RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 RPL39LQ96EH5 51 aaKnown RBP11.09□□□□□ -0.63
SDC1-201ENST00000254351 PRADC1Q9BSG0 188 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 C1QTNF4Q9BXJ3 329 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 C21orf62Q9NYP8 219 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 ANKHD1Q8IWZ3 2542 aaKnown RBP11.09□□□□□ -0.63
SDC1-201ENST00000254351 MGPP08493 103 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 LGALS1P09382 135 aaKnown RBP11.09□□□□□ -0.63
SDC1-201ENST00000254351 Q6ZUT4 128 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 RAX2Q96IS3 184 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 TRBV6-1A0A0K0K1D8 114 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 CEACAM4O75871 244 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 IGF1P05019 195 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 RPL7P18124 248 aaKnown RBP11.09□□□□□ -0.63
SDC1-201ENST00000254351 MFAP4P55083 255 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 ANAPC13Q9BS18 74 aa11.09□□□□□ -0.63
SDC1-201ENST00000254351 TRBV7-3A0A075B6L6 115 aa11.08□□□□□ -0.64
SDC1-201ENST00000254351 IGLV1-47P01700 117 aa11.08□□□□□ -0.64
SDC1-201ENST00000254351 NDPQ00604 133 aa11.08□□□□□ -0.64
SDC1-201ENST00000254351 DLX4Q92988 240 aaPredicted RBP11.08□□□□□ -0.64
SDC1-201ENST00000254351 RNASE6Q93091 150 aaKnown RBP11.07□□□□□ -0.64
SDC1-201ENST00000254351 CFAP126Q5VTH2 177 aa11.07□□□□□ -0.64
SDC1-201ENST00000254351 FANCD2OSQ96PS1 177 aa11.07□□□□□ -0.64
SDC1-201ENST00000254351 TSPAN13O95857 204 aa11.07□□□□□ -0.64
SDC1-201ENST00000254351 C14orf178Q8N769 122 aaPredicted RBP11.07□□□□□ -0.64
SDC1-201ENST00000254351 IGHV3-64A0A075B6Q5 118 aa11.06□□□□□ -0.64
SDC1-201ENST00000254351 SRSF1Q07955 248 aaKnown RBP eCLIP11.06□□□□□ -0.64
SDC1-201ENST00000254351 ECSCRQ19T08 205 aa11.06□□□□□ -0.64
SDC1-201ENST00000254351 CARD19Q96LW7 228 aa11.06□□□□□ -0.64
SDC1-201ENST00000254351 CREBBPQ92793 2442 aa11.06□□□□□ -0.64
SDC1-201ENST00000254351 IGLV2-18A0A075B6J9 118 aa11.06□□□□□ -0.64
SDC1-201ENST00000254351 F8W735 103 aaPredicted RBP11.06□□□□□ -0.64
SDC1-201ENST00000254351 NBR2O15453 112 aa11.06□□□□□ -0.64
SDC1-201ENST00000254351 TCTEX1D4Q5JR98 221 aa11.06□□□□□ -0.64
SDC1-201ENST00000254351 BEX4Q9NWD9 120 aaPredicted RBP11.06□□□□□ -0.64
SDC1-201ENST00000254351 F8VRH5 84 aa11.05□□□□□ -0.64
SDC1-201ENST00000254351 H7C1H1 209 aa11.05□□□□□ -0.64
SDC1-201ENST00000254351 ZNF48Q96MX3 618 aaPredicted RBP11.05□□□□□ -0.64
SDC1-201ENST00000254351 AGPAT4-IT1Q9H0P7 198 aa11.05□□□□□ -0.64
SDC1-201ENST00000254351 TCL1BO95988 128 aa11.05□□□□□ -0.64
SDC1-201ENST00000254351 PLNP26678 52 aa11.05□□□□□ -0.64
SDC1-201ENST00000254351 PDE6HQ13956 83 aa11.05□□□□□ -0.64
SDC1-201ENST00000254351 NRACQ8N912 160 aa11.05□□□□□ -0.64
SDC1-201ENST00000254351 MSRB2Q9Y3D2 182 aa11.05□□□□□ -0.64
SDC1-201ENST00000254351 BSNQ9UPA5 3926 aa11.05□□□□□ -0.64
SDC1-201ENST00000254351 CTSGP08311 255 aa11.04□□□□□ -0.64
SDC1-201ENST00000254351 CLEC3BP05452 202 aa11.04□□□□□ -0.64
SDC1-201ENST00000254351 THBDP07204 575 aa11.03□□□□□ -0.64
SDC1-201ENST00000254351 S100A4P26447 101 aaKnown RBP11.03□□□□□ -0.64
SDC1-201ENST00000254351 Q6ZS46 218 aa11.03□□□□□ -0.64
SDC1-201ENST00000254351 TRPT1Q86TN4 253 aaKnown RBP11.03□□□□□ -0.64
SDC1-201ENST00000254351 PIFOQ8TCI5 191 aa11.03□□□□□ -0.64
SDC1-201ENST00000254351 SORL1Q92673 2214 aa11.03□□□□□ -0.64
SDC1-201ENST00000254351 A0A0G2JNJ9 132 aa11.02□□□□□ -0.64
SDC1-201ENST00000254351 C3orf56Q8N813 242 aa11.02□□□□□ -0.64
SDC1-201ENST00000254351 Q9UFV3 132 aa11.02□□□□□ -0.64
SDC1-201ENST00000254351 SHISA9B4DS77 424 aa11.02□□□□□ -0.65
SDC1-201ENST00000254351 CRIP2P52943 208 aaPredicted RBP11.02□□□□□ -0.65
SDC1-201ENST00000254351 ANKRD29Q8N6D5 301 aa11.02□□□□□ -0.65
SDC1-201ENST00000254351 RAB1BQ9H0U4 201 aa11.02□□□□□ -0.65
SDC1-201ENST00000254351 ATRXP46100 2492 aa11.02□□□□□ -0.65
SDC1-201ENST00000254351 TRAV8-2A0A0B4J237 113 aa11.02□□□□□ -0.65
SDC1-201ENST00000254351 E7EQL1 145 aa11.02□□□□□ -0.65
SDC1-201ENST00000254351 TMEM170BQ5T4T1 132 aa11.02□□□□□ -0.65
SDC1-201ENST00000254351 C2orf66Q6UXQ4 117 aa11.02□□□□□ -0.65
SDC1-201ENST00000254351 LINC00527Q9UJ94 153 aa11.02□□□□□ -0.65
SDC1-201ENST00000254351 IGFL2Q6UWQ7 119 aa11.01□□□□□ -0.65
SDC1-201ENST00000254351 CLEC19AQ6UXS0 136 aa11.01□□□□□ -0.65
SDC1-201ENST00000254351 C15orf32Q32M92 178 aa11.01□□□□□ -0.65
SDC1-201ENST00000254351 RASL10AQ92737 203 aa11.01□□□□□ -0.65
SDC1-201ENST00000254351 C9JAW5 83 aa11□□□□□ -0.65
SDC1-201ENST00000254351 DUSP14O95147 198 aaKnown RBP11□□□□□ -0.65
SDC1-201ENST00000254351 TAL2Q16559 108 aa11□□□□□ -0.65
SDC1-201ENST00000254351 NUP37Q8NFH4 326 aa11□□□□□ -0.65
SDC1-201ENST00000254351 SMIM2Q9BVW6 85 aa11□□□□□ -0.65
SDC1-201ENST00000254351 IGLV11-55A0A075B6I3 123 aa11□□□□□ -0.65
SDC1-201ENST00000254351 RPL11P62913 178 aaKnown RBP11□□□□□ -0.65
SDC1-201ENST00000254351 PRR9Q5T870 116 aa11□□□□□ -0.65
SDC1-201ENST00000254351 BAALCQ8WXS3 180 aa11□□□□□ -0.65
SDC1-201ENST00000254351 IGHV7-4-1A0A0J9YVY3 117 aa11□□□□□ -0.65
SDC1-201ENST00000254351 TNFRSF13BO14836 293 aaPredicted RBP11□□□□□ -0.65
SDC1-201ENST00000254351 C5orf64Q2M2E5 130 aa11□□□□□ -0.65
SDC1-201ENST00000254351 TEX29Q8N6K0 151 aa11□□□□□ -0.65
SDC1-201ENST00000254351 A8MWV9 139 aa10.99□□□□□ -0.65
SDC1-201ENST00000254351 RPL39P62891 51 aaKnown RBP10.99□□□□□ -0.65
SDC1-201ENST00000254351 Q1RN00 199 aa10.99□□□□□ -0.65
SDC1-201ENST00000254351 IGHV4-39P01824 125 aa10.99□□□□□ -0.65
SDC1-201ENST00000254351 SUMO2P61956 95 aaKnown RBP10.99□□□□□ -0.65
SDC1-201ENST00000254351 LINC01559Q495D7 138 aa10.99□□□□□ -0.65
SDC1-201ENST00000254351 C8orf31Q8N9H6 132 aa10.99□□□□□ -0.65
SDC1-201ENST00000254351 VSTM5A8MXK1 200 aa10.98□□□□□ -0.65
SDC1-201ENST00000254351 PPDPFLQ8WWR9 84 aa10.98□□□□□ -0.65
SDC1-201ENST00000254351 AJUBAQ96IF1 538 aa10.98□□□□□ -0.65
SDC1-201ENST00000254351 DPM3Q9P2X0 92 aa10.98□□□□□ -0.65
SDC1-201ENST00000254351 TMEM238LA0A1B0GVL6 79 aa10.98□□□□□ -0.65
SDC1-201ENST00000254351 A6NJY4 79 aa10.98□□□□□ -0.65
SDC1-201ENST00000254351 G3V318 75 aa10.98□□□□□ -0.65
SDC1-201ENST00000254351 ZFAND6Q6FIF0 208 aa10.98□□□□□ -0.65
SDC1-201ENST00000254351 TEN1Q86WV5 123 aa10.98□□□□□ -0.65
SDC1-201ENST00000254351 LINC01560Q8TB33 94 aa10.98□□□□□ -0.65
SDC1-201ENST00000254351 ERG28Q9UKR5 140 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms