RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZC2HC1AQ96GY0 325 aa15.08■□□□□ 0
UPF1-201ENST00000262803 IGLL1P15814 213 aa15.08■□□□□ 0
UPF1-201ENST00000262803 ZNF491Q8N8L2 437 aa15.08■□□□□ 0
UPF1-201ENST00000262803 IGFBPL1Q8WX77 278 aa15.08■□□□□ 0
UPF1-201ENST00000262803 MAJINQ3KP22 176 aa15.08■□□□□ 0
UPF1-201ENST00000262803 C11orf53Q8IXP5 236 aa15.08■□□□□ 0
UPF1-201ENST00000262803 CITED1Q99966 193 aa15.07■□□□□ 0
UPF1-201ENST00000262803 TRAV25A0A0B4J276 109 aa15.07■□□□□ 0
UPF1-201ENST00000262803 ZGRF1Q86YA3 2104 aa15.07■□□□□ 0
UPF1-201ENST00000262803 GTSF1LQ9H1H1 148 aa15.07■□□□□ 0
UPF1-201ENST00000262803 CENPVL3A0A0U1RRI6 287 aa15.07■□□□□ 0
UPF1-201ENST00000262803 SIVA1O15304 175 aa15.07■□□□□ 0
UPF1-201ENST00000262803 LHBP01229 141 aa15.07■□□□□ 0
UPF1-201ENST00000262803 LTAP01374 205 aa15.07■□□□□ 0
UPF1-201ENST00000262803 TTC28Q96AY4 2481 aa15.07■□□□□ 0
UPF1-201ENST00000262803 MRPL23Q16540 153 aaKnown RBP15.07■□□□□ 0
UPF1-201ENST00000262803 ADAMTSL5Q6ZMM2 481 aa15.07■□□□□ 0
UPF1-201ENST00000262803 RNF138Q8WVD3 245 aa15.07■□□□□ 0
UPF1-201ENST00000262803 ZNF625Q96I27 306 aaPredicted RBP15.07■□□□□ 0
UPF1-201ENST00000262803 FGF23Q9GZV9 251 aaPredicted RBP15.07■□□□□ 0
UPF1-201ENST00000262803 ICOSQ9Y6W8 199 aa15.06■□□□□ 0
UPF1-201ENST00000262803 PCNX2A6NKB5 2137 aa15.06■□□□□ 0
UPF1-201ENST00000262803 SIGLEC8Q9NYZ4 499 aa15.06■□□□□ 0
UPF1-201ENST00000262803 TRAV12-2A0A075B6T6 113 aa15.06■□□□□ 0
UPF1-201ENST00000262803 FAM120AOSQ5T036 256 aa15.06■□□□□ 0
UPF1-201ENST00000262803 MED13Q9UHV7 2174 aa15.05■□□□□ 0
UPF1-201ENST00000262803 SPART-AS1P0CW21 52 aa15.05■□□□□ 0
UPF1-201ENST00000262803 K7EN84 100 aa15.05■□□□□ -0
UPF1-201ENST00000262803 SPANXCQ9NY87 97 aa15.05■□□□□ -0
UPF1-201ENST00000262803 TRAV26-2A0A0B4J265 109 aa15.05■□□□□ -0
UPF1-201ENST00000262803 C1orf43Q9BWL3 253 aa15.05■□□□□ -0
UPF1-201ENST00000262803 TANC1Q9C0D5 1861 aa15.04■□□□□ -0
UPF1-201ENST00000262803 UBE2BP63146 152 aa15.04■□□□□ -0
UPF1-201ENST00000262803 PPDPFLQ8WWR9 84 aa15.04■□□□□ -0
UPF1-201ENST00000262803 CCL18P55774 89 aa15.04■□□□□ -0
UPF1-201ENST00000262803 SUMO4Q6EEV6 95 aa15.04■□□□□ -0
UPF1-201ENST00000262803 BDP1A6H8Y1 2624 aa15.04■□□□□ -0
UPF1-201ENST00000262803 NPYP01303 97 aa15.04■□□□□ -0
UPF1-201ENST00000262803 LYPD6Q86Y78 171 aa15.04■□□□□ -0
UPF1-201ENST00000262803 ATP5G1P05496 136 aa15.04■□□□□ -0
UPF1-201ENST00000262803 DENND4CQ5VZ89 1909 aa15.04■□□□□ -0
UPF1-201ENST00000262803 BVES-AS1Q5T3Y7 98 aa15.03■□□□□ -0
UPF1-201ENST00000262803 SLC25A29Q8N8R3 303 aa15.03■□□□□ -0
UPF1-201ENST00000262803 PRO1854Q9UHT4 67 aa15.03■□□□□ -0
UPF1-201ENST00000262803 COX8AP10176 69 aa15.03■□□□□ -0
UPF1-201ENST00000262803 IL17DQ8TAD2 202 aa15.03■□□□□ -0
UPF1-201ENST00000262803 KIAA1671Q9BY89 1806 aa15.03■□□□□ -0
UPF1-201ENST00000262803 IGLC7A0M8Q6 106 aa15.02■□□□□ -0
UPF1-201ENST00000262803 PRSS47A8MTI9 375 aa15.02■□□□□ -0
UPF1-201ENST00000262803 J3QQQ9 107 aa15.02■□□□□ -0
UPF1-201ENST00000262803 IGHV4-59P01825 116 aa15.02■□□□□ -0
UPF1-201ENST00000262803 WIPF2Q8TF74 440 aaPredicted RBP15.02■□□□□ -0
UPF1-201ENST00000262803 MYCNOSP40205 109 aa15.02■□□□□ -0
UPF1-201ENST00000262803 IGKV2D-24A0A075B6R9 120 aa15.02□□□□□ -0.01
UPF1-201ENST00000262803 U3KQE9 123 aa15.02□□□□□ -0.01
UPF1-201ENST00000262803 TCF15Q12870 199 aa15.02□□□□□ -0.01
UPF1-201ENST00000262803 F8W1H4 67 aa15.01□□□□□ -0.01
UPF1-201ENST00000262803 GP9P14770 177 aa15.01□□□□□ -0.01
UPF1-201ENST00000262803 CTSZQ9UBR2 303 aa15.01□□□□□ -0.01
UPF1-201ENST00000262803 HLA-DMBP28068 263 aa15.01□□□□□ -0.01
UPF1-201ENST00000262803 Q6ZSR3 168 aa15.01□□□□□ -0.01
UPF1-201ENST00000262803 FRMPD3Q5JV73 1810 aa15.01□□□□□ -0.01
UPF1-201ENST00000262803 C10orf105Q8TEF2 133 aa15.01□□□□□ -0.01
UPF1-201ENST00000262803 ZFHX2Q9C0A1 2572 aaPredicted RBP15.01□□□□□ -0.01
UPF1-201ENST00000262803 C9orf118A6NHY6 69 aa15.01□□□□□ -0.01
UPF1-201ENST00000262803 DAZ2Q13117 558 aaKnown RBP15.01□□□□□ -0.01
UPF1-201ENST00000262803 DAZ4Q86SG3 579 aaKnown RBP15.01□□□□□ -0.01
UPF1-201ENST00000262803 DAZ3Q9NR90 486 aaKnown RBP15.01□□□□□ -0.01
UPF1-201ENST00000262803 IGHV3-38A0A0C4DH36 116 aa15□□□□□ -0.01
UPF1-201ENST00000262803 MRPL35Q9NZE8 188 aaKnown RBP15□□□□□ -0.01
UPF1-201ENST00000262803 DKK4Q9UBT3 224 aa15□□□□□ -0.01
UPF1-201ENST00000262803 C17orf77Q96MU5 243 aa15□□□□□ -0.01
UPF1-201ENST00000262803 NOP10Q9NPE3 64 aaKnown RBP15□□□□□ -0.01
UPF1-201ENST00000262803 NXPH4O95158 308 aa15□□□□□ -0.01
UPF1-201ENST00000262803 K7EMT4 169 aa15□□□□□ -0.01
UPF1-201ENST00000262803 TM2D2Q9BX73 214 aa14.99□□□□□ -0.01
UPF1-201ENST00000262803 IFITM1P13164 125 aa14.99□□□□□ -0.01
UPF1-201ENST00000262803 KRTAP27-1Q3LI81 207 aa14.99□□□□□ -0.01
UPF1-201ENST00000262803 CFHR4Q92496 578 aa14.98□□□□□ -0.01
UPF1-201ENST00000262803 NPSP0C0P6 89 aa14.98□□□□□ -0.01
UPF1-201ENST00000262803 SPINK8P0C7L1 97 aa14.98□□□□□ -0.01
UPF1-201ENST00000262803 FAM208BQ5VWN6 2430 aa14.98□□□□□ -0.01
UPF1-201ENST00000262803 FGF6P10767 208 aa14.97□□□□□ -0.01
UPF1-201ENST00000262803 INSL3P51460 131 aa14.97□□□□□ -0.01
UPF1-201ENST00000262803 IGKV1OR2-108A0A075B7D4 117 aa14.97□□□□□ -0.01
UPF1-201ENST00000262803 K7EQD1 137 aa14.97□□□□□ -0.01
UPF1-201ENST00000262803 PLA2G2EQ9NZK7 142 aa14.97□□□□□ -0.01
UPF1-201ENST00000262803 SPRNQ5BIV9 151 aa14.97□□□□□ -0.01
UPF1-201ENST00000262803 AGPAT4-IT1Q9H0P7 198 aa14.97□□□□□ -0.01
UPF1-201ENST00000262803 KLK5Q9Y337 293 aaPredicted RBP14.97□□□□□ -0.01
UPF1-201ENST00000262803 PIFOQ8TCI5 191 aa14.96□□□□□ -0.01
UPF1-201ENST00000262803 WT1P19544 449 aaPredicted RBP14.96□□□□□ -0.01
UPF1-201ENST00000262803 Q6ZVH6 145 aa14.96□□□□□ -0.01
UPF1-201ENST00000262803 CEND1Q8N111 149 aa14.96□□□□□ -0.01
UPF1-201ENST00000262803 IGHV4-61A0A0C4DH41 118 aa14.96□□□□□ -0.02
UPF1-201ENST00000262803 MED14OSP0DP75 135 aa14.96□□□□□ -0.02
UPF1-201ENST00000262803 MRPL36Q9P0J6 103 aaKnown RBP14.95□□□□□ -0.02
UPF1-201ENST00000262803 ATP6V0E2Q8NHE4 81 aa14.95□□□□□ -0.02
UPF1-201ENST00000262803 IGHG4P01861 327 aa14.95□□□□□ -0.02
UPF1-201ENST00000262803 DYNAPQ8N1N2 210 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms