RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 C2orf91Q6ZV80 131 aa3.99□□□□□ -1.77
VPS13D-213ENST00000613099 ICOSQ9Y6W8 199 aa3.99□□□□□ -1.77
VPS13D-213ENST00000613099 DAND5Q8N907 189 aa3.99□□□□□ -1.77
VPS13D-213ENST00000613099 SIGLEC15Q6ZMC9 328 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 Q86TA4 180 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 UCN2Q96RP3 112 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 IGHG3P01860 377 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 CRYGBP07316 175 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 IGLV3-21P80748 117 aaPredicted RBP3.98□□□□□ -1.77
VPS13D-213ENST00000613099 LYZL4Q96KX0 146 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 TMEM14CQ9P0S9 112 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 ARMS2P0C7Q2 107 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 CD28P10747 220 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 C20orf204Q6ZNR8 217 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 J3QLI3 93 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 NPPCP23582 126 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 FXYD7P58549 80 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 CRIPAKQ8N1N5 446 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 RPL35AP18077 110 aaKnown RBP3.98□□□□□ -1.77
VPS13D-213ENST00000613099 IL17DQ8TAD2 202 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 NDUFA12Q9UI09 145 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 PSMB8P28062 276 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 GFERP55789 205 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 ZC2HC1AQ96GY0 325 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 LINC01619G3V211 115 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 NXPH1P58417 271 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 IGHV3-21A0A0B4J1V1 117 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 H3BUA1 57 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 IGFBPL1Q8WX77 278 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 H0YGX0 51 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 RNASE4P34096 147 aaKnown RBP3.98□□□□□ -1.77
VPS13D-213ENST00000613099 PMAIP1Q13794 54 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 DSCR8Q96T75 97 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 USP9XQ93008 2570 aaPredicted RBP3.98□□□□□ -1.77
VPS13D-213ENST00000613099 AGRNO00468 2067 aa3.98□□□□□ -1.77
VPS13D-213ENST00000613099 C2orf66Q6UXQ4 117 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 MUSTN1Q8IVN3 82 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 MRPL14Q6P1L8 145 aaKnown RBP3.97□□□□□ -1.77
VPS13D-213ENST00000613099 IGKV3D-7A0A0C4DH55 119 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 ELANEP08246 267 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 PCOLCEQ15113 449 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 SMKR1H3BMG3 65 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 AGPAT4-IT1Q9H0P7 198 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 GPR179Q6PRD1 2367 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 LENEPQ9Y5L5 61 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 PCSK5Q92824 1860 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 CISD3P0C7P0 127 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 TRPT1Q86TN4 253 aaKnown RBP3.97□□□□□ -1.77
VPS13D-213ENST00000613099 PAX4O43316 350 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 TMEM200BQ69YZ2 307 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 LINC00158P58513 81 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 M0R1B8 84 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 ZNF826PQ6ZT77 177 aa3.97□□□□□ -1.77
VPS13D-213ENST00000613099 EXOC3-AS1Q8N2X6 119 aa3.96□□□□□ -1.77
VPS13D-213ENST00000613099 RPL18AQ02543 176 aaKnown RBP3.96□□□□□ -1.78
VPS13D-213ENST00000613099 TP53TG3Q9ULZ0 132 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 IGLV3-12A0A075B6K2 115 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 TRAV3A0A0B4J244 114 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 SLC25A29Q8N8R3 303 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 FAM168AQ92567 244 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 DPH3P1Q9H4G8 78 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 MBD3L2Q8NHZ7 208 aaPredicted RBP3.96□□□□□ -1.78
VPS13D-213ENST00000613099 SLC25A53Q5H9E4 307 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 CCL4L1Q8NHW4 92 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 SHANK2-AS3Q9BTD1 123 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 DOPEY1Q5JWR5 2465 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 PKD1L2Q7Z442 2459 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 FAM60AQ9NP50 221 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 SNRPD3P62318 126 aaKnown RBP3.96□□□□□ -1.78
VPS13D-213ENST00000613099 WFDC11Q8NEX6 87 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 FUSP35637 526 aaKnown RBP eCLIP3.96□□□□□ -1.78
VPS13D-213ENST00000613099 FOXS1O43638 330 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 LILRA6Q6PI73 481 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 TMEM14BQ9NUH8 114 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 B9A039 149 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 SLC25A45Q8N413 288 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 TIMM17BO60830 172 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 CCL3P10147 92 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 EGR2P11161 476 aaPredicted RBP3.96□□□□□ -1.78
VPS13D-213ENST00000613099 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.96□□□□□ -1.78
VPS13D-213ENST00000613099 Q8N976 141 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 CDIP1Q9H305 208 aa3.96□□□□□ -1.78
VPS13D-213ENST00000613099 TRAV4A0A0B4J268 109 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 IGKV3-11P04433 115 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 RHOHQ15669 191 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 DDB2Q92466 427 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 C11orf1Q9H5F2 150 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 IGHV3-48P01763 117 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 CELA2AP08217 269 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 CCL3L1P16619 93 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 SMIM2Q9BVW6 85 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 RAI1Q7Z5J4 1906 aaPredicted RBP3.95□□□□□ -1.78
VPS13D-213ENST00000613099 TRBV19A0A075B6N1 114 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 BUB3O43684 328 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 FHL1Q13642 323 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 IGKV1-27A0A075B6S5 117 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 PRB4P10163 310 aaPredicted RBP3.95□□□□□ -1.78
VPS13D-213ENST00000613099 RSPO4Q2I0M5 234 aaPredicted RBP3.95□□□□□ -1.78
VPS13D-213ENST00000613099 FAM120AOSQ5T036 256 aa3.95□□□□□ -1.78
VPS13D-213ENST00000613099 LINC00477Q96M19 166 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms