RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 IGKV3D-20A0A0C4DH25 116 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 IGHV1-3A0A0C4DH29 117 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 CEACAM4O75871 244 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 NRACQ8N912 160 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 PSMG3-AS1Q96PY0 264 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 SMAD5-AS1Q9Y6J3 95 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 ACACBO00763 2458 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 H7C2G1 150 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 IGHG3P01860 377 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 GAGE5Q13069 117 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 GAGE6Q13070 117 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 TEN1Q86WV5 123 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 PPDPFLQ8WWR9 84 aa10.4□□□□□ -0.74
SKA3-201ENST00000298260 TRAV4A0A0B4J268 109 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 ZFAND6Q6FIF0 208 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 ONECUT1Q9UBC0 465 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 ITPR1Q14643 2758 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 IGHV3-49A0A0A0MS15 119 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 LINC01546A6NGU7 62 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 LYNX1G3V0Z9 82 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 LYNX1P0DP58 116 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 CFAP161Q6P656 301 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 TEX29Q8N6K0 151 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 RAX2Q96IS3 184 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 F8VRH5 84 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 Q6ZS46 218 aa10.39□□□□□ -0.75
SKA3-201ENST00000298260 TRPT1Q86TN4 253 aaKnown RBP10.39□□□□□ -0.75
SKA3-201ENST00000298260 FABP5P3A8MUU1 101 aa10.38□□□□□ -0.75
SKA3-201ENST00000298260 PLNP26678 52 aa10.38□□□□□ -0.75
SKA3-201ENST00000298260 DLX6P56179 175 aa10.38□□□□□ -0.75
SKA3-201ENST00000298260 SCGB3A1Q96QR1 104 aa10.38□□□□□ -0.75
SKA3-201ENST00000298260 H7C1H1 209 aa10.38□□□□□ -0.75
SKA3-201ENST00000298260 ZNF688P0C7X2 276 aa10.38□□□□□ -0.75
SKA3-201ENST00000298260 SCGB1C2P0DMR2 95 aa10.38□□□□□ -0.75
SKA3-201ENST00000298260 TMEM30BQ3MIR4 351 aa10.38□□□□□ -0.75
SKA3-201ENST00000298260 ATP6V0E2Q8NHE4 81 aa10.38□□□□□ -0.75
SKA3-201ENST00000298260 CD40P25942 277 aa10.37□□□□□ -0.75
SKA3-201ENST00000298260 RPL39LQ96EH5 51 aaKnown RBP10.37□□□□□ -0.75
SKA3-201ENST00000298260 LINC00311Q8N616 119 aa10.37□□□□□ -0.75
SKA3-201ENST00000298260 RASL10AQ92737 203 aa10.37□□□□□ -0.75
SKA3-201ENST00000298260 TMEM178BH3BS89 294 aa10.36□□□□□ -0.75
SKA3-201ENST00000298260 UBE2D1P51668 147 aa10.36□□□□□ -0.75
SKA3-201ENST00000298260 UBE2D3P61077 147 aa10.36□□□□□ -0.75
SKA3-201ENST00000298260 UBE2D2P62837 147 aa10.36□□□□□ -0.75
SKA3-201ENST00000298260 TMEM155Q4W5P6 130 aa10.36□□□□□ -0.75
SKA3-201ENST00000298260 TRBV7-9A0A0J9YWB2 115 aa10.36□□□□□ -0.75
SKA3-201ENST00000298260 C17orf100A8MU93 164 aa10.36□□□□□ -0.75
SKA3-201ENST00000298260 A8MWV9 139 aa10.36□□□□□ -0.75
SKA3-201ENST00000298260 F8W735 103 aaPredicted RBP10.36□□□□□ -0.75
SKA3-201ENST00000298260 THBDP07204 575 aa10.36□□□□□ -0.75
SKA3-201ENST00000298260 CD7P09564 240 aa10.36□□□□□ -0.75
SKA3-201ENST00000298260 SPTBN1Q01082 2364 aaKnown RBP10.36□□□□□ -0.75
SKA3-201ENST00000298260 TRAV8-2A0A0B4J237 113 aa10.35□□□□□ -0.75
SKA3-201ENST00000298260 NDUFA11Q86Y39 141 aa10.35□□□□□ -0.75
SKA3-201ENST00000298260 TIMM23O14925 209 aa10.35□□□□□ -0.75
SKA3-201ENST00000298260 ADIPOQQ15848 244 aa10.35□□□□□ -0.75
SKA3-201ENST00000298260 SPANXN1Q5VSR9 72 aa10.35□□□□□ -0.75
SKA3-201ENST00000298260 CNFNQ9BYD5 112 aa10.35□□□□□ -0.75
SKA3-201ENST00000298260 C9JAW5 83 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 BUB1B-PAK6H3BSN5 160 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 PDE6HQ13956 83 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 IGF1P05019 195 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 CFC1BP0CG36 223 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 CFC1P0CG37 223 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 PSMG4Q5JS54 123 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 M0R381 172 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 ELANEP08246 267 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 NEXN-AS1Q8NBZ9 246 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 OR11H6Q8NGC7 330 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 FANCD2OSQ96PS1 177 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 CITED1Q99966 193 aa10.34□□□□□ -0.75
SKA3-201ENST00000298260 PKD1L2Q7Z442 2459 aa10.33□□□□□ -0.76
SKA3-201ENST00000298260 IGLV1-47P01700 117 aa10.33□□□□□ -0.76
SKA3-201ENST00000298260 BAALCQ8WXS3 180 aa10.33□□□□□ -0.76
SKA3-201ENST00000298260 FAM215AQ9Y5M1 114 aa10.33□□□□□ -0.76
SKA3-201ENST00000298260 IGHV7-4-1A0A0J9YVY3 117 aa10.33□□□□□ -0.76
SKA3-201ENST00000298260 NDUFV3P56181 108 aaKnown RBP10.33□□□□□ -0.76
SKA3-201ENST00000298260 TSPEAR-AS2P59090 65 aa10.33□□□□□ -0.76
SKA3-201ENST00000298260 HES1Q14469 280 aa10.33□□□□□ -0.76
SKA3-201ENST00000298260 AGPAT4-IT1Q9H0P7 198 aa10.33□□□□□ -0.76
SKA3-201ENST00000298260 DEFB1P60022 68 aa10.32□□□□□ -0.76
SKA3-201ENST00000298260 RPL32P62910 135 aaKnown RBP10.32□□□□□ -0.76
SKA3-201ENST00000298260 SMIM2Q9BVW6 85 aa10.32□□□□□ -0.76
SKA3-201ENST00000298260 MAP1AP78559 2803 aaPredicted RBP10.32□□□□□ -0.76
SKA3-201ENST00000298260 BRI3O95415 125 aa10.32□□□□□ -0.76
SKA3-201ENST00000298260 RPL7P18124 248 aaKnown RBP10.32□□□□□ -0.76
SKA3-201ENST00000298260 NDPQ00604 133 aa10.32□□□□□ -0.76
SKA3-201ENST00000298260 GAGE2BQ13066 116 aa10.32□□□□□ -0.76
SKA3-201ENST00000298260 LINC01559Q495D7 138 aa10.32□□□□□ -0.76
SKA3-201ENST00000298260 GAGE2EQ4V326 116 aa10.32□□□□□ -0.76
SKA3-201ENST00000298260 BEX4Q9NWD9 120 aaPredicted RBP10.32□□□□□ -0.76
SKA3-201ENST00000298260 GAGE2DQ9UEU5 116 aa10.32□□□□□ -0.76
SKA3-201ENST00000298260 A6NJY4 79 aa10.31□□□□□ -0.76
SKA3-201ENST00000298260 COX6B1P14854 86 aa10.31□□□□□ -0.76
SKA3-201ENST00000298260 FAM159AQ6UWV7 190 aa10.31□□□□□ -0.76
SKA3-201ENST00000298260 C2orf66Q6UXQ4 117 aa10.31□□□□□ -0.76
SKA3-201ENST00000298260 MSRB2Q9Y3D2 182 aa10.31□□□□□ -0.76
SKA3-201ENST00000298260 CELSR1Q9NYQ6 3014 aa10.31□□□□□ -0.76
SKA3-201ENST00000298260 C11orf86A6NJI1 115 aa10.31□□□□□ -0.76
SKA3-201ENST00000298260 SLC25A20O43772 301 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 102 ms