RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 IGKV4-1P06312 121 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 C20orf197Q8N268 126 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 DEFB124Q8NES8 71 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 TNRC6AQ8NDV7 1962 aaKnown RBP5.11□□□□□ -1.59
VPS35-201ENST00000299138 DUSP14O95147 198 aaKnown RBP5.11□□□□□ -1.59
VPS35-201ENST00000299138 NREPQ16612 68 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 Q6ZUT4 128 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 SHANK2-AS3Q9BTD1 123 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 PRR15LQ9BU68 103 aa5.11□□□□□ -1.59
VPS35-201ENST00000299138 MBD3L4A6NDZ8 208 aaPredicted RBP5.1□□□□□ -1.59
VPS35-201ENST00000299138 MBD3L3A6NE82 208 aaPredicted RBP5.1□□□□□ -1.59
VPS35-201ENST00000299138 MBD3L5A6NJ08 208 aaPredicted RBP5.1□□□□□ -1.59
VPS35-201ENST00000299138 IGHV1-2P23083 117 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 RNASE13Q5GAN3 156 aaKnown RBP5.1□□□□□ -1.59
VPS35-201ENST00000299138 SIGLEC15Q6ZMC9 328 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 WDR86Q86TI4 376 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 MBD3L2Q8NHZ7 208 aaPredicted RBP5.1□□□□□ -1.59
VPS35-201ENST00000299138 FXYD5Q96DB9 178 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 NDUFA12Q9UI09 145 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 C11orf53Q8IXP5 236 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 DOCK10Q96BY6 2186 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 ELANEP08246 267 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 CD177Q8N6Q3 437 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 NEU4Q8WWR8 484 aaPredicted RBP5.1□□□□□ -1.59
VPS35-201ENST00000299138 CLUHP3Q96NS8 147 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 DOCK8Q8NF50 2099 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 RBAKDNA6NC62 111 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 CCL21O00585 134 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 TIMM17BO60830 172 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 CFC1BP0CG36 223 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 CFC1P0CG37 223 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 CASC2Q6XLA1 102 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 RPL35AP18077 110 aaKnown RBP5.1□□□□□ -1.59
VPS35-201ENST00000299138 HERVK_113P63121 156 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 DTX1Q86Y01 620 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 PTH2Q96A98 100 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 VSIG2Q96IQ7 327 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 DKK2Q9UBU2 259 aa5.1□□□□□ -1.59
VPS35-201ENST00000299138 TRAV4A0A0B4J268 109 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 TMEM213A2RRL7 107 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 CELA2AP08217 269 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 BRWD1-AS2P59051 145 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 HS3ST6Q96QI5 342 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 KIAA2026Q5HYC2 2103 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 IGKV1D-17A0A075B6S4 117 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 IGHV3-16A0A0C4DH30 117 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 HRCT1Q6UXD1 115 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 COX7B2Q8TF08 81 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 ZNF318Q5VUA4 2279 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 DOCK11Q5JSL3 2073 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 IGHV4-30-2A0A087WSY4 118 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 TRAV26-2A0A0B4J265 109 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 FOXI1Q12951 378 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 SPRY4Q9C004 299 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 NDUFB1O75438 58 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 SLC25A29Q8N8R3 303 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 PRO3102Q9H379 93 aa5.09□□□□□ -1.59
VPS35-201ENST00000299138 CFHR3Q02985 330 aa5.09□□□□□ -1.6
VPS35-201ENST00000299138 CHD3Q12873 2000 aaKnown RBP5.09□□□□□ -1.6
VPS35-201ENST00000299138 PRR30Q53SZ7 412 aaPredicted RBP5.09□□□□□ -1.6
VPS35-201ENST00000299138 LRP4O75096 1905 aa5.09□□□□□ -1.6
VPS35-201ENST00000299138 ARMS2P0C7Q2 107 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 TM2D2Q9BX73 214 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 MRPL35Q9NZE8 188 aaKnown RBP5.08□□□□□ -1.6
VPS35-201ENST00000299138 MPDZO75970 2070 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 IGHV3-38A0A0C4DH36 116 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 OVOL1O14753 267 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 UBE2BP63146 152 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 FAM201AQ5SY85 155 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 C16orf54Q6UWD8 224 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 CYYR1Q96J86 154 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 U3KQK5 164 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 GP9P14770 177 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 CLPSL2Q6UWE3 100 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 TIMM17AQ99595 171 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 FAM110AQ9BQ89 295 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 C2orf66Q6UXQ4 117 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 FOXI2Q6ZQN5 318 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 C7orf69Q9H7B7 122 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 A0A0J9YWU9 116 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 GNLYP22749 145 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 UFSP1Q6NVU6 142 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 CFHR4Q92496 578 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 Q8N8P6 123 aa5.08□□□□□ -1.6
VPS35-201ENST00000299138 IGHV1-69DA0A0B4J2H0 117 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 GATA1P15976 413 aaPredicted RBP5.07□□□□□ -1.6
VPS35-201ENST00000299138 HOXB4P17483 251 aaPredicted RBP5.07□□□□□ -1.6
VPS35-201ENST00000299138 HIST2H2BCQ6DN03 193 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 HIST2H2BDQ6DRA6 164 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 IGF2-ASQ6U949 168 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 TRPT1Q86TN4 253 aaKnown RBP5.07□□□□□ -1.6
VPS35-201ENST00000299138 LAMA3Q16787 3333 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 IGLL5B9A064 214 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 MED14OSP0DP75 135 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 TMEM141Q96I45 108 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 LINC00479Q96M42 142 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 RALGAPA1Q6GYQ0 2036 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 SPAARA0A1B0GVQ0 90 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 IGFL2Q6UWQ7 119 aa5.07□□□□□ -1.6
VPS35-201ENST00000299138 H0Y9J4 135 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms