RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 TMEM95Q3KNT9 176 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 SFTA2Q6UW10 78 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 AMTNQ6UX39 209 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 PRSS1P07477 247 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 PIFOQ8TCI5 191 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 RNF5Q99942 180 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 VPS25Q9BRG1 176 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 RAB1BQ9H0U4 201 aa8.14□□□□□ -1.11
USP28-201ENST00000003302 A0A0G2JLM5 398 aa8.13□□□□□ -1.11
USP28-201ENST00000003302 LY6EQ16553 131 aa8.13□□□□□ -1.11
USP28-201ENST00000003302 NBL1P41271 181 aa8.13□□□□□ -1.11
USP28-201ENST00000003302 M0R381 172 aa8.13□□□□□ -1.11
USP28-201ENST00000003302 NRGNQ92686 78 aa8.13□□□□□ -1.11
USP28-201ENST00000003302 TRBV25-1A0A075B6N4 114 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 A1L4Q6 167 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 FABP5P3A8MUU1 101 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 GNRH2O43555 120 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 LMO4P61968 165 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 BLCAPP62952 87 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 GAGE10A6NGK3 116 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 COX8CQ7Z4L0 72 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 USP24Q9UPU5 2620 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 VWFP04275 2813 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 CEACAM3P40198 252 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 EBI3Q14213 229 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 CENPVL3A0A0U1RRI6 287 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 SMIM17P0DL12 118 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 CNFNQ9BYD5 112 aa8.12□□□□□ -1.11
USP28-201ENST00000003302 RNF223E7ERA6 249 aa8.11□□□□□ -1.11
USP28-201ENST00000003302 M0R1W7 72 aa8.11□□□□□ -1.11
USP28-201ENST00000003302 PRM2P04554 102 aa8.11□□□□□ -1.11
USP28-201ENST00000003302 SAPCD1Q5SSQ6 148 aa8.11□□□□□ -1.11
USP28-201ENST00000003302 C9orf118A6NHY6 69 aa8.11□□□□□ -1.11
USP28-201ENST00000003302 IGHV4-38-2P0DP08 117 aa8.11□□□□□ -1.11
USP28-201ENST00000003302 C14orf178Q8N769 122 aaPredicted RBP8.11□□□□□ -1.11
USP28-201ENST00000003302 FBXL19-AS1Q494R0 122 aa8.11□□□□□ -1.11
USP28-201ENST00000003302 PHLDA1Q8WV24 401 aaPredicted RBP8.11□□□□□ -1.11
USP28-201ENST00000003302 SRSF8Q9BRL6 282 aaKnown RBP8.11□□□□□ -1.11
USP28-201ENST00000003302 NHP2Q9NX24 153 aaKnown RBP8.11□□□□□ -1.11
USP28-201ENST00000003302 LINC01559Q495D7 138 aa8.1□□□□□ -1.11
USP28-201ENST00000003302 Q6AWC8 147 aa8.1□□□□□ -1.11
USP28-201ENST00000003302 TIMD4Q96H15 378 aa8.1□□□□□ -1.11
USP28-201ENST00000003302 PEF1Q9UBV8 284 aaKnown RBP8.1□□□□□ -1.11
USP28-201ENST00000003302 ZMAT4Q9H898 229 aa8.1□□□□□ -1.11
USP28-201ENST00000003302 INSL3P51460 131 aa8.1□□□□□ -1.11
USP28-201ENST00000003302 ZNF48Q96MX3 618 aaPredicted RBP8.1□□□□□ -1.11
USP28-201ENST00000003302 MAP1LC3AQ9H492 121 aa8.1□□□□□ -1.11
USP28-201ENST00000003302 C5orf56Q8N8D9 126 aa8.09□□□□□ -1.11
USP28-201ENST00000003302 ITPR2Q14571 2701 aa8.09□□□□□ -1.11
USP28-201ENST00000003302 CHAC1Q9BUX1 264 aa8.09□□□□□ -1.11
USP28-201ENST00000003302 FCER1GP30273 86 aa8.09□□□□□ -1.11
USP28-201ENST00000003302 ZFAND2AQ8N6M9 145 aa8.09□□□□□ -1.11
USP28-201ENST00000003302 FAM110DQ8TAY7 271 aaPredicted RBP8.09□□□□□ -1.11
USP28-201ENST00000003302 ITPR3Q14573 2671 aa8.08□□□□□ -1.12
USP28-201ENST00000003302 AVPP01185 164 aa8.08□□□□□ -1.12
USP28-201ENST00000003302 KLHL30-AS1Q8NEE0 82 aa8.08□□□□□ -1.12
USP28-201ENST00000003302 RASL10AQ92737 203 aa8.08□□□□□ -1.12
USP28-201ENST00000003302 TENM4Q6N022 2769 aa8.08□□□□□ -1.12
USP28-201ENST00000003302 A0A1W2PPM0 123 aa8.08□□□□□ -1.12
USP28-201ENST00000003302 SH2D6Q7Z4S9 175 aa8.08□□□□□ -1.12
USP28-201ENST00000003302 MAPK1IP1LQ8NDC0 245 aa8.08□□□□□ -1.12
USP28-201ENST00000003302 TEX48A0A1B0GUV7 120 aa8.08□□□□□ -1.12
USP28-201ENST00000003302 BMI1P35226 326 aa8.08□□□□□ -1.12
USP28-201ENST00000003302 SPANXN1Q5VSR9 72 aa8.08□□□□□ -1.12
USP28-201ENST00000003302 SPCS1Q9Y6A9 102 aa8.08□□□□□ -1.12
USP28-201ENST00000003302 FN1P02751 2386 aaKnown RBP8.07□□□□□ -1.12
USP28-201ENST00000003302 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.07□□□□□ -1.12
USP28-201ENST00000003302 IGKCP01834 107 aa8.07□□□□□ -1.12
USP28-201ENST00000003302 PPBPP02775 128 aa8.07□□□□□ -1.12
USP28-201ENST00000003302 RPL11P62913 178 aaKnown RBP8.07□□□□□ -1.12
USP28-201ENST00000003302 WFDC2Q14508 124 aa8.07□□□□□ -1.12
USP28-201ENST00000003302 FLNAP21333 2647 aaKnown RBP8.07□□□□□ -1.12
USP28-201ENST00000003302 IGHV4-61A0A0C4DH41 118 aa8.07□□□□□ -1.12
USP28-201ENST00000003302 A0A1B0GW15 77 aa8.07□□□□□ -1.12
USP28-201ENST00000003302 H3BRM9 83 aa8.07□□□□□ -1.12
USP28-201ENST00000003302 K7EP34 96 aa8.07□□□□□ -1.12
USP28-201ENST00000003302 IGKV3-20P01619 116 aa8.07□□□□□ -1.12
USP28-201ENST00000003302 GCN1Q92616 2671 aaKnown RBP8.07□□□□□ -1.12
USP28-201ENST00000003302 ANXA2RQ3ZCQ2 193 aa8.07□□□□□ -1.12
USP28-201ENST00000003302 C16orf92Q96LL3 132 aa8.07□□□□□ -1.12
USP28-201ENST00000003302 H3BMG7 143 aa8.06□□□□□ -1.12
USP28-201ENST00000003302 IGHV4-39P01824 125 aa8.06□□□□□ -1.12
USP28-201ENST00000003302 HSD52Q0P140 79 aa8.06□□□□□ -1.12
USP28-201ENST00000003302 Q9UF83 564 aa8.06□□□□□ -1.12
USP28-201ENST00000003302 NPFFO15130 113 aa8.06□□□□□ -1.12
USP28-201ENST00000003302 RPL39P62891 51 aaKnown RBP8.06□□□□□ -1.12
USP28-201ENST00000003302 SEC11AP67812 179 aa8.06□□□□□ -1.12
USP28-201ENST00000003302 PLEKHB2Q96CS7 222 aa8.06□□□□□ -1.12
USP28-201ENST00000003302 UBE2E1P51965 193 aa8.06□□□□□ -1.12
USP28-201ENST00000003302 TMEM78Q5T7P6 136 aa8.06□□□□□ -1.12
USP28-201ENST00000003302 OR1N2Q8NGR9 330 aa8.06□□□□□ -1.12
USP28-201ENST00000003302 OPRPNQ99935 248 aaPredicted RBP8.06□□□□□ -1.12
USP28-201ENST00000003302 LINC00477Q96M19 166 aa8.06□□□□□ -1.12
USP28-201ENST00000003302 A0A087WWL8 130 aa8.05□□□□□ -1.12
USP28-201ENST00000003302 RNASE3P12724 160 aaKnown RBP8.05□□□□□ -1.12
USP28-201ENST00000003302 CCDC144NLQ6NUI1 221 aa8.05□□□□□ -1.12
USP28-201ENST00000003302 NPFFR1Q9GZQ6 430 aa8.05□□□□□ -1.12
USP28-201ENST00000003302 RNASE4P34096 147 aaKnown RBP8.05□□□□□ -1.12
USP28-201ENST00000003302 SAMD5Q5TGI4 173 aa8.05□□□□□ -1.12
USP28-201ENST00000003302 DPF1Q92782 380 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms