RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	IGLV2-11	P01706	119 aa		18.94	■□□□□ 0.62
VEGFA-231	ENST00000640499	TPT1	P13693	172 aa	Known RBP	18.94	■□□□□ 0.62
VEGFA-231	ENST00000640499	UBE2G2	P60604	165 aa		18.94	■□□□□ 0.62
VEGFA-231	ENST00000640499	DEFB131B	A0A096LNP1	70 aa		18.93	■□□□□ 0.62
VEGFA-231	ENST00000640499	FAM74A7	A6NL05	159 aa		18.93	■□□□□ 0.62
VEGFA-231	ENST00000640499	LYRM9	A8MSI8	78 aa		18.93	■□□□□ 0.62
VEGFA-231	ENST00000640499	UMAD1	C9J7I0	102 aa		18.93	■□□□□ 0.62
VEGFA-231	ENST00000640499	EIF5A	P63241	154 aa	Known RBP	18.93	■□□□□ 0.62
VEGFA-231	ENST00000640499	C9orf62	Q8N4C0	152 aa		18.93	■□□□□ 0.62
VEGFA-231	ENST00000640499	FAM213B	Q8TBF2	198 aa		18.93	■□□□□ 0.62
VEGFA-231	ENST00000640499	TEX48	A0A1B0GUV7	120 aa		18.92	■□□□□ 0.62
VEGFA-231	ENST00000640499	C11orf72	Q8NBR9	251 aa		18.92	■□□□□ 0.62
VEGFA-231	ENST00000640499	TP53TG3	Q9ULZ0	132 aa		18.92	■□□□□ 0.62
VEGFA-231	ENST00000640499	APLN	Q9ULZ1	77 aa		18.92	■□□□□ 0.62
VEGFA-231	ENST00000640499	IGLL5	B9A064	214 aa		18.91	■□□□□ 0.62
VEGFA-231	ENST00000640499	NOP10	Q9NPE3	64 aa	Known RBP	18.91	■□□□□ 0.62
VEGFA-231	ENST00000640499	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	18.91	■□□□□ 0.62
VEGFA-231	ENST00000640499		Q6AWC8	147 aa		18.9	■□□□□ 0.62
VEGFA-231	ENST00000640499	CCDC28A	Q8IWP9	274 aa		18.9	■□□□□ 0.62
VEGFA-231	ENST00000640499	LINC00479	Q96M42	142 aa		18.9	■□□□□ 0.62
VEGFA-231	ENST00000640499	SERTM2	A0A1B0GWG4	89 aa		18.89	■□□□□ 0.61
VEGFA-231	ENST00000640499	DAD1	P61803	113 aa		18.89	■□□□□ 0.61
VEGFA-231	ENST00000640499	ANXA2R	Q3ZCQ2	193 aa		18.89	■□□□□ 0.61
VEGFA-231	ENST00000640499	DPPA3	Q6W0C5	159 aa		18.89	■□□□□ 0.61
VEGFA-231	ENST00000640499	EIF4E3	Q8N5X7	224 aa	Known RBP	18.89	■□□□□ 0.61
VEGFA-231	ENST00000640499	LINC00612	Q8N6U2	182 aa		18.89	■□□□□ 0.61
VEGFA-231	ENST00000640499	SFT2D1	Q8WV19	159 aa		18.89	■□□□□ 0.61
VEGFA-231	ENST00000640499	LINC00476	Q8WZB0	136 aa		18.89	■□□□□ 0.61
VEGFA-231	ENST00000640499	DEFB130B	P0DP73	79 aa		18.88	■□□□□ 0.61
VEGFA-231	ENST00000640499	DEFB130A	P0DP74	79 aa		18.88	■□□□□ 0.61
VEGFA-231	ENST00000640499	PSG8	Q9UQ74	426 aa		18.88	■□□□□ 0.61
VEGFA-231	ENST00000640499	IGHV4-4	A0A075B6R2	117 aa		18.87	■□□□□ 0.61
VEGFA-231	ENST00000640499	CYB561D1	Q8N8Q1	229 aa		18.87	■□□□□ 0.61
VEGFA-231	ENST00000640499	ATG101	Q9BSB4	218 aa		18.87	■□□□□ 0.61
VEGFA-231	ENST00000640499	TREM1	Q9NP99	234 aa		18.87	■□□□□ 0.61
VEGFA-231	ENST00000640499	GSN-AS1	Q9NRJ2	163 aa		18.87	■□□□□ 0.61
VEGFA-231	ENST00000640499	IGHV1OR15-1	A0A075B7D0	117 aa		18.86	■□□□□ 0.61
VEGFA-231	ENST00000640499		A0A1B0GV50	99 aa		18.86	■□□□□ 0.61
VEGFA-231	ENST00000640499	CBY3	A6NI87	242 aa		18.86	■□□□□ 0.61
VEGFA-231	ENST00000640499		F6UZH7	168 aa		18.86	■□□□□ 0.61
VEGFA-231	ENST00000640499	SLC51B	Q86UW2	128 aa		18.86	■□□□□ 0.61
VEGFA-231	ENST00000640499	C8orf49	Q96NF6	230 aa		18.86	■□□□□ 0.61
VEGFA-231	ENST00000640499	TRAV34	A0A0B4J273	112 aa		18.85	■□□□□ 0.61
VEGFA-231	ENST00000640499	RGS13	O14921	159 aa		18.85	■□□□□ 0.61
VEGFA-231	ENST00000640499	ZNF80	P51504	273 aa	Predicted RBP	18.85	■□□□□ 0.61
VEGFA-231	ENST00000640499	DAZ2	Q13117	558 aa	Known RBP	18.85	■□□□□ 0.61
VEGFA-231	ENST00000640499	ZFP69	Q49AA0	526 aa		18.85	■□□□□ 0.61
VEGFA-231	ENST00000640499	MUC21	Q5SSG8	566 aa		18.85	■□□□□ 0.61
VEGFA-231	ENST00000640499	TMEM75	Q8N9X5	138 aa		18.85	■□□□□ 0.61
VEGFA-231	ENST00000640499	KLF12	Q9Y4X4	402 aa		18.85	■□□□□ 0.61
VEGFA-231	ENST00000640499	H2AFB1	P0C5Y9	115 aa		18.84	■□□□□ 0.61
VEGFA-231	ENST00000640499	CCL20	P78556	96 aa		18.84	■□□□□ 0.61
VEGFA-231	ENST00000640499	FLI1	Q01543	452 aa	Predicted RBP	18.84	■□□□□ 0.61
VEGFA-231	ENST00000640499	NKX6-2	Q9C056	277 aa	Predicted RBP	18.84	■□□□□ 0.61
VEGFA-231	ENST00000640499	PEX7	O00628	323 aa		18.83	■□□□□ 0.6
VEGFA-231	ENST00000640499	PAGE4	O60829	102 aa		18.83	■□□□□ 0.6
VEGFA-231	ENST00000640499	IFNA7	P01567	189 aa		18.83	■□□□□ 0.6
VEGFA-231	ENST00000640499	HTN3	P15516	51 aa		18.83	■□□□□ 0.6
VEGFA-231	ENST00000640499	ATP5G3	P48201	142 aa		18.83	■□□□□ 0.6
VEGFA-231	ENST00000640499	SULT1A2	P50226	295 aa		18.83	■□□□□ 0.6
VEGFA-231	ENST00000640499	TCTA	P57738	103 aa		18.83	■□□□□ 0.6
VEGFA-231	ENST00000640499		K7EQM0	130 aa		18.82	■□□□□ 0.6
VEGFA-231	ENST00000640499	NKX2-5	P52952	324 aa	Predicted RBP	18.82	■□□□□ 0.6
VEGFA-231	ENST00000640499	PRNT	Q86SH4	94 aa		18.82	■□□□□ 0.6
VEGFA-231	ENST00000640499	ZNF680	Q8NEM1	530 aa		18.82	■□□□□ 0.6
VEGFA-231	ENST00000640499	SNURFL	B1AK76	121 aa		18.81	■□□□□ 0.6
VEGFA-231	ENST00000640499	TCL1A	P56279	114 aa		18.81	■□□□□ 0.6
VEGFA-231	ENST00000640499		Q6ZTI0	123 aa		18.81	■□□□□ 0.6
VEGFA-231	ENST00000640499	MDFIC	Q9P1T7	246 aa		18.81	■□□□□ 0.6
VEGFA-231	ENST00000640499	ARL2-SNX15	V9GYD0	113 aa		18.81	■□□□□ 0.6
VEGFA-231	ENST00000640499	LY6G6C	O95867	125 aa		18.8	■□□□□ 0.6
VEGFA-231	ENST00000640499	RAB5C	P51148	216 aa		18.8	■□□□□ 0.6
VEGFA-231	ENST00000640499	TDRG1	Q3Y452	100 aa		18.8	■□□□□ 0.6
VEGFA-231	ENST00000640499	IBA57	Q5T440	356 aa	Known RBP	18.8	■□□□□ 0.6
VEGFA-231	ENST00000640499	CST9LP1	Q5W188	147 aa		18.8	■□□□□ 0.6
VEGFA-231	ENST00000640499	EIF5AL1	Q6IS14	154 aa	Known RBP	18.8	■□□□□ 0.6
VEGFA-231	ENST00000640499	HIST1H2BA	Q96A08	127 aa		18.8	■□□□□ 0.6
VEGFA-231	ENST00000640499	C11orf21	Q9P2W6	132 aa		18.8	■□□□□ 0.6
VEGFA-231	ENST00000640499	KMT2A	Q03164	3969 aa		18.8	■□□□□ 0.6
VEGFA-231	ENST00000640499	TRAV1-1	A0A0B4J248	108 aa		18.79	■□□□□ 0.6
VEGFA-231	ENST00000640499	GAGE12B	A1L429	117 aa		18.79	■□□□□ 0.6
VEGFA-231	ENST00000640499	GAGE7	O76087	117 aa		18.79	■□□□□ 0.6
VEGFA-231	ENST00000640499	GAGE12F	P0CL80	117 aa		18.79	■□□□□ 0.6
VEGFA-231	ENST00000640499	GAGE12G	P0CL81	117 aa		18.79	■□□□□ 0.6
VEGFA-231	ENST00000640499	GAGE12I	P0CL82	117 aa		18.79	■□□□□ 0.6
VEGFA-231	ENST00000640499	TRAV21	A0A0B4J279	112 aa		18.78	■□□□□ 0.6
VEGFA-231	ENST00000640499	SPINK4	O60575	86 aa		18.78	■□□□□ 0.6
VEGFA-231	ENST00000640499	LGALS9C	Q6DKI2	356 aa		18.78	■□□□□ 0.6
VEGFA-231	ENST00000640499	BOLA1	Q9Y3E2	137 aa		18.78	■□□□□ 0.6
VEGFA-231	ENST00000640499	FBLL1	A6NHQ2	334 aa	Known RBP	18.77	■□□□□ 0.6
VEGFA-231	ENST00000640499	GNRH2	O43555	120 aa		18.77	■□□□□ 0.6
VEGFA-231	ENST00000640499	TMEM88	Q6PEY1	159 aa		18.77	■□□□□ 0.6
VEGFA-231	ENST00000640499		Q86TA4	180 aa		18.77	■□□□□ 0.6
VEGFA-231	ENST00000640499	NDFIP1	Q9BT67	221 aa		18.77	■□□□□ 0.6
VEGFA-231	ENST00000640499	DNAH6	Q9C0G6	4158 aa		18.77	■□□□□ 0.6
VEGFA-231	ENST00000640499	GCG	P01275	180 aa		18.76	■□□□□ 0.59
VEGFA-231	ENST00000640499	ATP5G1	P05496	136 aa		18.76	■□□□□ 0.59
VEGFA-231	ENST00000640499	TMEM183B	Q1AE95	376 aa		18.76	■□□□□ 0.59
VEGFA-231	ENST00000640499	FAM159A	Q6UWV7	190 aa		18.76	■□□□□ 0.59
VEGFA-231	ENST00000640499	TMEM183A	Q8IXX5	376 aa		18.76	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 133.8 ms