RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 SCRT2Q9NQ03 307 aa10.68□□□□□ -0.7
SF3A1-201ENST00000215793 PCNX2A6NKB5 2137 aa10.68□□□□□ -0.7
SF3A1-201ENST00000215793 ZFHX2Q9C0A1 2572 aaPredicted RBP10.68□□□□□ -0.7
SF3A1-201ENST00000215793 ANGP03950 147 aaKnown RBP10.68□□□□□ -0.7
SF3A1-201ENST00000215793 HLA-DMBP28068 263 aa10.68□□□□□ -0.7
SF3A1-201ENST00000215793 DYNAPQ8N1N2 210 aa10.68□□□□□ -0.7
SF3A1-201ENST00000215793 PLCE1Q9P212 2302 aa10.67□□□□□ -0.7
SF3A1-201ENST00000215793 PRSS29PA6NIE9 313 aa10.67□□□□□ -0.7
SF3A1-201ENST00000215793 K7EP13 123 aa10.67□□□□□ -0.7
SF3A1-201ENST00000215793 C9orf153Q5TBE3 101 aa10.67□□□□□ -0.7
SF3A1-201ENST00000215793 HOXB4P17483 251 aaPredicted RBP10.67□□□□□ -0.7
SF3A1-201ENST00000215793 CENPVL3A0A0U1RRI6 287 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 A0A1W2PPM0 123 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 K7EN84 100 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 EGR2P11161 476 aaPredicted RBP10.66□□□□□ -0.7
SF3A1-201ENST00000215793 C17orf77Q96MU5 243 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 ZNF747Q9BV97 191 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 MED13Q9UHV7 2174 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 CRLF1O75462 422 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 IGFL2Q6UWQ7 119 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 IGF2BP2-AS1Q96M15 143 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 HAMPP81172 84 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 HOXD3P31249 432 aaPredicted RBP10.66□□□□□ -0.7
SF3A1-201ENST00000215793 DEFB112Q30KQ8 113 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 RNF138Q8WVD3 245 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 SPG11Q96JI7 2443 aa10.66□□□□□ -0.7
SF3A1-201ENST00000215793 LHBP01229 141 aa10.65□□□□□ -0.7
SF3A1-201ENST00000215793 SUMO4Q6EEV6 95 aa10.65□□□□□ -0.7
SF3A1-201ENST00000215793 TSSC4Q9Y5U2 329 aaPredicted RBP10.65□□□□□ -0.7
SF3A1-201ENST00000215793 DSCR8Q96T75 97 aa10.65□□□□□ -0.71
SF3A1-201ENST00000215793 DKK2Q9UBU2 259 aa10.65□□□□□ -0.71
SF3A1-201ENST00000215793 TICRRQ7Z2Z1 1910 aa10.64□□□□□ -0.71
SF3A1-201ENST00000215793 F6UB75 175 aa10.64□□□□□ -0.71
SF3A1-201ENST00000215793 IGHV4-59P01825 116 aa10.64□□□□□ -0.71
SF3A1-201ENST00000215793 TRAV25A0A0B4J276 109 aa10.64□□□□□ -0.71
SF3A1-201ENST00000215793 GNRH2O43555 120 aa10.64□□□□□ -0.71
SF3A1-201ENST00000215793 CARD19Q96LW7 228 aa10.64□□□□□ -0.71
SF3A1-201ENST00000215793 FOXE3Q13461 319 aa10.64□□□□□ -0.71
SF3A1-201ENST00000215793 Q6ZSR3 168 aa10.64□□□□□ -0.71
SF3A1-201ENST00000215793 U3KQE9 123 aa10.64□□□□□ -0.71
SF3A1-201ENST00000215793 RNF152Q8N8N0 203 aa10.63□□□□□ -0.71
SF3A1-201ENST00000215793 NPBQ8NG41 125 aa10.63□□□□□ -0.71
SF3A1-201ENST00000215793 CFHR4Q92496 578 aa10.63□□□□□ -0.71
SF3A1-201ENST00000215793 MUC6Q6W4X9 2439 aa10.63□□□□□ -0.71
SF3A1-201ENST00000215793 NOP10Q9NPE3 64 aaKnown RBP10.62□□□□□ -0.71
SF3A1-201ENST00000215793 CCL24O00175 119 aa10.62□□□□□ -0.71
SF3A1-201ENST00000215793 IGF2-ASQ6U949 168 aa10.62□□□□□ -0.71
SF3A1-201ENST00000215793 C12orf74Q32Q52 190 aa10.62□□□□□ -0.71
SF3A1-201ENST00000215793 COA6Q5JTJ3 125 aaKnown RBP10.62□□□□□ -0.71
SF3A1-201ENST00000215793 IGHV7-81A0A0B4J1V7 117 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 H3BMG7 143 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 I3L2K1 104 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 IGKV1-17P01599 117 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 CACNA1AO00555 2505 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 A0A096LPF7 62 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 K7EIM0 57 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 CFC1BP0CG36 223 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 CFC1P0CG37 223 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 HERV-K104P63124 156 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 GP9P14770 177 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 KRTAP27-1Q3LI81 207 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 ASPHD1Q5U4P2 390 aa10.61□□□□□ -0.71
SF3A1-201ENST00000215793 HELZP42694 1942 aaKnown RBP10.6□□□□□ -0.71
SF3A1-201ENST00000215793 IGLV11-55A0A075B6I3 123 aa10.6□□□□□ -0.71
SF3A1-201ENST00000215793 GRNP28799 593 aaKnown RBP10.6□□□□□ -0.71
SF3A1-201ENST00000215793 RNASE13Q5GAN3 156 aaKnown RBP10.6□□□□□ -0.71
SF3A1-201ENST00000215793 SLC25A29Q8N8R3 303 aa10.6□□□□□ -0.71
SF3A1-201ENST00000215793 FGF23Q9GZV9 251 aaPredicted RBP10.6□□□□□ -0.71
SF3A1-201ENST00000215793 NPSP0C0P6 89 aa10.6□□□□□ -0.71
SF3A1-201ENST00000215793 PRSS33Q8NF86 280 aa10.6□□□□□ -0.71
SF3A1-201ENST00000215793 CGB3P0DN86 165 aa10.6□□□□□ -0.71
SF3A1-201ENST00000215793 EML6Q6ZMW3 1958 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 WT1P19544 449 aaPredicted RBP10.59□□□□□ -0.71
SF3A1-201ENST00000215793 ZMAT4Q9H898 229 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 IGHV4-61A0A0C4DH41 118 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 XCL1P47992 114 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 Q9H8V8 135 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 DKK4Q9UBT3 224 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 PLXNA2O75051 1894 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 IGHG4P01861 327 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 IGFBPL1Q8WX77 278 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 WNK1Q9H4A3 2382 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 K7ERJ3 54 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 LINC01545Q5VT33 79 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 WDR81Q562E7 1941 aa10.59□□□□□ -0.71
SF3A1-201ENST00000215793 CTSGP08311 255 aa10.58□□□□□ -0.72
SF3A1-201ENST00000215793 Q71RC1 249 aaPredicted RBP10.58□□□□□ -0.72
SF3A1-201ENST00000215793 TSC2P49815 1807 aa10.58□□□□□ -0.72
SF3A1-201ENST00000215793 IFITM1P13164 125 aa10.58□□□□□ -0.72
SF3A1-201ENST00000215793 TNCP24821 2201 aa10.58□□□□□ -0.72
SF3A1-201ENST00000215793 CGB7P0DN87 165 aa10.58□□□□□ -0.72
SF3A1-201ENST00000215793 CLPSL2Q6UWE3 100 aa10.58□□□□□ -0.72
SF3A1-201ENST00000215793 AMTNQ6UX39 209 aa10.58□□□□□ -0.72
SF3A1-201ENST00000215793 AJUBAQ96IF1 538 aa10.58□□□□□ -0.72
SF3A1-201ENST00000215793 DYSFO75923 2080 aa10.57□□□□□ -0.72
SF3A1-201ENST00000215793 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.57□□□□□ -0.72
SF3A1-201ENST00000215793 IGKV2-29A2NJV5 120 aaPredicted RBP10.57□□□□□ -0.72
SF3A1-201ENST00000215793 GAGE12HA6NDE8 117 aa10.57□□□□□ -0.72
SF3A1-201ENST00000215793 PRSS47A8MTI9 375 aa10.57□□□□□ -0.72
SF3A1-201ENST00000215793 BUB3O43684 328 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms