RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 A6NDX4 124 aa8.15□□□□□ -1.1
CUX1-221ENST00000622516 HAX1O00165 279 aa8.15□□□□□ -1.1
CUX1-221ENST00000622516 EDN2P20800 178 aa8.15□□□□□ -1.1
CUX1-221ENST00000622516 RPL11P62913 178 aaKnown RBP8.15□□□□□ -1.1
CUX1-221ENST00000622516 C19orf54Q5BKX5 351 aa8.15□□□□□ -1.1
CUX1-221ENST00000622516 EBLN2Q6P2I7 272 aa8.15□□□□□ -1.1
CUX1-221ENST00000622516 ATP6V0BQ99437 205 aa8.15□□□□□ -1.1
CUX1-221ENST00000622516 MCRIP2Q9BUT9 160 aaKnown RBP8.15□□□□□ -1.1
CUX1-221ENST00000622516 TRAV8-2A0A0B4J237 113 aa8.15□□□□□ -1.11
CUX1-221ENST00000622516 FAM231BA6NCW3 169 aa8.15□□□□□ -1.11
CUX1-221ENST00000622516 RNF223E7ERA6 249 aa8.15□□□□□ -1.11
CUX1-221ENST00000622516 KLF5Q13887 457 aaPredicted RBP8.15□□□□□ -1.11
CUX1-221ENST00000622516 C8orf86Q6ZUL3 223 aa8.15□□□□□ -1.11
CUX1-221ENST00000622516 ITPR3Q14573 2671 aa8.15□□□□□ -1.11
CUX1-221ENST00000622516 COX6B1P14854 86 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 SRD5A1P18405 259 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 DEFB112Q30KQ8 113 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 VAMP8Q9BV40 100 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 MSRB1Q9NZV6 116 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 LOC389332A0A1B0GUA5 103 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 H0Y8G0 127 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 IGHG2P01859 326 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 TEX43Q6ZNM6 134 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 ZNF575Q86XF7 245 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 AMN1Q8IY45 258 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 C20orf144Q9BQM9 153 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 AGPAT4-IT1Q9H0P7 198 aa8.14□□□□□ -1.11
CUX1-221ENST00000622516 FAM181BA6NEQ2 426 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 IGF1P05019 195 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 RIGQ13278 110 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 SPATA12Q7Z6I5 190 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 ITPR2Q14571 2701 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 FLNAP21333 2647 aaKnown RBP8.13□□□□□ -1.11
CUX1-221ENST00000622516 SMKR1H3BMG3 65 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 FXYD7P58549 80 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 OR4X2Q8NGF9 303 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 C16orf92Q96LL3 132 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 HELZ2Q9BYK8 2649 aaKnown RBP8.13□□□□□ -1.11
CUX1-221ENST00000622516 TWIST1Q15672 202 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 KLK9Q2XQG4 91 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 FAM106AQ4KMX7 169 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 DUX5Q96PT3 197 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 KLK9Q9UKQ9 250 aa8.13□□□□□ -1.11
CUX1-221ENST00000622516 MTORP42345 2549 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 IGHV1-24A0A0C4DH33 117 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 FAM223BA6NKX1 122 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 FAM223AQ8IWN6 122 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 ORAOV1Q8WV07 137 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 C20orf173Q96LM9 149 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 SMPXQ9UHP9 88 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 NOTCH2Q04721 2471 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 A4D1N5 150 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 D6R8Y8 96 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 SPRY2O43597 315 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 UBE2V1Q13404 147 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 NDFIP1Q9BT67 221 aa8.12□□□□□ -1.11
CUX1-221ENST00000622516 RAB9AP51151 201 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 SPXQ9BT56 116 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 C11orf21Q9P2W6 132 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 A0A087X0K7 114 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 C2orf70A6NJV1 201 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 F6UB75 175 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 GAS8-AS1O95177 125 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 NCR2O95944 276 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 FOXE3Q13461 319 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 SPATA45Q537H7 98 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 OCIAD2Q56VL3 154 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 LINC01356Q8N9X3 169 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 FER1L6-AS1Q8NA97 138 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 GLMPQ8WWB7 406 aa8.11□□□□□ -1.11
CUX1-221ENST00000622516 A0A1B0GV72 72 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 FABP5P3A8MUU1 101 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 HIST2H2BCQ6DN03 193 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 PMCHL2Q9BQD1 86 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 SLC50A1Q9BRV3 221 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 U3KQE9 123 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 AKAP9Q99996 3911 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 IFI27P40305 119 aaPredicted RBP8.1□□□□□ -1.11
CUX1-221ENST00000622516 LOXL1Q08397 574 aaPredicted RBP8.1□□□□□ -1.11
CUX1-221ENST00000622516 TMEM78Q5T7P6 136 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 GPHB5Q86YW7 130 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 ZNF738Q8NE65 137 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 TP73-AS1Q9UF72 201 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 WNK1Q9H4A3 2382 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 A0A096LNT2 108 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 IGKV3D-20A0A0C4DH25 116 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 HIST2H2BDQ6DRA6 164 aa8.1□□□□□ -1.11
CUX1-221ENST00000622516 NIPBLQ6KC79 2804 aaeCLIP8.09□□□□□ -1.113e-10■■■■■ 76.4
CUX1-221ENST00000622516 LEPROTL1O95214 131 aa8.09□□□□□ -1.11
CUX1-221ENST00000622516 CRIP2P52943 208 aaPredicted RBP8.09□□□□□ -1.11
CUX1-221ENST00000622516 WFDC3Q8IUB2 231 aa8.09□□□□□ -1.11
CUX1-221ENST00000622516 OR4C5Q8NGB2 326 aa8.09□□□□□ -1.11
CUX1-221ENST00000622516 PRSS3P2Q8NHM4 247 aa8.09□□□□□ -1.11
CUX1-221ENST00000622516 NPFFR1Q9GZQ6 430 aa8.09□□□□□ -1.11
CUX1-221ENST00000622516 BEX4Q9NWD9 120 aaPredicted RBP8.09□□□□□ -1.11
CUX1-221ENST00000622516 AGRNO00468 2067 aa8.09□□□□□ -1.11
CUX1-221ENST00000622516 SLC25A16P16260 332 aa8.09□□□□□ -1.11
CUX1-221ENST00000622516 KIR3DS1Q14943 382 aa8.09□□□□□ -1.11
CUX1-221ENST00000622516 PRR9Q5T870 116 aa8.09□□□□□ -1.11
CUX1-221ENST00000622516 CR1P17927 2039 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms