RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 FAM74A4Q5TZK3 123 aa12.05□□□□□ -0.48
CPSF1-213ENST00000620219 CDPF1Q6NVV7 123 aa12.05□□□□□ -0.48
CPSF1-213ENST00000620219 Q6ZSV7 163 aa12.05□□□□□ -0.48
CPSF1-213ENST00000620219 SPRY2O43597 315 aa12.05□□□□□ -0.48
CPSF1-213ENST00000620219 PRDM13Q9H4Q3 707 aa12.05□□□□□ -0.48
CPSF1-213ENST00000620219 ZNF702PQ9H963 129 aa12.05□□□□□ -0.48
CPSF1-213ENST00000620219 OVOL1O14753 267 aa12.05□□□□□ -0.48
CPSF1-213ENST00000620219 M0R2Z0 102 aa12.04□□□□□ -0.48
CPSF1-213ENST00000620219 ARMS2P0C7Q2 107 aa12.04□□□□□ -0.48
CPSF1-213ENST00000620219 EDN2P20800 178 aa12.04□□□□□ -0.48
CPSF1-213ENST00000620219 SLAQ13239 276 aa12.04□□□□□ -0.48
CPSF1-213ENST00000620219 LTAP01374 205 aa12.04□□□□□ -0.48
CPSF1-213ENST00000620219 CD7P09564 240 aa12.04□□□□□ -0.48
CPSF1-213ENST00000620219 UBE2E2Q96LR5 201 aa12.04□□□□□ -0.48
CPSF1-213ENST00000620219 TRAV12-2A0A075B6T6 113 aa12.03□□□□□ -0.48
CPSF1-213ENST00000620219 RPS20P60866 119 aaKnown RBP12.03□□□□□ -0.48
CPSF1-213ENST00000620219 C16orf54Q6UWD8 224 aa12.03□□□□□ -0.48
CPSF1-213ENST00000620219 CITED2Q99967 270 aaPredicted RBP12.03□□□□□ -0.48
CPSF1-213ENST00000620219 SMAD5-AS1Q9Y6J3 95 aa12.03□□□□□ -0.48
CPSF1-213ENST00000620219 NUPR1O60356 82 aa12.02□□□□□ -0.48
CPSF1-213ENST00000620219 TYMSP04818 313 aa12.02□□□□□ -0.48
CPSF1-213ENST00000620219 SPINK13Q1W4C9 94 aa12.02□□□□□ -0.48
CPSF1-213ENST00000620219 TCF21O43680 179 aa12.02□□□□□ -0.49
CPSF1-213ENST00000620219 PSMB8P28062 276 aa12.02□□□□□ -0.49
CPSF1-213ENST00000620219 PMCHL1Q16048 86 aa12.02□□□□□ -0.49
CPSF1-213ENST00000620219 TMEM136Q6ZRR5 245 aa12.02□□□□□ -0.49
CPSF1-213ENST00000620219 OR8A1Q8NGG7 326 aa12.02□□□□□ -0.49
CPSF1-213ENST00000620219 UBR5O95071 2799 aaPredicted RBP12.02□□□□□ -0.49
CPSF1-213ENST00000620219 IFITM10A6NMD0 228 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 CD28P10747 220 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 GNB1LQ9BYB4 327 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 MS4A6AQ9H2W1 248 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 KNCNA6PVL3 124 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 TSTD3H0UI37 97 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 TSPOP30536 169 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 RAX2Q96IS3 184 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 TRAV21A0A0B4J279 112 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 TMEM213A2RRL7 107 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 CCL24O00175 119 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 DEFB104AQ8WTQ1 72 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 MYCNOSP40205 109 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 ASIPP42127 132 aa12.01□□□□□ -0.49
CPSF1-213ENST00000620219 FBN2P35556 2912 aa12□□□□□ -0.49
CPSF1-213ENST00000620219 NF1P21359 2839 aa12□□□□□ -0.49
CPSF1-213ENST00000620219 SMIM27A0A1W2PRY6 76 aa12□□□□□ -0.49
CPSF1-213ENST00000620219 FBLL1A6NHQ2 334 aaKnown RBP12□□□□□ -0.49
CPSF1-213ENST00000620219 WIPF2Q8TF74 440 aaPredicted RBP12□□□□□ -0.49
CPSF1-213ENST00000620219 LINC00477Q96M19 166 aa12□□□□□ -0.49
CPSF1-213ENST00000620219 NCR2O95944 276 aa12□□□□□ -0.49
CPSF1-213ENST00000620219 TRAV9-1A0A075B6T8 112 aa12□□□□□ -0.49
CPSF1-213ENST00000620219 ATOH7Q8N100 152 aa12□□□□□ -0.49
CPSF1-213ENST00000620219 OR4C46A6NHA9 309 aa11.99□□□□□ -0.49
CPSF1-213ENST00000620219 CBY3A6NI87 242 aa11.99□□□□□ -0.49
CPSF1-213ENST00000620219 IGLV1-40P01703 118 aa11.99□□□□□ -0.49
CPSF1-213ENST00000620219 GTSF1Q8WW33 167 aa11.99□□□□□ -0.49
CPSF1-213ENST00000620219 A0A096LNT2 108 aa11.99□□□□□ -0.49
CPSF1-213ENST00000620219 CLPSL1A2RUU4 121 aa11.99□□□□□ -0.49
CPSF1-213ENST00000620219 C2orf70A6NJV1 201 aa11.99□□□□□ -0.49
CPSF1-213ENST00000620219 DLX4Q92988 240 aaPredicted RBP11.99□□□□□ -0.49
CPSF1-213ENST00000620219 PAM16Q9Y3D7 125 aa11.99□□□□□ -0.49
CPSF1-213ENST00000620219 GPHB5Q86YW7 130 aa11.98□□□□□ -0.49
CPSF1-213ENST00000620219 STHQ8IWL8 128 aa11.98□□□□□ -0.49
CPSF1-213ENST00000620219 RCHY1Q96PM5 261 aa11.98□□□□□ -0.49
CPSF1-213ENST00000620219 KLF12Q9Y4X4 402 aa11.98□□□□□ -0.49
CPSF1-213ENST00000620219 LINC01587Q99440 93 aa11.98□□□□□ -0.49
CPSF1-213ENST00000620219 FAM231DQ6ZW35 169 aa11.98□□□□□ -0.49
CPSF1-213ENST00000620219 ZNF492Q9P255 531 aa11.98□□□□□ -0.49
CPSF1-213ENST00000620219 KLK9Q9UKQ9 250 aa11.98□□□□□ -0.49
CPSF1-213ENST00000620219 SMKR1H3BMG3 65 aa11.97□□□□□ -0.49
CPSF1-213ENST00000620219 EVI2AP22794 236 aa11.97□□□□□ -0.49
CPSF1-213ENST00000620219 BATFQ16520 125 aa11.97□□□□□ -0.49
CPSF1-213ENST00000620219 APRG1Q8IVJ8 170 aa11.97□□□□□ -0.49
CPSF1-213ENST00000620219 AMN1Q8IY45 258 aa11.97□□□□□ -0.49
CPSF1-213ENST00000620219 OR9G4Q8NGQ1 327 aa11.97□□□□□ -0.49
CPSF1-213ENST00000620219 GSN-AS1Q9NRJ2 163 aa11.97□□□□□ -0.49
CPSF1-213ENST00000620219 RPL35AP18077 110 aaKnown RBP11.97□□□□□ -0.49
CPSF1-213ENST00000620219 PRELID3AQ96N28 172 aa11.96□□□□□ -0.49
CPSF1-213ENST00000620219 NDUFS6O75380 124 aaKnown RBP11.96□□□□□ -0.49
CPSF1-213ENST00000620219 TSSC4Q9Y5U2 329 aaPredicted RBP11.96□□□□□ -0.49
CPSF1-213ENST00000620219 TCTAP57738 103 aa11.96□□□□□ -0.5
CPSF1-213ENST00000620219 SAMD13Q5VXD3 122 aa11.96□□□□□ -0.5
CPSF1-213ENST00000620219 Q6AWC8 147 aa11.96□□□□□ -0.5
CPSF1-213ENST00000620219 AGRNO00468 2067 aa11.96□□□□□ -0.5
CPSF1-213ENST00000620219 SMIM12Q96EX1 92 aa11.96□□□□□ -0.5
CPSF1-213ENST00000620219 MXRA5Q9NR99 2828 aa11.95□□□□□ -0.5
CPSF1-213ENST00000620219 MLST8Q9BVC4 326 aa11.95□□□□□ -0.5
CPSF1-213ENST00000620219 DUSP14O95147 198 aaKnown RBP11.95□□□□□ -0.5
CPSF1-213ENST00000620219 IGLV2-11P01706 119 aa11.95□□□□□ -0.5
CPSF1-213ENST00000620219 EMP1P54849 157 aa11.95□□□□□ -0.5
CPSF1-213ENST00000620219 TMEM61Q8N0U2 210 aa11.95□□□□□ -0.5
CPSF1-213ENST00000620219 XCL2Q9UBD3 114 aa11.95□□□□□ -0.5
CPSF1-213ENST00000620219 VPS13CQ709C8 3753 aa11.95□□□□□ -0.5
CPSF1-213ENST00000620219 ZNF80P51504 273 aaPredicted RBP11.95□□□□□ -0.5
CPSF1-213ENST00000620219 DEFA6Q01524 100 aa11.95□□□□□ -0.5
CPSF1-213ENST00000620219 LINC01006Q8NI28 216 aa11.95□□□□□ -0.5
CPSF1-213ENST00000620219 ESM1Q9NQ30 184 aa11.95□□□□□ -0.5
CPSF1-213ENST00000620219 ZNF705AQ6ZN79 300 aaPredicted RBP11.94□□□□□ -0.5
CPSF1-213ENST00000620219 LINC00587B1AMM8 73 aa11.94□□□□□ -0.5
CPSF1-213ENST00000620219 TMEM86BQ8N661 226 aa11.94□□□□□ -0.5
CPSF1-213ENST00000620219 C20orf173Q96LM9 149 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms