RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 MBD3L4A6NDZ8 208 aaPredicted RBP8.03□□□□□ -1.12
VPS39-214ENST00000614932 MBD3L3A6NE82 208 aaPredicted RBP8.03□□□□□ -1.12
VPS39-214ENST00000614932 MBD3L5A6NJ08 208 aaPredicted RBP8.03□□□□□ -1.12
VPS39-214ENST00000614932 MYCNOSP40205 109 aa8.03□□□□□ -1.12
VPS39-214ENST00000614932 LINC01559Q495D7 138 aa8.03□□□□□ -1.12
VPS39-214ENST00000614932 TMEM155Q4W5P6 130 aa8.03□□□□□ -1.12
VPS39-214ENST00000614932 DEFB108BQ8NET1 73 aa8.03□□□□□ -1.12
VPS39-214ENST00000614932 FOXC2Q99958 501 aa8.03□□□□□ -1.12
VPS39-214ENST00000614932 IGKV1OR2-108A0A075B7D4 117 aa8.02□□□□□ -1.12
VPS39-214ENST00000614932 TRAV40A0A0B4J280 105 aa8.02□□□□□ -1.12
VPS39-214ENST00000614932 TIMM23O14925 209 aa8.02□□□□□ -1.12
VPS39-214ENST00000614932 ZCCHC24Q8N2G6 241 aaKnown RBP8.02□□□□□ -1.12
VPS39-214ENST00000614932 ZNRF1Q8ND25 227 aa8.02□□□□□ -1.12
VPS39-214ENST00000614932 NTN5Q8WTR8 489 aaPredicted RBP8.02□□□□□ -1.12
VPS39-214ENST00000614932 LEAP2Q969E1 77 aa8.02□□□□□ -1.12
VPS39-214ENST00000614932 TIMD4Q96H15 378 aa8.02□□□□□ -1.12
VPS39-214ENST00000614932 ASCL2Q99929 193 aa8.02□□□□□ -1.12
VPS39-214ENST00000614932 CXXC4Q9H2H0 198 aa8.02□□□□□ -1.12
VPS39-214ENST00000614932 TET2Q6N021 2002 aaPredicted RBP8.02□□□□□ -1.13
VPS39-214ENST00000614932 SPTA1P02549 2419 aa8.02□□□□□ -1.13
VPS39-214ENST00000614932 RBAKDNA6NC62 111 aa8.02□□□□□ -1.13
VPS39-214ENST00000614932 ERVK-16P61578 105 aa8.02□□□□□ -1.13
VPS39-214ENST00000614932 UTF1Q5T230 341 aa8.02□□□□□ -1.13
VPS39-214ENST00000614932 TEX36Q5VZQ5 186 aa8.02□□□□□ -1.13
VPS39-214ENST00000614932 DUX4L9Q6RFH8 374 aaPredicted RBP8.02□□□□□ -1.13
VPS39-214ENST00000614932 SPANXDQ9BXN6 97 aa8.02□□□□□ -1.13
VPS39-214ENST00000614932 C4orf26Q17RF5 130 aa8.02□□□□□ -1.13
VPS39-214ENST00000614932 CD177Q8N6Q3 437 aa8.02□□□□□ -1.13
VPS39-214ENST00000614932 SLC25A15Q9Y619 301 aa8.02□□□□□ -1.13
VPS39-214ENST00000614932 FAM236AA0A1B0GUQ0 79 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 FAM236BA0A1B0GV22 79 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 PGPA6NDG6 321 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 J3QLI3 93 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 HRCT1Q6UXD1 115 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 Q8IYB0 196 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 FXYD5Q96DB9 178 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 TRAV3A0A0B4J244 114 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 TMEM30CPA0ZSE6 113 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 FCGR3BO75015 233 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 RPL13AP40429 203 aaKnown RBP8.01□□□□□ -1.13
VPS39-214ENST00000614932 MZT1Q08AG7 82 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 SRSF9Q13242 221 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS39-214ENST00000614932 FAM104BQ5XKR9 115 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 GAGE2AQ6NT46 116 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 SRSF12Q8WXF0 261 aaKnown RBP8.01□□□□□ -1.13
VPS39-214ENST00000614932 IGF2RP11717 2491 aa8.01□□□□□ -1.13
VPS39-214ENST00000614932 SRSF2Q01130 221 aaKnown RBP8□□□□□ -1.13
VPS39-214ENST00000614932 IGFBPL1Q8WX77 278 aa8□□□□□ -1.13
VPS39-214ENST00000614932 FLYWCH2Q96CP2 140 aaKnown RBP8□□□□□ -1.13
VPS39-214ENST00000614932 PRNDQ9UKY0 176 aa8□□□□□ -1.13
VPS39-214ENST00000614932 CRYGDP07320 174 aa8□□□□□ -1.13
VPS39-214ENST00000614932 LEPP41159 167 aa8□□□□□ -1.13
VPS39-214ENST00000614932 ZNF56Q15929 161 aa8□□□□□ -1.13
VPS39-214ENST00000614932 VKORC1L1Q8N0U8 176 aa8□□□□□ -1.13
VPS39-214ENST00000614932 POM121L12Q8N7R1 296 aa8□□□□□ -1.13
VPS39-214ENST00000614932 MRPL20Q9BYC9 149 aaKnown RBP8□□□□□ -1.13
VPS39-214ENST00000614932 TLN1Q9Y490 2541 aaKnown RBP7.99□□□□□ -1.13
VPS39-214ENST00000614932 TRGV11A0A075B6L2 103 aa7.99□□□□□ -1.13
VPS39-214ENST00000614932 LGALS9O00182 355 aa7.99□□□□□ -1.13
VPS39-214ENST00000614932 COX7A2P2O60397 106 aa7.99□□□□□ -1.13
VPS39-214ENST00000614932 IGLV1-44P01699 117 aa7.99□□□□□ -1.13
VPS39-214ENST00000614932 LGALS1P09382 135 aaKnown RBP7.99□□□□□ -1.13
VPS39-214ENST00000614932 PRDX2P32119 198 aa7.99□□□□□ -1.13
VPS39-214ENST00000614932 SEC61GP60059 68 aa7.99□□□□□ -1.13
VPS39-214ENST00000614932 PMVKQ15126 192 aa7.99□□□□□ -1.13
VPS39-214ENST00000614932 NDUFA11Q86Y39 141 aa7.99□□□□□ -1.13
VPS39-214ENST00000614932 AMN1Q8IY45 258 aa7.99□□□□□ -1.13
VPS39-214ENST00000614932 MBD3L2Q8NHZ7 208 aaPredicted RBP7.99□□□□□ -1.13
VPS39-214ENST00000614932 MRPL35Q9NZE8 188 aaKnown RBP7.99□□□□□ -1.13
VPS39-214ENST00000614932 CD3EP07766 207 aa7.99□□□□□ -1.13
VPS39-214ENST00000614932 DLX6P56179 175 aa7.99□□□□□ -1.13
VPS39-214ENST00000614932 ZNF672Q499Z4 452 aaPredicted RBP7.99□□□□□ -1.13
VPS39-214ENST00000614932 MRPL51Q4U2R6 128 aaKnown RBP7.99□□□□□ -1.13
VPS39-214ENST00000614932 IGKV1D-17A0A075B6S4 117 aa7.98□□□□□ -1.13
VPS39-214ENST00000614932 EFNA4P52798 201 aa7.98□□□□□ -1.13
VPS39-214ENST00000614932 EBI3Q14213 229 aa7.98□□□□□ -1.13
VPS39-214ENST00000614932 C10orf113Q5VZT2 155 aa7.98□□□□□ -1.13
VPS39-214ENST00000614932 ZNF714Q96N38 554 aa7.98□□□□□ -1.13
VPS39-214ENST00000614932 IMUPQ9GZP8 106 aa7.98□□□□□ -1.13
VPS39-214ENST00000614932 SVEP1Q4LDE5 3571 aa7.98□□□□□ -1.13
VPS39-214ENST00000614932 LRBAP50851 2863 aa7.98□□□□□ -1.13
VPS39-214ENST00000614932 CKS2P33552 79 aa7.98□□□□□ -1.13
VPS39-214ENST00000614932 ATRXP46100 2492 aa7.98□□□□□ -1.13
VPS39-214ENST00000614932 CRIP2P52943 208 aaPredicted RBP7.98□□□□□ -1.13
VPS39-214ENST00000614932 GNG12Q9UBI6 72 aa7.98□□□□□ -1.13
VPS39-214ENST00000614932 TEX49A0A1B0GTD5 131 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 OOEPA6NGQ2 149 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 C15orf61A6NNL5 157 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 CCL8P80075 99 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 LINC01546A6NGU7 62 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 TCRAP04437 139 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 PLNP26678 52 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 RPL39P5Q59GN2 51 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 Q86TA4 180 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 MYOZ3Q8TDC0 251 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 DPH3Q96FX2 82 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 LINC01600Q96MT4 127 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 TPRP12270 2363 aaKnown RBP7.97□□□□□ -1.13
VPS39-214ENST00000614932 TACC2O95359 2948 aa7.97□□□□□ -1.13
VPS39-214ENST00000614932 CSMD1Q96PZ7 3565 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms