RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 TEX46H3BTG2 121 aa12.79□□□□□ -0.36
CLN3-247ENST00000636351 H7BYZ3 331 aa12.79□□□□□ -0.36
CLN3-247ENST00000636351 CRISP2P16562 243 aa12.79□□□□□ -0.36
CLN3-247ENST00000636351 TAS2R60P59551 318 aa12.79□□□□□ -0.36
CLN3-247ENST00000636351 CYB561D1Q8N8Q1 229 aa12.79□□□□□ -0.36
CLN3-247ENST00000636351 SGK494Q96LW2 274 aa12.79□□□□□ -0.36
CLN3-247ENST00000636351 ATG101Q9BSB4 218 aa12.79□□□□□ -0.36
CLN3-247ENST00000636351 NDFIP1Q9BT67 221 aa12.79□□□□□ -0.36
CLN3-247ENST00000636351 PAGE4O60829 102 aa12.78□□□□□ -0.36
CLN3-247ENST00000636351 PRM2P04554 102 aa12.78□□□□□ -0.36
CLN3-247ENST00000636351 NMBP08949 121 aa12.78□□□□□ -0.36
CLN3-247ENST00000636351 NANOS2P60321 138 aaKnown RBP12.78□□□□□ -0.36
CLN3-247ENST00000636351 ALKAL2Q6UX46 152 aa12.78□□□□□ -0.36
CLN3-247ENST00000636351 ZFAND2AQ8N6M9 145 aa12.78□□□□□ -0.36
CLN3-247ENST00000636351 TRBV7-9A0A0J9YWB2 115 aa12.77□□□□□ -0.37
CLN3-247ENST00000636351 PEX7O00628 323 aa12.77□□□□□ -0.37
CLN3-247ENST00000636351 PPT1P50897 306 aa12.77□□□□□ -0.37
CLN3-247ENST00000636351 PRR9Q5T870 116 aa12.77□□□□□ -0.37
CLN3-247ENST00000636351 LGALS9CQ6DKI2 356 aa12.77□□□□□ -0.37
CLN3-247ENST00000636351 CELA1Q9UNI1 258 aa12.77□□□□□ -0.37
CLN3-247ENST00000636351 LENEPQ9Y5L5 61 aa12.77□□□□□ -0.37
CLN3-247ENST00000636351 ARL2-SNX15V9GYD0 113 aa12.77□□□□□ -0.37
CLN3-247ENST00000636351 F6UZH7 168 aa12.76□□□□□ -0.37
CLN3-247ENST00000636351 ATP5G3P48201 142 aa12.76□□□□□ -0.37
CLN3-247ENST00000636351 CCDC28AQ8IWP9 274 aa12.76□□□□□ -0.37
CLN3-247ENST00000636351 C16orf74Q96GX8 76 aa12.76□□□□□ -0.37
CLN3-247ENST00000636351 TREM1Q9NP99 234 aa12.76□□□□□ -0.37
CLN3-247ENST00000636351 GNG13Q9P2W3 67 aa12.76□□□□□ -0.37
CLN3-247ENST00000636351 FLI1Q01543 452 aaPredicted RBP12.75□□□□□ -0.37
CLN3-247ENST00000636351 PRNTQ86SH4 94 aa12.75□□□□□ -0.37
CLN3-247ENST00000636351 TMEM75Q8N9X5 138 aa12.75□□□□□ -0.37
CLN3-247ENST00000636351 HIST1H2BAQ96A08 127 aa12.75□□□□□ -0.37
CLN3-247ENST00000636351 PYGO2Q9BRQ0 406 aa12.75□□□□□ -0.37
CLN3-247ENST00000636351 PSG8Q9UQ74 426 aa12.75□□□□□ -0.37
CLN3-247ENST00000636351 TRAV34A0A0B4J273 112 aa12.74□□□□□ -0.37
CLN3-247ENST00000636351 TEX48A0A1B0GUV7 120 aa12.74□□□□□ -0.37
CLN3-247ENST00000636351 RGS13O14921 159 aa12.74□□□□□ -0.37
CLN3-247ENST00000636351 SPART-AS1P0CW21 52 aa12.74□□□□□ -0.37
CLN3-247ENST00000636351 AZU1P20160 251 aa12.74□□□□□ -0.37
CLN3-247ENST00000636351 FAM222AQ5U5X8 452 aa12.74□□□□□ -0.37
CLN3-247ENST00000636351 ZNF767PQ75MW2 155 aa12.74□□□□□ -0.37
CLN3-247ENST00000636351 TMEM263Q8WUH6 116 aaKnown RBP12.74□□□□□ -0.37
CLN3-247ENST00000636351 TCEAL7Q9BRU2 100 aa12.74□□□□□ -0.37
CLN3-247ENST00000636351 MANBALQ9NQG1 85 aa12.74□□□□□ -0.37
CLN3-247ENST00000636351 HECTD4Q9Y4D8 3996 aa12.73□□□□□ -0.37
CLN3-247ENST00000636351 TRAV1-1A0A0B4J248 108 aa12.73□□□□□ -0.37
CLN3-247ENST00000636351 FBLL1A6NHQ2 334 aaKnown RBP12.73□□□□□ -0.37
CLN3-247ENST00000636351 CBY3A6NI87 242 aa12.73□□□□□ -0.37
CLN3-247ENST00000636351 CCL20P78556 96 aa12.73□□□□□ -0.37
CLN3-247ENST00000636351 LINC00479Q96M42 142 aa12.73□□□□□ -0.37
CLN3-247ENST00000636351 NAGKQ9UJ70 344 aa12.73□□□□□ -0.37
CLN3-247ENST00000636351 C11orf94C9JXX5 98 aa12.72□□□□□ -0.37
CLN3-247ENST00000636351 ZNF324O75467 553 aaPredicted RBP12.72□□□□□ -0.37
CLN3-247ENST00000636351 IFNA1P01562 189 aa12.72□□□□□ -0.37
CLN3-247ENST00000636351 AKR1C3P42330 323 aa12.72□□□□□ -0.37
CLN3-247ENST00000636351 ZNF493Q6ZR52 646 aa12.72□□□□□ -0.37
CLN3-247ENST00000636351 TVP23CQ96ET8 276 aa12.72□□□□□ -0.37
CLN3-247ENST00000636351 DKK2Q9UBU2 259 aa12.72□□□□□ -0.37
CLN3-247ENST00000636351 IGHV1OR15-1A0A075B7D0 117 aa12.71□□□□□ -0.37
CLN3-247ENST00000636351 IGLV2-11P01706 119 aa12.71□□□□□ -0.37
CLN3-247ENST00000636351 UBE2G1P62253 170 aa12.71□□□□□ -0.37
CLN3-247ENST00000636351 MUC21Q5SSG8 566 aa12.71□□□□□ -0.37
CLN3-247ENST00000636351 Q6ZQT7 251 aa12.71□□□□□ -0.37
CLN3-247ENST00000636351 Q6ZTC4 211 aa12.71□□□□□ -0.37
CLN3-247ENST00000636351 Q86TA4 180 aa12.71□□□□□ -0.37
CLN3-247ENST00000636351 EIF4E3Q8N5X7 224 aaKnown RBP12.71□□□□□ -0.37
CLN3-247ENST00000636351 RNASE8Q8TDE3 154 aaKnown RBP12.71□□□□□ -0.37
CLN3-247ENST00000636351 C8orf49Q96NF6 230 aa12.71□□□□□ -0.37
CLN3-247ENST00000636351 TRAV21A0A0B4J279 112 aa12.7□□□□□ -0.38
CLN3-247ENST00000636351 SCO2A0A1W2PP80 73 aa12.7□□□□□ -0.38
CLN3-247ENST00000636351 SNURFLB1AK76 121 aa12.7□□□□□ -0.38
CLN3-247ENST00000636351 DAD1P61803 113 aa12.7□□□□□ -0.38
CLN3-247ENST00000636351 BLOC1S1P78537 153 aa12.7□□□□□ -0.38
CLN3-247ENST00000636351 Q6AWC8 147 aa12.7□□□□□ -0.38
CLN3-247ENST00000636351 ZNF680Q8NEM1 530 aa12.7□□□□□ -0.38
CLN3-247ENST00000636351 FMC1Q96HJ9 113 aa12.7□□□□□ -0.38
CLN3-247ENST00000636351 TIMM8BQ9Y5J9 83 aaPredicted RBP12.7□□□□□ -0.38
CLN3-247ENST00000636351 VPS13DQ5THJ4 4388 aa12.7□□□□□ -0.38
CLN3-247ENST00000636351 PLAC8L1A1L4L8 177 aa12.69□□□□□ -0.38
CLN3-247ENST00000636351 LYRM9A8MSI8 78 aa12.69□□□□□ -0.38
CLN3-247ENST00000636351 C12orf74Q32Q52 190 aa12.69□□□□□ -0.38
CLN3-247ENST00000636351 SMUG1Q53HV7 270 aa12.69□□□□□ -0.38
CLN3-247ENST00000636351 SAPCD1Q5SSQ6 148 aa12.69□□□□□ -0.38
CLN3-247ENST00000636351 LINC00467Q9BRT7 94 aa12.69□□□□□ -0.38
CLN3-247ENST00000636351 NOP10Q9NPE3 64 aaKnown RBP12.69□□□□□ -0.38
CLN3-247ENST00000636351 GCGP01275 180 aa12.68□□□□□ -0.38
CLN3-247ENST00000636351 FAM159AQ6UWV7 190 aa12.68□□□□□ -0.38
CLN3-247ENST00000636351 C2CD4CQ8TF44 421 aa12.68□□□□□ -0.38
CLN3-247ENST00000636351 TRAV10A0A0B4J240 114 aa12.67□□□□□ -0.38
CLN3-247ENST00000636351 DEFB130BP0DP73 79 aa12.67□□□□□ -0.38
CLN3-247ENST00000636351 DEFB130AP0DP74 79 aa12.67□□□□□ -0.38
CLN3-247ENST00000636351 HTN3P15516 51 aa12.67□□□□□ -0.38
CLN3-247ENST00000636351 ANXA2RQ3ZCQ2 193 aa12.67□□□□□ -0.38
CLN3-247ENST00000636351 GSN-AS1Q9NRJ2 163 aa12.67□□□□□ -0.38
CLN3-247ENST00000636351 TP53TG3Q9ULZ0 132 aa12.67□□□□□ -0.38
CLN3-247ENST00000636351 BCL2P10415 239 aa12.66□□□□□ -0.38
CLN3-247ENST00000636351 ZNF415Q09FC8 603 aa12.66□□□□□ -0.38
CLN3-247ENST00000636351 TMEM183BQ1AE95 376 aa12.66□□□□□ -0.38
CLN3-247ENST00000636351 TMEM183AQ8IXX5 376 aa12.66□□□□□ -0.38
CLN3-247ENST00000636351 TRGV11A0A075B6L2 103 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms