RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 LINC00477Q96M19 166 aa12.52□□□□□ -0.41
HOXD3-201ENST00000249440 PIMREGQ9BSJ6 248 aa12.52□□□□□ -0.41
HOXD3-201ENST00000249440 SMPXQ9UHP9 88 aa12.52□□□□□ -0.41
HOXD3-201ENST00000249440 PCP2Q8IVA1 136 aa12.51□□□□□ -0.41
HOXD3-201ENST00000249440 ATP5LO75964 103 aa12.51□□□□□ -0.41
HOXD3-201ENST00000249440 LAGE3Q14657 143 aa12.51□□□□□ -0.41
HOXD3-201ENST00000249440 UNQ9165/PRO28630Q6UXU0 137 aa12.51□□□□□ -0.41
HOXD3-201ENST00000249440 ADAMTSL5Q6ZMM2 481 aa12.51□□□□□ -0.41
HOXD3-201ENST00000249440 Q6ZQT7 251 aa12.51□□□□□ -0.41
HOXD3-201ENST00000249440 NRACQ8N912 160 aa12.51□□□□□ -0.41
HOXD3-201ENST00000249440 C20orf173Q96LM9 149 aa12.51□□□□□ -0.41
HOXD3-201ENST00000249440 IGKCP01834 107 aa12.5□□□□□ -0.41
HOXD3-201ENST00000249440 OR10J6PQ8NGY7 276 aa12.5□□□□□ -0.41
HOXD3-201ENST00000249440 USMG5Q96IX5 58 aa12.5□□□□□ -0.41
HOXD3-201ENST00000249440 HHLA3Q9XRX5 114 aa12.5□□□□□ -0.41
HOXD3-201ENST00000249440 TRAV8-6A0A0B4J262 113 aa12.5□□□□□ -0.41
HOXD3-201ENST00000249440 TRAV26-2A0A0B4J265 109 aa12.5□□□□□ -0.41
HOXD3-201ENST00000249440 H3BUA1 57 aa12.5□□□□□ -0.41
HOXD3-201ENST00000249440 H3BVH4 76 aa12.5□□□□□ -0.41
HOXD3-201ENST00000249440 OVOL1O14753 267 aa12.5□□□□□ -0.41
HOXD3-201ENST00000249440 BRI3O95415 125 aa12.5□□□□□ -0.41
HOXD3-201ENST00000249440 SMIM17P0DL12 118 aa12.5□□□□□ -0.41
HOXD3-201ENST00000249440 IGHV4-61A0A0C4DH41 118 aa12.49□□□□□ -0.41
HOXD3-201ENST00000249440 H3BRM9 83 aa12.49□□□□□ -0.41
HOXD3-201ENST00000249440 TRBV12-3P01733 135 aa12.49□□□□□ -0.41
HOXD3-201ENST00000249440 PRR9Q5T870 116 aa12.49□□□□□ -0.41
HOXD3-201ENST00000249440 MYOZ3Q8TDC0 251 aa12.49□□□□□ -0.41
HOXD3-201ENST00000249440 FOXC2Q99958 501 aa12.49□□□□□ -0.41
HOXD3-201ENST00000249440 GCN1Q92616 2671 aaKnown RBP12.49□□□□□ -0.41
HOXD3-201ENST00000249440 GPHB5Q86YW7 130 aa12.49□□□□□ -0.41
HOXD3-201ENST00000249440 MRAP2Q96G30 205 aa12.49□□□□□ -0.41
HOXD3-201ENST00000249440 AP1S3Q96PC3 154 aa12.49□□□□□ -0.41
HOXD3-201ENST00000249440 TRAV21A0A0B4J279 112 aa12.48□□□□□ -0.41
HOXD3-201ENST00000249440 IGHG2P01859 326 aa12.48□□□□□ -0.41
HOXD3-201ENST00000249440 LY6EQ16553 131 aa12.48□□□□□ -0.41
HOXD3-201ENST00000249440 USP9YO00507 2555 aaPredicted RBP12.48□□□□□ -0.41
HOXD3-201ENST00000249440 SOCS3O14543 225 aa12.48□□□□□ -0.41
HOXD3-201ENST00000249440 DPM2O94777 84 aa12.48□□□□□ -0.41
HOXD3-201ENST00000249440 J3KRW8 73 aa12.47□□□□□ -0.41
HOXD3-201ENST00000249440 IGHV4-38-2P0DP08 117 aa12.47□□□□□ -0.41
HOXD3-201ENST00000249440 ZFAND2AQ8N6M9 145 aa12.47□□□□□ -0.41
HOXD3-201ENST00000249440 C9orf118A6NHY6 69 aa12.46□□□□□ -0.41
HOXD3-201ENST00000249440 NDUFS8O00217 210 aa12.46□□□□□ -0.41
HOXD3-201ENST00000249440 RBX1P62877 108 aa12.46□□□□□ -0.41
HOXD3-201ENST00000249440 C10orf105Q8TEF2 133 aa12.46□□□□□ -0.41
HOXD3-201ENST00000249440 CCL19Q99731 98 aa12.46□□□□□ -0.41
HOXD3-201ENST00000249440 H3BUX3 64 aa12.46□□□□□ -0.41
HOXD3-201ENST00000249440 IGHV3-11P01762 117 aa12.46□□□□□ -0.41
HOXD3-201ENST00000249440 S100A4P26447 101 aaKnown RBP12.46□□□□□ -0.41
HOXD3-201ENST00000249440 RPL11P62913 178 aaKnown RBP12.46□□□□□ -0.41
HOXD3-201ENST00000249440 CELSR1Q9NYQ6 3014 aa12.46□□□□□ -0.42
HOXD3-201ENST00000249440 IGKV2D-26A0A0A0MRZ7 120 aa12.45□□□□□ -0.42
HOXD3-201ENST00000249440 PF4V1P10720 104 aa12.45□□□□□ -0.42
HOXD3-201ENST00000249440 KIR3DS1Q14943 382 aa12.45□□□□□ -0.42
HOXD3-201ENST00000249440 ZC2HC1BQ5TFG8 222 aa12.45□□□□□ -0.42
HOXD3-201ENST00000249440 HIGD1BQ9P298 99 aa12.45□□□□□ -0.42
HOXD3-201ENST00000249440 A6NDX4 124 aa12.45□□□□□ -0.42
HOXD3-201ENST00000249440 GAGE10A6NGK3 116 aa12.45□□□□□ -0.42
HOXD3-201ENST00000249440 CLEC2AQ6UVW9 174 aa12.45□□□□□ -0.42
HOXD3-201ENST00000249440 SPG11Q96JI7 2443 aa12.45□□□□□ -0.42
HOXD3-201ENST00000249440 GAGE12BA1L429 117 aa12.44□□□□□ -0.42
HOXD3-201ENST00000249440 M0R381 172 aa12.44□□□□□ -0.42
HOXD3-201ENST00000249440 ASIPP42127 132 aa12.44□□□□□ -0.42
HOXD3-201ENST00000249440 KLK15Q9H2R5 256 aa12.44□□□□□ -0.42
HOXD3-201ENST00000249440 CST9LQ9H4G1 147 aa12.44□□□□□ -0.42
HOXD3-201ENST00000249440 A0A0G2JLM5 398 aa12.44□□□□□ -0.42
HOXD3-201ENST00000249440 GTF2H5Q6ZYL4 71 aa12.44□□□□□ -0.42
HOXD3-201ENST00000249440 SMIM2Q9BVW6 85 aa12.44□□□□□ -0.42
HOXD3-201ENST00000249440 TMEM160Q9NX00 188 aa12.44□□□□□ -0.42
HOXD3-201ENST00000249440 PHLDA3Q9Y5J5 127 aa12.44□□□□□ -0.42
HOXD3-201ENST00000249440 POLQO75417 2590 aa12.44□□□□□ -0.42
HOXD3-201ENST00000249440 DOPEY2Q9Y3R5 2298 aa12.43□□□□□ -0.42
HOXD3-201ENST00000249440 CDKN1BP46527 198 aa12.43□□□□□ -0.42
HOXD3-201ENST00000249440 GTSCR1Q86UQ5 136 aa12.43□□□□□ -0.42
HOXD3-201ENST00000249440 DPH3P1Q9H4G8 78 aa12.43□□□□□ -0.42
HOXD3-201ENST00000249440 MRPL35Q9NZE8 188 aaKnown RBP12.43□□□□□ -0.42
HOXD3-201ENST00000249440 A0A087WX48 190 aa12.43□□□□□ -0.42
HOXD3-201ENST00000249440 MED14OSP0DP75 135 aa12.43□□□□□ -0.42
HOXD3-201ENST00000249440 BLCAPP62952 87 aa12.43□□□□□ -0.42
HOXD3-201ENST00000249440 FAM19A4Q96LR4 140 aa12.43□□□□□ -0.42
HOXD3-201ENST00000249440 TRBV7-9A0A0J9YWB2 115 aa12.42□□□□□ -0.42
HOXD3-201ENST00000249440 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.42□□□□□ -0.42
HOXD3-201ENST00000249440 H3BUT2 72 aa12.42□□□□□ -0.42
HOXD3-201ENST00000249440 HLA-DRB4P13762 266 aa12.42□□□□□ -0.42
HOXD3-201ENST00000249440 ANXA2RQ3ZCQ2 193 aa12.42□□□□□ -0.42
HOXD3-201ENST00000249440 ORMDL2Q53FV1 153 aa12.42□□□□□ -0.42
HOXD3-201ENST00000249440 C20orf78Q9BR46 151 aa12.42□□□□□ -0.42
HOXD3-201ENST00000249440 RHPN1-AS1Q9BWJ2 59 aa12.42□□□□□ -0.42
HOXD3-201ENST00000249440 HLA-DRB4X5D2U9 266 aa12.42□□□□□ -0.42
HOXD3-201ENST00000249440 RNASE4P34096 147 aaKnown RBP12.42□□□□□ -0.42
HOXD3-201ENST00000249440 ATP5J2P56134 94 aa12.42□□□□□ -0.42
HOXD3-201ENST00000249440 DEFB1P60022 68 aa12.42□□□□□ -0.42
HOXD3-201ENST00000249440 SUMO2P61956 95 aaKnown RBP12.42□□□□□ -0.42
HOXD3-201ENST00000249440 K7EMI3 77 aa12.41□□□□□ -0.42
HOXD3-201ENST00000249440 IGLV1-40P01703 118 aa12.41□□□□□ -0.42
HOXD3-201ENST00000249440 MSMBP08118 114 aa12.41□□□□□ -0.42
HOXD3-201ENST00000249440 PLNP26678 52 aa12.41□□□□□ -0.42
HOXD3-201ENST00000249440 APRG1Q8IVJ8 170 aa12.41□□□□□ -0.42
HOXD3-201ENST00000249440 TTTY13Q9BZ97 58 aa12.41□□□□□ -0.42
HOXD3-201ENST00000249440 DAZ1Q9NQZ3 744 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms