RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TEX46H3BTG2 121 aa13.65□□□□□ -0.22
CLN3-260ENST00000637578 PAGE4O60829 102 aa13.65□□□□□ -0.22
CLN3-260ENST00000637578 KIR3DS1Q14943 382 aa13.65□□□□□ -0.22
CLN3-260ENST00000637578 LINC00477Q96M19 166 aa13.65□□□□□ -0.22
CLN3-260ENST00000637578 NDUFAF3Q9BU61 184 aa13.65□□□□□ -0.22
CLN3-260ENST00000637578 ARL2-SNX15V9GYD0 113 aa13.65□□□□□ -0.22
CLN3-260ENST00000637578 TCRAP04437 139 aa13.64□□□□□ -0.23
CLN3-260ENST00000637578 TMEM78Q5T7P6 136 aa13.64□□□□□ -0.23
CLN3-260ENST00000637578 CST9LP1Q5W188 147 aa13.64□□□□□ -0.23
CLN3-260ENST00000637578 TEX261Q6UWH6 196 aa13.64□□□□□ -0.23
CLN3-260ENST00000637578 Q8TAT8 98 aa13.64□□□□□ -0.23
CLN3-260ENST00000637578 NKX6-2Q9C056 277 aaPredicted RBP13.64□□□□□ -0.23
CLN3-260ENST00000637578 EPDR1Q9UM22 224 aa13.64□□□□□ -0.23
CLN3-260ENST00000637578 IFNA7P01567 189 aa13.63□□□□□ -0.23
CLN3-260ENST00000637578 ATP5G3P48201 142 aa13.63□□□□□ -0.23
CLN3-260ENST00000637578 PPT1P50897 306 aa13.63□□□□□ -0.23
CLN3-260ENST00000637578 BLOC1S1P78537 153 aa13.63□□□□□ -0.23
CLN3-260ENST00000637578 ZNF492Q9P255 531 aa13.63□□□□□ -0.23
CLN3-260ENST00000637578 GNG13Q9P2W3 67 aa13.63□□□□□ -0.23
CLN3-260ENST00000637578 TRAV8-1A0A0A6YYK1 113 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 H7BYZ3 331 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 ZNF138P52744 262 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 DAD1P61803 113 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 CCDC28AQ8IWP9 274 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 ZNF680Q8NEM1 530 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 LEPP41159 167 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 GFI1BQ5VTD9 330 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 ZNF493Q6ZR52 646 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 C16orf74Q96GX8 76 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 FAM19A4Q96LR4 140 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 ATG101Q9BSB4 218 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 MANBALQ9NQG1 85 aa13.62□□□□□ -0.23
CLN3-260ENST00000637578 SERTM2A0A1B0GWG4 89 aa13.61□□□□□ -0.23
CLN3-260ENST00000637578 J3KRW8 73 aa13.61□□□□□ -0.23
CLN3-260ENST00000637578 CYB561D1Q8N8Q1 229 aa13.61□□□□□ -0.23
CLN3-260ENST00000637578 RNASE8Q8TDE3 154 aaKnown RBP13.61□□□□□ -0.23
CLN3-260ENST00000637578 SGK494Q96LW2 274 aa13.61□□□□□ -0.23
CLN3-260ENST00000637578 PEX7O00628 323 aa13.6□□□□□ -0.23
CLN3-260ENST00000637578 TMEM263Q8WUH6 116 aaKnown RBP13.6□□□□□ -0.23
CLN3-260ENST00000637578 FRAS1Q86XX4 4008 aa13.59□□□□□ -0.23
CLN3-260ENST00000637578 P0DMU3 169 aa13.59□□□□□ -0.23
CLN3-260ENST00000637578 FAM231AP0DMU4 169 aa13.59□□□□□ -0.23
CLN3-260ENST00000637578 FAM231CP0DMU5 169 aa13.59□□□□□ -0.23
CLN3-260ENST00000637578 ZFAND2AQ8N6M9 145 aa13.59□□□□□ -0.23
CLN3-260ENST00000637578 LYPD6BQ8NI32 183 aa13.59□□□□□ -0.23
CLN3-260ENST00000637578 HIST1H2BAQ96A08 127 aa13.59□□□□□ -0.23
CLN3-260ENST00000637578 KLLNB2CW77 178 aa13.58□□□□□ -0.23
CLN3-260ENST00000637578 K7EQM0 130 aa13.58□□□□□ -0.23
CLN3-260ENST00000637578 IGLV2-11P01706 119 aa13.58□□□□□ -0.23
CLN3-260ENST00000637578 HTN1P15515 57 aa13.58□□□□□ -0.23
CLN3-260ENST00000637578 CRISP2P16562 243 aa13.58□□□□□ -0.23
CLN3-260ENST00000637578 POM121L12Q8N7R1 296 aa13.58□□□□□ -0.23
CLN3-260ENST00000637578 LINC00479Q96M42 142 aa13.58□□□□□ -0.23
CLN3-260ENST00000637578 TCEAL7Q9BRU2 100 aa13.58□□□□□ -0.23
CLN3-260ENST00000637578 TIMM8BQ9Y5J9 83 aaPredicted RBP13.58□□□□□ -0.23
CLN3-260ENST00000637578 DNAH10Q8IVF4 4471 aa13.58□□□□□ -0.24
CLN3-260ENST00000637578 TRAV34A0A0B4J273 112 aa13.58□□□□□ -0.24
CLN3-260ENST00000637578 HTN3P15516 51 aa13.58□□□□□ -0.24
CLN3-260ENST00000637578 PRR9Q5T870 116 aa13.58□□□□□ -0.24
CLN3-260ENST00000637578 PCNPQ8WW12 178 aaKnown RBP13.58□□□□□ -0.24
CLN3-260ENST00000637578 TRBV7-9A0A0J9YWB2 115 aa13.57□□□□□ -0.24
CLN3-260ENST00000637578 IFNA1P01562 189 aa13.57□□□□□ -0.24
CLN3-260ENST00000637578 DEFB130BP0DP73 79 aa13.57□□□□□ -0.24
CLN3-260ENST00000637578 DEFB130AP0DP74 79 aa13.57□□□□□ -0.24
CLN3-260ENST00000637578 BCL2P10415 239 aa13.57□□□□□ -0.24
CLN3-260ENST00000637578 TMEM75Q8N9X5 138 aa13.57□□□□□ -0.24
CLN3-260ENST00000637578 TVP23CQ96ET8 276 aa13.57□□□□□ -0.24
CLN3-260ENST00000637578 PSG8Q9UQ74 426 aa13.57□□□□□ -0.24
CLN3-260ENST00000637578 LENEPQ9Y5L5 61 aa13.57□□□□□ -0.24
CLN3-260ENST00000637578 SCO2A0A1W2PP80 73 aa13.56□□□□□ -0.24
CLN3-260ENST00000637578 CBY3A6NI87 242 aa13.56□□□□□ -0.24
CLN3-260ENST00000637578 F6UZH7 168 aa13.56□□□□□ -0.24
CLN3-260ENST00000637578 NMBP08949 121 aa13.56□□□□□ -0.24
CLN3-260ENST00000637578 FLI1Q01543 452 aaPredicted RBP13.56□□□□□ -0.24
CLN3-260ENST00000637578 BTN1A1Q13410 526 aa13.56□□□□□ -0.24
CLN3-260ENST00000637578 TMEM88Q6PEY1 159 aa13.56□□□□□ -0.24
CLN3-260ENST00000637578 TRAV12-3A0A0B4J271 114 aa13.55□□□□□ -0.24
CLN3-260ENST00000637578 C7orf71A4D174 169 aa13.55□□□□□ -0.24
CLN3-260ENST00000637578 ZNF324O75467 553 aaPredicted RBP13.55□□□□□ -0.24
CLN3-260ENST00000637578 GPX1P07203 203 aa13.55□□□□□ -0.24
CLN3-260ENST00000637578 RNASE4P34096 147 aaKnown RBP13.55□□□□□ -0.24
CLN3-260ENST00000637578 PRNTQ86SH4 94 aa13.55□□□□□ -0.24
CLN3-260ENST00000637578 LINC00612Q8N6U2 182 aa13.55□□□□□ -0.24
CLN3-260ENST00000637578 PYGO2Q9BRQ0 406 aa13.55□□□□□ -0.24
CLN3-260ENST00000637578 NOP10Q9NPE3 64 aaKnown RBP13.55□□□□□ -0.24
CLN3-260ENST00000637578 MEF2BQ02080 365 aaPredicted RBP13.54□□□□□ -0.24
CLN3-260ENST00000637578 LINC00467Q9BRT7 94 aa13.54□□□□□ -0.24
CLN3-260ENST00000637578 FBLL1A6NHQ2 334 aaKnown RBP13.54□□□□□ -0.24
CLN3-260ENST00000637578 AKR1C3P42330 323 aa13.54□□□□□ -0.24
CLN3-260ENST00000637578 TXNDC17Q9BRA2 123 aa13.54□□□□□ -0.24
CLN3-260ENST00000637578 TREM1Q9NP99 234 aa13.54□□□□□ -0.24
CLN3-260ENST00000637578 VAX2Q9UIW0 290 aa13.54□□□□□ -0.24
CLN3-260ENST00000637578 KLF12Q9Y4X4 402 aa13.54□□□□□ -0.24
CLN3-260ENST00000637578 ATP5G1P05496 136 aa13.53□□□□□ -0.24
CLN3-260ENST00000637578 TAGLN2P37802 199 aaKnown RBP13.53□□□□□ -0.24
CLN3-260ENST00000637578 Q6ZQT7 251 aa13.53□□□□□ -0.24
CLN3-260ENST00000637578 Q86TA4 180 aa13.53□□□□□ -0.24
CLN3-260ENST00000637578 C15orf53Q8NAA6 179 aa13.53□□□□□ -0.24
CLN3-260ENST00000637578 FMC1Q96HJ9 113 aa13.53□□□□□ -0.24
CLN3-260ENST00000637578 NDFIP1Q9BT67 221 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms