RNA–Protein interactions for RNA: ENST00000243082.4

HOXC11-201, Transcript of homeobox C11, humanhuman

TSL 3 BASIC

Gene HOXC11, Length 2,039 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-201ENST00000243082 KIR2DL5BA0A0G2JPC4 375 aa13.86□□□□□ -0.19
HOXC11-201ENST00000243082 RNASE4P34096 147 aaKnown RBP13.86□□□□□ -0.19
HOXC11-201ENST00000243082 KIR2DL5AQ8N109 375 aa13.86□□□□□ -0.19
HOXC11-201ENST00000243082 YAE1D1Q9NRH1 226 aa13.86□□□□□ -0.19
HOXC11-201ENST00000243082 SMKR1H3BMG3 65 aa13.85□□□□□ -0.19
HOXC11-201ENST00000243082 ZNF688P0C7X2 276 aa13.85□□□□□ -0.19
HOXC11-201ENST00000243082 CKS2P33552 79 aa13.85□□□□□ -0.19
HOXC11-201ENST00000243082 C4orf3Q8WVX3 66 aa13.85□□□□□ -0.19
HOXC11-201ENST00000243082 IGHV4-4A0A075B6R2 117 aa13.85□□□□□ -0.19
HOXC11-201ENST00000243082 IFI27P40305 119 aaPredicted RBP13.85□□□□□ -0.19
HOXC11-201ENST00000243082 PSMG4Q5JS54 123 aa13.85□□□□□ -0.19
HOXC11-201ENST00000243082 PRSS3P2Q8NHM4 247 aa13.85□□□□□ -0.19
HOXC11-201ENST00000243082 SIGLEC8Q9NYZ4 499 aa13.85□□□□□ -0.19
HOXC11-201ENST00000243082 KLLNB2CW77 178 aa13.84□□□□□ -0.19
HOXC11-201ENST00000243082 LINC01619G3V211 115 aa13.84□□□□□ -0.19
HOXC11-201ENST00000243082 BTF3P20290 206 aaKnown RBP13.84□□□□□ -0.19
HOXC11-201ENST00000243082 LINC00173Q6ZV60 143 aa13.84□□□□□ -0.19
HOXC11-201ENST00000243082 OR11H1Q8NG94 326 aa13.84□□□□□ -0.19
HOXC11-201ENST00000243082 AP5S1Q9NUS5 200 aa13.84□□□□□ -0.19
HOXC11-201ENST00000243082 H3BVH4 76 aa13.83□□□□□ -0.2
HOXC11-201ENST00000243082 NCR2O95944 276 aa13.83□□□□□ -0.2
HOXC11-201ENST00000243082 NPYP01303 97 aa13.83□□□□□ -0.2
HOXC11-201ENST00000243082 SNRPD3P62318 126 aaKnown RBP13.83□□□□□ -0.2
HOXC11-201ENST00000243082 CTAG1AP78358 180 aa13.83□□□□□ -0.2
HOXC11-201ENST00000243082 ANXA2RQ3ZCQ2 193 aa13.83□□□□□ -0.2
HOXC11-201ENST00000243082 ACANP16112 2415 aa13.83□□□□□ -0.2
HOXC11-201ENST00000243082 LOC389332A0A1B0GUA5 103 aa13.83□□□□□ -0.2
HOXC11-201ENST00000243082 LEPROTL1O95214 131 aa13.83□□□□□ -0.2
HOXC11-201ENST00000243082 DEFA6Q01524 100 aa13.83□□□□□ -0.2
HOXC11-201ENST00000243082 FA2HQ7L5A8 372 aa13.83□□□□□ -0.2
HOXC11-201ENST00000243082 VAMP8Q9BV40 100 aa13.83□□□□□ -0.2
HOXC11-201ENST00000243082 GCN1Q92616 2671 aaKnown RBP13.83□□□□□ -0.2
HOXC11-201ENST00000243082 ANK3Q12955 4377 aaKnown RBP13.82□□□□□ -0.2
HOXC11-201ENST00000243082 A0A0J9YX75 114 aa13.82□□□□□ -0.2
HOXC11-201ENST00000243082 GAS8-AS1O95177 125 aa13.82□□□□□ -0.2
HOXC11-201ENST00000243082 EVI2AP22794 236 aa13.82□□□□□ -0.2
HOXC11-201ENST00000243082 CACNG7P62955 275 aa13.82□□□□□ -0.2
HOXC11-201ENST00000243082 HIST2H2BDQ6DRA6 164 aa13.82□□□□□ -0.2
HOXC11-201ENST00000243082 C14orf144Q96I85 54 aa13.82□□□□□ -0.2
HOXC11-201ENST00000243082 DUX3Q96PT4 197 aa13.82□□□□□ -0.2
HOXC11-201ENST00000243082 PAM16Q9Y3D7 125 aa13.82□□□□□ -0.2
HOXC11-201ENST00000243082 CUBNO60494 3623 aa13.82□□□□□ -0.2
HOXC11-201ENST00000243082 PPBPP02775 128 aa13.81□□□□□ -0.2
HOXC11-201ENST00000243082 SPATA12Q7Z6I5 190 aa13.81□□□□□ -0.2
HOXC11-201ENST00000243082 OR1N2Q8NGR9 330 aa13.81□□□□□ -0.2
HOXC11-201ENST00000243082 KHDC1LQ5JSQ8 128 aa13.81□□□□□ -0.2
HOXC11-201ENST00000243082 SPANXN1Q5VSR9 72 aa13.81□□□□□ -0.2
HOXC11-201ENST00000243082 WFDC12Q8WWY7 111 aa13.81□□□□□ -0.2
HOXC11-201ENST00000243082 C20orf144Q9BQM9 153 aa13.81□□□□□ -0.2
HOXC11-201ENST00000243082 TMEM70Q9BUB7 260 aa13.81□□□□□ -0.2
HOXC11-201ENST00000243082 NF1P21359 2839 aa13.8□□□□□ -0.2
HOXC11-201ENST00000243082 CRXO43186 299 aaPredicted RBP13.8□□□□□ -0.2
HOXC11-201ENST00000243082 KLHL30-AS1Q8NEE0 82 aa13.8□□□□□ -0.2
HOXC11-201ENST00000243082 DPF1Q92782 380 aa13.8□□□□□ -0.2
HOXC11-201ENST00000243082 GNRH2O43555 120 aa13.8□□□□□ -0.2
HOXC11-201ENST00000243082 ASIPP42127 132 aa13.8□□□□□ -0.2
HOXC11-201ENST00000243082 ODF3Q96PU9 254 aa13.8□□□□□ -0.2
HOXC11-201ENST00000243082 NDUFAF3Q9BU61 184 aa13.8□□□□□ -0.2
HOXC11-201ENST00000243082 TIMM8BQ9Y5J9 83 aaPredicted RBP13.8□□□□□ -0.2
HOXC11-201ENST00000243082 TCF21O43680 179 aa13.79□□□□□ -0.2
HOXC11-201ENST00000243082 OR9G4Q8NGQ1 327 aa13.79□□□□□ -0.2
HOXC11-201ENST00000243082 DLX4Q92988 240 aaPredicted RBP13.79□□□□□ -0.2
HOXC11-201ENST00000243082 SCRT2Q9NQ03 307 aa13.79□□□□□ -0.2
HOXC11-201ENST00000243082 A0A096LNJ9 63 aa13.78□□□□□ -0.2
HOXC11-201ENST00000243082 S100A4P26447 101 aaKnown RBP13.78□□□□□ -0.2
HOXC11-201ENST00000243082 LAMTOR2Q9Y2Q5 125 aa13.78□□□□□ -0.2
HOXC11-201ENST00000243082 SYS1-DBNDD2H3BUS1 97 aa13.78□□□□□ -0.2
HOXC11-201ENST00000243082 SPRY2O43597 315 aa13.78□□□□□ -0.2
HOXC11-201ENST00000243082 MED14OSP0DP75 135 aa13.78□□□□□ -0.2
HOXC11-201ENST00000243082 GATA1P15976 413 aaPredicted RBP13.78□□□□□ -0.2
HOXC11-201ENST00000243082 SMIM15Q7Z3B0 74 aa13.78□□□□□ -0.2
HOXC11-201ENST00000243082 PEMTQ9UBM1 199 aa13.78□□□□□ -0.2
HOXC11-201ENST00000243082 TNFRSF6BO95407 300 aa13.77□□□□□ -0.21
HOXC11-201ENST00000243082 RNASE3P12724 160 aaKnown RBP13.77□□□□□ -0.21
HOXC11-201ENST00000243082 ATOH7Q8N100 152 aa13.77□□□□□ -0.21
HOXC11-201ENST00000243082 HSPB8Q9UJY1 196 aa13.77□□□□□ -0.21
HOXC11-201ENST00000243082 LEPP41159 167 aa13.76□□□□□ -0.21
HOXC11-201ENST00000243082 FASNP49327 2511 aaKnown RBP13.76□□□□□ -0.21
HOXC11-201ENST00000243082 IGKV3-20P01619 116 aa13.76□□□□□ -0.21
HOXC11-201ENST00000243082 RNASE1P07998 156 aaKnown RBP13.76□□□□□ -0.21
HOXC11-201ENST00000243082 TRAV12-3A0A0B4J271 114 aa13.75□□□□□ -0.21
HOXC11-201ENST00000243082 C7orf71A4D174 169 aa13.75□□□□□ -0.21
HOXC11-201ENST00000243082 M0R381 172 aa13.75□□□□□ -0.21
HOXC11-201ENST00000243082 SPATA45Q537H7 98 aa13.75□□□□□ -0.21
HOXC11-201ENST00000243082 FOXI2Q6ZQN5 318 aa13.75□□□□□ -0.21
HOXC11-201ENST00000243082 ZNF747Q9BV97 191 aa13.75□□□□□ -0.21
HOXC11-201ENST00000243082 MAP1LC3AQ9H492 121 aa13.75□□□□□ -0.21
HOXC11-201ENST00000243082 PHLDA3Q9Y5J5 127 aa13.75□□□□□ -0.21
HOXC11-201ENST00000243082 MAP1LC3CQ9BXW4 147 aa13.74□□□□□ -0.21
HOXC11-201ENST00000243082 SORL1Q92673 2214 aa13.74□□□□□ -0.21
HOXC11-201ENST00000243082 LINC01546A6NGU7 62 aa13.74□□□□□ -0.21
HOXC11-201ENST00000243082 DUSP14O95147 198 aaKnown RBP13.74□□□□□ -0.21
HOXC11-201ENST00000243082 CD28P10747 220 aa13.74□□□□□ -0.21
HOXC11-201ENST00000243082 MAJINQ3KP22 176 aa13.74□□□□□ -0.21
HOXC11-201ENST00000243082 FAM159AQ6UWV7 190 aa13.74□□□□□ -0.21
HOXC11-201ENST00000243082 C11orf44Q8N8P7 122 aa13.74□□□□□ -0.21
HOXC11-201ENST00000243082 RAX2Q96IS3 184 aa13.74□□□□□ -0.21
HOXC11-201ENST00000243082 TRAV26-2A0A0B4J265 109 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 TMEM61Q8N0U2 210 aa13.73□□□□□ -0.21
HOXC11-201ENST00000243082 NRACQ8N912 160 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms