RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SLC51BQ86UW2 128 aa9.52□□□□□ -0.89
CLN3-249ENST00000636685 TP53TG3Q9ULZ0 132 aa9.52□□□□□ -0.89
CLN3-249ENST00000636685 KCNIP3Q9Y2W7 256 aa9.52□□□□□ -0.89
CLN3-249ENST00000636685 C7orf71A4D174 169 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 C5orf51A6NDU8 294 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 PRSS46E5RG02 174 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 H3BTX0 84 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 ARPC5O15511 151 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 AKR1C1Q04828 323 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 LCN15Q6UWW0 184 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 ACOT7LQ6ZUV0 252 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 KCNRGQ8N5I3 272 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 ZNF479Q96JC4 524 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 ODF3Q96PU9 254 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 TXNDC17Q9BRA2 123 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 TM2D2Q9BX73 214 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 ARL6Q9H0F7 186 aa9.51□□□□□ -0.89
CLN3-249ENST00000636685 KRTAP9-6A0A140TA67 174 aa9.5□□□□□ -0.89
CLN3-249ENST00000636685 RBFOX3A6NFN3 312 aa9.5□□□□□ -0.89
CLN3-249ENST00000636685 FAM25EA8MYX2 175 aa9.5□□□□□ -0.89
CLN3-249ENST00000636685 SLC17A3O00476 420 aa9.5□□□□□ -0.89
CLN3-249ENST00000636685 ORM1P02763 201 aa9.5□□□□□ -0.89
CLN3-249ENST00000636685 SLC25A5P05141 298 aaKnown RBP9.5□□□□□ -0.89
CLN3-249ENST00000636685 BTN1A1Q13410 526 aa9.5□□□□□ -0.89
CLN3-249ENST00000636685 ZNF345Q14585 488 aa9.5□□□□□ -0.89
CLN3-249ENST00000636685 MORN5Q5VZ52 161 aa9.5□□□□□ -0.89
CLN3-249ENST00000636685 CYP2G1PQ6ZSU1 146 aa9.5□□□□□ -0.89
CLN3-249ENST00000636685 LYZL2Q7Z4W2 148 aa9.5□□□□□ -0.89
CLN3-249ENST00000636685 INO80EQ8NBZ0 244 aaPredicted RBP9.5□□□□□ -0.89
CLN3-249ENST00000636685 C2orf50Q96LR7 162 aa9.5□□□□□ -0.89
CLN3-249ENST00000636685 SLC50A1Q9BRV3 221 aa9.5□□□□□ -0.89
CLN3-249ENST00000636685 LOC100131303A0A0U1RQF7 123 aa9.49□□□□□ -0.89
CLN3-249ENST00000636685 KANTRA0A1W2PQU2 76 aa9.49□□□□□ -0.89
CLN3-249ENST00000636685 IGLV2-11P01706 119 aa9.49□□□□□ -0.89
CLN3-249ENST00000636685 LINC00869P0C866 280 aa9.49□□□□□ -0.89
CLN3-249ENST00000636685 TDRG1Q3Y452 100 aa9.49□□□□□ -0.89
CLN3-249ENST00000636685 IBA57Q5T440 356 aaKnown RBP9.49□□□□□ -0.89
CLN3-249ENST00000636685 C9orf47Q6ZRZ4 202 aa9.49□□□□□ -0.89
CLN3-249ENST00000636685 PPP1R1CQ8WVI7 109 aa9.49□□□□□ -0.89
CLN3-249ENST00000636685 MED9Q9NWA0 146 aa9.49□□□□□ -0.89
CLN3-249ENST00000636685 TNFSF18Q9UNG2 199 aa9.49□□□□□ -0.89
CLN3-249ENST00000636685 RNASE4P34096 147 aaKnown RBP9.48□□□□□ -0.89
CLN3-249ENST00000636685 PPT1P50897 306 aa9.48□□□□□ -0.89
CLN3-249ENST00000636685 ODF1Q14990 250 aa9.48□□□□□ -0.89
CLN3-249ENST00000636685 PATE2Q6UY27 113 aa9.48□□□□□ -0.89
CLN3-249ENST00000636685 IQCF2Q8IXL9 164 aa9.48□□□□□ -0.89
CLN3-249ENST00000636685 BAALCQ8WXS3 180 aa9.48□□□□□ -0.89
CLN3-249ENST00000636685 SLC25A31Q9H0C2 315 aa9.48□□□□□ -0.89
CLN3-249ENST00000636685 CCSO14618 274 aa9.47□□□□□ -0.89
CLN3-249ENST00000636685 MPDU1O75352 247 aa9.47□□□□□ -0.89
CLN3-249ENST00000636685 PET100P0DJ07 73 aa9.47□□□□□ -0.89
CLN3-249ENST00000636685 TIRAPP58753 221 aa9.47□□□□□ -0.89
CLN3-249ENST00000636685 PLP1P60201 277 aa9.47□□□□□ -0.89
CLN3-249ENST00000636685 Q6ZQT7 251 aa9.47□□□□□ -0.89
CLN3-249ENST00000636685 TMEM37Q8WXS4 190 aa9.47□□□□□ -0.89
CLN3-249ENST00000636685 LPAP08519 4548 aa9.47□□□□□ -0.89
CLN3-249ENST00000636685 TRAV8-6A0A0B4J262 113 aa9.46□□□□□ -0.9
CLN3-249ENST00000636685 SMCO3A2RU48 225 aa9.46□□□□□ -0.9
CLN3-249ENST00000636685 KLLNB2CW77 178 aa9.46□□□□□ -0.9
CLN3-249ENST00000636685 C9JCJ5 164 aa9.46□□□□□ -0.9
CLN3-249ENST00000636685 BCL2L11O43521 198 aa9.46□□□□□ -0.9
CLN3-249ENST00000636685 ERCC8Q13216 396 aa9.46□□□□□ -0.9
CLN3-249ENST00000636685 OR10J3Q5JRS4 329 aa9.46□□□□□ -0.9
CLN3-249ENST00000636685 Q6ZRU5 148 aa9.46□□□□□ -0.9
CLN3-249ENST00000636685 NHLRC2Q8NBF2 726 aa9.46□□□□□ -0.9
CLN3-249ENST00000636685 PHYHIPLQ96FC7 376 aa9.46□□□□□ -0.9
CLN3-249ENST00000636685 FAT4Q6V0I7 4981 aa9.46□□□□□ -0.9
CLN3-249ENST00000636685 PIGBOS1A0A0B4J2F0 54 aa9.45□□□□□ -0.9
CLN3-249ENST00000636685 PITX3O75364 302 aa9.45□□□□□ -0.9
CLN3-249ENST00000636685 LAGE3Q14657 143 aa9.45□□□□□ -0.9
CLN3-249ENST00000636685 Q8N3U1 123 aa9.45□□□□□ -0.9
CLN3-249ENST00000636685 OR10P1Q8NGE3 313 aa9.45□□□□□ -0.9
CLN3-249ENST00000636685 OR10G4Q8NGN3 311 aa9.45□□□□□ -0.9
CLN3-249ENST00000636685 ARPC5LQ9BPX5 153 aa9.45□□□□□ -0.9
CLN3-249ENST00000636685 ARV1Q9H2C2 271 aa9.45□□□□□ -0.9
CLN3-249ENST00000636685 IGHV1OR15-1A0A075B7D0 117 aa9.44□□□□□ -0.9
CLN3-249ENST00000636685 EIF5AP63241 154 aaKnown RBP9.44□□□□□ -0.9
CLN3-249ENST00000636685 SRPXP78539 464 aa9.44□□□□□ -0.9
CLN3-249ENST00000636685 IL15RAQ13261 267 aa9.44□□□□□ -0.9
CLN3-249ENST00000636685 LRRC37A5PQ49AS3 106 aa9.44□□□□□ -0.9
CLN3-249ENST00000636685 COMMD7Q86VX2 200 aa9.44□□□□□ -0.9
CLN3-249ENST00000636685 SAT2Q96F10 170 aaPredicted RBP9.44□□□□□ -0.9
CLN3-249ENST00000636685 MBD2Q9UBB5 411 aa9.44□□□□□ -0.9
CLN3-249ENST00000636685 PXMP4Q9Y6I8 212 aa9.44□□□□□ -0.9
CLN3-249ENST00000636685 H3BP45 60 aa9.43□□□□□ -0.9
CLN3-249ENST00000636685 H3BQ15 152 aa9.43□□□□□ -0.9
CLN3-249ENST00000636685 WRBO00258 174 aa9.43□□□□□ -0.9
CLN3-249ENST00000636685 TAAR5O14804 337 aa9.43□□□□□ -0.9
CLN3-249ENST00000636685 HOXB5P09067 269 aa9.43□□□□□ -0.9
CLN3-249ENST00000636685 SPANXN5Q5MJ07 72 aa9.43□□□□□ -0.9
CLN3-249ENST00000636685 PRR9Q5T870 116 aa9.43□□□□□ -0.9
CLN3-249ENST00000636685 LINC00305Q7Z4B0 112 aa9.43□□□□□ -0.9
CLN3-249ENST00000636685 SH2D6Q7Z4S9 175 aa9.43□□□□□ -0.9
CLN3-249ENST00000636685 S100A7AQ86SG5 101 aa9.43□□□□□ -0.9
CLN3-249ENST00000636685 FAM19A4Q96LR4 140 aa9.43□□□□□ -0.9
CLN3-249ENST00000636685 RNF222A6NCQ9 220 aa9.42□□□□□ -0.9
CLN3-249ENST00000636685 GPX1P07203 203 aa9.42□□□□□ -0.9
CLN3-249ENST00000636685 IGLC2P0DOY2 106 aa9.42□□□□□ -0.9
CLN3-249ENST00000636685 SELENOTP62341 195 aa9.42□□□□□ -0.9
CLN3-249ENST00000636685 RPP30P78346 268 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms