-201ENST00000301897 SEC11BP0C7V7 166 aa9.77□□□□□ -0.85
CCDC88B-201ENST00000301897 SCGB1C1Q8TD33 95 aa9.77□□□□□ -0.85
CCDC88B-201ENST00000301897 RMI2Q96E14 147 aa9.77□□□□□ -0.85
CCDC88B-201ENST00000301897 MARVELD1Q9BSK0 173 aa9.77□□□□□ -0.85
CCDC88B-201ENST00000301897 A0A087WWC5 75 aa9.76□□□□□ -0.85
CCDC88B-201ENST00000301897 TAAR5O14804 337 aa9.76□□□□□ -0.85
CCDC88B-201ENST00000301897 WFDC2Q14508 124 aa9.76□□□□□ -0.85
CCDC88B-201ENST00000301897 LRRC37A5PQ49AS3 106 aa9.76□□□□□ -0.85
CCDC88B-201ENST00000301897 Q8N976 141 aa9.76□□□□□ -0.85
CCDC88B-201ENST00000301897 TVP23CQ96ET8 276 aa9.76□□□□□ -0.85
CCDC88B-201ENST00000301897 ENKURQ8TC29 256 aa9.75□□□□□ -0.85
CCDC88B-201ENST00000301897 C9orf85Q96MD7 179 aa9.75□□□□□ -0.85
CCDC88B-201ENST00000301897 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 TRAV8-1A0A0A6YYK1 113 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 IGHV3-73A0A0B4J1V6 119 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 A0A1W2PPV4 95 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 RBFOX3A6NFN3 312 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 INMT-MINDY4F8WBC2 141 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 K7EQM0 130 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 LECT2O14960 151 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 PET100P0DJ07 73 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 ACOT6Q3I5F7 207 aaPredicted RBP9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 ZNF506Q5JVG8 444 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 PIK3CD-AS1Q5SR53 167 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 DPPA3Q6W0C5 159 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 ZFP2Q6ZN57 461 aa9.74□□□□□ -0.85
CCDC88B-201ENST00000301897 SCXQ7RTU7 201 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms