RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 SSBP4Q9BWG4 385 aaPredicted RBP10.81□□□□□ -0.68
C9orf3-202ENST00000297979 RNASE1P07998 156 aaKnown RBP10.8□□□□□ -0.68
C9orf3-202ENST00000297979 TMEM136Q6ZRR5 245 aa10.8□□□□□ -0.68
C9orf3-202ENST00000297979 WIPF2Q8TF74 440 aaPredicted RBP10.8□□□□□ -0.68
C9orf3-202ENST00000297979 SIGMAR1Q99720 223 aa10.8□□□□□ -0.68
C9orf3-202ENST00000297979 ATP5L2Q7Z4Y8 100 aa10.8□□□□□ -0.68
C9orf3-202ENST00000297979 ZNF418Q8TF45 676 aaPredicted RBP10.8□□□□□ -0.68
C9orf3-202ENST00000297979 SH2D1AO60880 128 aa10.8□□□□□ -0.68
C9orf3-202ENST00000297979 TMEM78Q5T7P6 136 aa10.8□□□□□ -0.68
C9orf3-202ENST00000297979 RBPMS2Q6ZRY4 209 aaKnown RBP10.8□□□□□ -0.68
C9orf3-202ENST00000297979 C18orf65Q6ZTR6 163 aa10.8□□□□□ -0.68
C9orf3-202ENST00000297979 C4orf3Q8WVX3 66 aa10.8□□□□□ -0.68
C9orf3-202ENST00000297979 AGPAT4-IT1Q9H0P7 198 aa10.8□□□□□ -0.68
C9orf3-202ENST00000297979 IGKV3-7A0A075B6H7 116 aa10.79□□□□□ -0.68
C9orf3-202ENST00000297979 HLA-DQA1P01909 254 aa10.79□□□□□ -0.68
C9orf3-202ENST00000297979 KHDC1LQ5JSQ8 128 aa10.79□□□□□ -0.68
C9orf3-202ENST00000297979 C9orf47Q6ZRZ4 202 aa10.79□□□□□ -0.68
C9orf3-202ENST00000297979 MIEN1Q9BRT3 115 aa10.79□□□□□ -0.68
C9orf3-202ENST00000297979 ACANP16112 2415 aa10.79□□□□□ -0.68
C9orf3-202ENST00000297979 ZNF138P52744 262 aa10.79□□□□□ -0.68
C9orf3-202ENST00000297979 RNASEKQ6P5S7 137 aaKnown RBP10.79□□□□□ -0.68
C9orf3-202ENST00000297979 PGLYRP4Q96LB8 373 aa10.79□□□□□ -0.68
C9orf3-202ENST00000297979 SELENOKQ9Y6D0 94 aa10.79□□□□□ -0.68
C9orf3-202ENST00000297979 TDRG1Q3Y452 100 aa10.78□□□□□ -0.68
C9orf3-202ENST00000297979 LY6G6DO95868 133 aa10.78□□□□□ -0.68
C9orf3-202ENST00000297979 ZNF80P51504 273 aaPredicted RBP10.78□□□□□ -0.68
C9orf3-202ENST00000297979 DEFB136Q30KP8 78 aa10.78□□□□□ -0.68
C9orf3-202ENST00000297979 COA6Q5JTJ3 125 aaKnown RBP10.78□□□□□ -0.68
C9orf3-202ENST00000297979 A0A1B0GXF2 115 aa10.77□□□□□ -0.68
C9orf3-202ENST00000297979 LINC01619G3V211 115 aa10.77□□□□□ -0.68
C9orf3-202ENST00000297979 OVOL1O14753 267 aa10.77□□□□□ -0.68
C9orf3-202ENST00000297979 HILS1P60008 231 aa10.77□□□□□ -0.68
C9orf3-202ENST00000297979 KLF5Q13887 457 aaPredicted RBP10.77□□□□□ -0.68
C9orf3-202ENST00000297979 TMEM189A5PLL7 270 aa10.77□□□□□ -0.69
C9orf3-202ENST00000297979 FOXA3P55318 350 aaPredicted RBP10.77□□□□□ -0.69
C9orf3-202ENST00000297979 ANK3Q12955 4377 aaKnown RBP10.77□□□□□ -0.69
C9orf3-202ENST00000297979 PF4P02776 101 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 SLURP1P55000 103 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 HBBP68871 147 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 VAMP3Q15836 100 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 IQCJQ1A5X6 159 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 NIT1Q86X76 327 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 KLHL30-AS1Q8NEE0 82 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 OR10J6PQ8NGY7 276 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 MYO9AB2RTY4 2548 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 C2orf70A6NJV1 201 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 Q6AWC8 147 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 DCANP1Q8TF63 244 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 C20orf144Q9BQM9 153 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 C16orf95Q9H693 158 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 CAMPP49913 170 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 PAFAH1B2P68402 229 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 GDF5OSQ5U4N7 250 aa10.76□□□□□ -0.69
C9orf3-202ENST00000297979 FABP5P3A8MUU1 101 aa10.75□□□□□ -0.69
C9orf3-202ENST00000297979 APCSP02743 223 aa10.75□□□□□ -0.69
C9orf3-202ENST00000297979 ZNF705DP0CH99 300 aaPredicted RBP10.75□□□□□ -0.69
C9orf3-202ENST00000297979 ZNF705BP0CI00 300 aaPredicted RBP10.75□□□□□ -0.69
C9orf3-202ENST00000297979 ESDP10768 282 aa10.75□□□□□ -0.69
C9orf3-202ENST00000297979 LENEPQ9Y5L5 61 aa10.75□□□□□ -0.69
C9orf3-202ENST00000297979 GAGE12BA1L429 117 aa10.75□□□□□ -0.69
C9orf3-202ENST00000297979 SRSF2Q01130 221 aaKnown RBP10.75□□□□□ -0.69
C9orf3-202ENST00000297979 LINC00477Q96M19 166 aa10.75□□□□□ -0.69
C9orf3-202ENST00000297979 MAP1LC3CQ9BXW4 147 aa10.75□□□□□ -0.69
C9orf3-202ENST00000297979 MS4A6AQ9H2W1 248 aa10.75□□□□□ -0.69
C9orf3-202ENST00000297979 TMSB15BA0A087X1C1 80 aa10.74□□□□□ -0.69
C9orf3-202ENST00000297979 CRISP2P16562 243 aa10.74□□□□□ -0.69
C9orf3-202ENST00000297979 GRIFINA4D1Z8 144 aa10.74□□□□□ -0.69
C9orf3-202ENST00000297979 GAGE5Q13069 117 aa10.74□□□□□ -0.69
C9orf3-202ENST00000297979 GAGE6Q13070 117 aa10.74□□□□□ -0.69
C9orf3-202ENST00000297979 WFDC3Q8IUB2 231 aa10.74□□□□□ -0.69
C9orf3-202ENST00000297979 LINC01006Q8NI28 216 aa10.74□□□□□ -0.69
C9orf3-202ENST00000297979 HAX1O00165 279 aa10.73□□□□□ -0.69
C9orf3-202ENST00000297979 KIAA1644Q3SXP7 199 aa10.73□□□□□ -0.69
C9orf3-202ENST00000297979 OR8A1Q8NGG7 326 aa10.73□□□□□ -0.69
C9orf3-202ENST00000297979 DUX3Q96PT4 197 aa10.73□□□□□ -0.69
C9orf3-202ENST00000297979 JMJD8Q96S16 334 aa10.73□□□□□ -0.69
C9orf3-202ENST00000297979 A0A1B0GUT8 65 aa10.73□□□□□ -0.69
C9orf3-202ENST00000297979 B5MCH6 92 aa10.73□□□□□ -0.69
C9orf3-202ENST00000297979 DEFB1P60022 68 aa10.73□□□□□ -0.69
C9orf3-202ENST00000297979 HIST1H1AQ02539 215 aaPredicted RBP10.73□□□□□ -0.69
C9orf3-202ENST00000297979 PEMTQ9UBM1 199 aa10.73□□□□□ -0.69
C9orf3-202ENST00000297979 ORM1P02763 201 aa10.72□□□□□ -0.69
C9orf3-202ENST00000297979 LINC01559Q495D7 138 aa10.72□□□□□ -0.69
C9orf3-202ENST00000297979 BORCS7Q96B45 105 aa10.72□□□□□ -0.69
C9orf3-202ENST00000297979 F6UB75 175 aa10.72□□□□□ -0.69
C9orf3-202ENST00000297979 ARMS2P0C7Q2 107 aa10.72□□□□□ -0.69
C9orf3-202ENST00000297979 RIGQ13278 110 aa10.72□□□□□ -0.69
C9orf3-202ENST00000297979 HIST2H2BDQ6DRA6 164 aa10.72□□□□□ -0.69
C9orf3-202ENST00000297979 OR9G4Q8NGQ1 327 aa10.72□□□□□ -0.69
C9orf3-202ENST00000297979 SMIM9A6NGZ8 99 aa10.71□□□□□ -0.69
C9orf3-202ENST00000297979 CD28P10747 220 aa10.71□□□□□ -0.69
C9orf3-202ENST00000297979 ADAMTSL5Q6ZMM2 481 aa10.71□□□□□ -0.69
C9orf3-202ENST00000297979 K7EQG2 157 aa10.71□□□□□ -0.69
C9orf3-202ENST00000297979 SRIP30626 198 aa10.71□□□□□ -0.69
C9orf3-202ENST00000297979 C11orf44Q8N8P7 122 aa10.71□□□□□ -0.69
C9orf3-202ENST00000297979 NDUFA7O95182 113 aa10.71□□□□□ -0.7
C9orf3-202ENST00000297979 SNRPD3P62318 126 aaKnown RBP10.71□□□□□ -0.7
C9orf3-202ENST00000297979 Q0VG73 95 aa10.71□□□□□ -0.7
C9orf3-202ENST00000297979 LYZL1Q6UWQ5 148 aa10.71□□□□□ -0.7
C9orf3-202ENST00000297979 DLX4Q92988 240 aaPredicted RBP10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms