RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ZNF324O75467 553 aaPredicted RBP11.87□□□□□ -0.51
CCDC28A-202ENST00000611852 AZU1P20160 251 aa11.87□□□□□ -0.51
CCDC28A-202ENST00000611852 EMP1P54849 157 aa11.87□□□□□ -0.51
CCDC28A-202ENST00000611852 CASC10Q5T4H9 136 aa11.87□□□□□ -0.51
CCDC28A-202ENST00000611852 ZFAND6Q6FIF0 208 aa11.87□□□□□ -0.51
CCDC28A-202ENST00000611852 CYB561D1Q8N8Q1 229 aa11.87□□□□□ -0.51
CCDC28A-202ENST00000611852 SGK494Q96LW2 274 aa11.87□□□□□ -0.51
CCDC28A-202ENST00000611852 FAM210AQ96ND0 272 aa11.87□□□□□ -0.51
CCDC28A-202ENST00000611852 NIPSNAP3BQ9BS92 247 aa11.87□□□□□ -0.51
CCDC28A-202ENST00000611852 TREM1Q9NP99 234 aa11.87□□□□□ -0.51
CCDC28A-202ENST00000611852 CELA1Q9UNI1 258 aa11.87□□□□□ -0.51
CCDC28A-202ENST00000611852 PAGE4O60829 102 aa11.86□□□□□ -0.51
CCDC28A-202ENST00000611852 IGLV2-11P01706 119 aa11.86□□□□□ -0.51
CCDC28A-202ENST00000611852 HTN1P15515 57 aa11.86□□□□□ -0.51
CCDC28A-202ENST00000611852 NANOS2P60321 138 aaKnown RBP11.86□□□□□ -0.51
CCDC28A-202ENST00000611852 CST9LP1Q5W188 147 aa11.86□□□□□ -0.51
CCDC28A-202ENST00000611852 CCDC28AQ8IWP9 274 aa11.86□□□□□ -0.51
CCDC28A-202ENST00000611852 TVP23CQ96ET8 276 aa11.86□□□□□ -0.51
CCDC28A-202ENST00000611852 IFNA1P01562 189 aa11.86□□□□□ -0.51
CCDC28A-202ENST00000611852 CCL20P78556 96 aa11.86□□□□□ -0.51
CCDC28A-202ENST00000611852 PYGO2Q9BRQ0 406 aa11.86□□□□□ -0.51
CCDC28A-202ENST00000611852 EIF5A2Q9GZV4 153 aaKnown RBP11.86□□□□□ -0.51
CCDC28A-202ENST00000611852 PEX7O00628 323 aa11.85□□□□□ -0.51
CCDC28A-202ENST00000611852 ATP5G3P48201 142 aa11.85□□□□□ -0.51
CCDC28A-202ENST00000611852 PMS2P11Q13670 270 aa11.85□□□□□ -0.51
CCDC28A-202ENST00000611852 PEA15Q15121 130 aa11.85□□□□□ -0.51
CCDC28A-202ENST00000611852 Q6ZQT7 251 aa11.85□□□□□ -0.51
CCDC28A-202ENST00000611852 TMEM75Q8N9X5 138 aa11.85□□□□□ -0.51
CCDC28A-202ENST00000611852 HIST1H2BAQ96A08 127 aa11.85□□□□□ -0.51
CCDC28A-202ENST00000611852 LINC00479Q96M42 142 aa11.85□□□□□ -0.51
CCDC28A-202ENST00000611852 CSMD3Q7Z407 3707 aa11.84□□□□□ -0.51
CCDC28A-202ENST00000611852 PLAC8L1A1L4L8 177 aa11.84□□□□□ -0.51
CCDC28A-202ENST00000611852 CXorf65A6NEN9 183 aa11.84□□□□□ -0.51
CCDC28A-202ENST00000611852 PPT1P50897 306 aa11.84□□□□□ -0.51
CCDC28A-202ENST00000611852 FLI1Q01543 452 aaPredicted RBP11.84□□□□□ -0.51
CCDC28A-202ENST00000611852 RNASE8Q8TDE3 154 aaKnown RBP11.84□□□□□ -0.51
CCDC28A-202ENST00000611852 TMEM263Q8WUH6 116 aaKnown RBP11.84□□□□□ -0.51
CCDC28A-202ENST00000611852 C16orf74Q96GX8 76 aa11.84□□□□□ -0.51
CCDC28A-202ENST00000611852 TCEAL7Q9BRU2 100 aa11.84□□□□□ -0.51
CCDC28A-202ENST00000611852 SMDT1Q9H4I9 107 aa11.84□□□□□ -0.51
CCDC28A-202ENST00000611852 DKK2Q9UBU2 259 aa11.84□□□□□ -0.51
CCDC28A-202ENST00000611852 PSG8Q9UQ74 426 aa11.84□□□□□ -0.51
CCDC28A-202ENST00000611852 RBFOX3A6NFN3 312 aa11.83□□□□□ -0.52
CCDC28A-202ENST00000611852 FBLL1A6NHQ2 334 aaKnown RBP11.83□□□□□ -0.52
CCDC28A-202ENST00000611852 SPART-AS1P0CW21 52 aa11.83□□□□□ -0.52
CCDC28A-202ENST00000611852 FAM222AQ5U5X8 452 aa11.83□□□□□ -0.52
CCDC28A-202ENST00000611852 Q6AWC8 147 aa11.83□□□□□ -0.52
CCDC28A-202ENST00000611852 ZNF493Q6ZR52 646 aa11.83□□□□□ -0.52
CCDC28A-202ENST00000611852 LINC00467Q9BRT7 94 aa11.83□□□□□ -0.52
CCDC28A-202ENST00000611852 GNG13Q9P2W3 67 aa11.83□□□□□ -0.52
CCDC28A-202ENST00000611852 TRAV34A0A0B4J273 112 aa11.82□□□□□ -0.52
CCDC28A-202ENST00000611852 SRSF3P84103 164 aaKnown RBP11.82□□□□□ -0.52
CCDC28A-202ENST00000611852 C12orf74Q32Q52 190 aa11.82□□□□□ -0.52
CCDC28A-202ENST00000611852 PRNTQ86SH4 94 aa11.82□□□□□ -0.52
CCDC28A-202ENST00000611852 NDFIP1Q9BT67 221 aa11.82□□□□□ -0.52
CCDC28A-202ENST00000611852 TMEM218A2RU14 115 aa11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 F6UZH7 168 aa11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 BCL2P10415 239 aa11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 TAGLN2P37802 199 aaKnown RBP11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 PHLDA1Q8WV24 401 aaPredicted RBP11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 C8orf49Q96NF6 230 aa11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 MANBALQ9NQG1 85 aa11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 TEX48A0A1B0GUV7 120 aa11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 C11orf94C9JXX5 98 aa11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 SFTA3P0C7M3 94 aa11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 ANXA2RQ3ZCQ2 193 aa11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 ZNF506Q5JVG8 444 aa11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 Q6ZTC4 211 aa11.81□□□□□ -0.52
CCDC28A-202ENST00000611852 IGHV1OR15-1A0A075B7D0 117 aa11.8□□□□□ -0.52
CCDC28A-202ENST00000611852 SAPCD1Q5SSQ6 148 aa11.8□□□□□ -0.52
CCDC28A-202ENST00000611852 CEMP1Q6PRD7 247 aaPredicted RBP11.8□□□□□ -0.52
CCDC28A-202ENST00000611852 KLF12Q9Y4X4 402 aa11.8□□□□□ -0.52
CCDC28A-202ENST00000611852 TIMM8BQ9Y5J9 83 aaPredicted RBP11.8□□□□□ -0.52
CCDC28A-202ENST00000611852 STARD9Q9P2P6 4700 aa11.79□□□□□ -0.52
CCDC28A-202ENST00000611852 NUPR2A6NF83 97 aa11.79□□□□□ -0.52
CCDC28A-202ENST00000611852 CBY3A6NI87 242 aa11.79□□□□□ -0.52
CCDC28A-202ENST00000611852 LYRM9A8MSI8 78 aa11.79□□□□□ -0.52
CCDC28A-202ENST00000611852 F8W036 122 aa11.79□□□□□ -0.52
CCDC28A-202ENST00000611852 Q86TA4 180 aa11.79□□□□□ -0.52
CCDC28A-202ENST00000611852 FMC1Q96HJ9 113 aa11.79□□□□□ -0.52
CCDC28A-202ENST00000611852 VAX2Q9UIW0 290 aa11.79□□□□□ -0.52
CCDC28A-202ENST00000611852 TRAV21A0A0B4J279 112 aa11.78□□□□□ -0.52
CCDC28A-202ENST00000611852 SCO2A0A1W2PP80 73 aa11.78□□□□□ -0.52
CCDC28A-202ENST00000611852 ZNF80P51504 273 aaPredicted RBP11.78□□□□□ -0.52
CCDC28A-202ENST00000611852 UBE2G1P62253 170 aa11.78□□□□□ -0.52
CCDC28A-202ENST00000611852 MUC21Q5SSG8 566 aa11.78□□□□□ -0.52
CCDC28A-202ENST00000611852 C11orf72Q8NBR9 251 aa11.78□□□□□ -0.52
CCDC28A-202ENST00000611852 C2CD4CQ8TF44 421 aa11.78□□□□□ -0.52
CCDC28A-202ENST00000611852 SEC11CQ9BY50 192 aa11.78□□□□□ -0.52
CCDC28A-202ENST00000611852 NOP10Q9NPE3 64 aaKnown RBP11.78□□□□□ -0.52
CCDC28A-202ENST00000611852 TP53TG3Q9ULZ0 132 aa11.78□□□□□ -0.52
CCDC28A-202ENST00000611852 TENM2Q9NT68 2774 aa11.77□□□□□ -0.52
CCDC28A-202ENST00000611852 GCGP01275 180 aa11.77□□□□□ -0.52
CCDC28A-202ENST00000611852 AKR1C3P42330 323 aa11.77□□□□□ -0.52
CCDC28A-202ENST00000611852 TMEM183BQ1AE95 376 aa11.77□□□□□ -0.52
CCDC28A-202ENST00000611852 SMUG1Q53HV7 270 aa11.77□□□□□ -0.52
CCDC28A-202ENST00000611852 TXNDC17Q9BRA2 123 aa11.77□□□□□ -0.52
CCDC28A-202ENST00000611852 GSN-AS1Q9NRJ2 163 aa11.77□□□□□ -0.52
CCDC28A-202ENST00000611852 TRBV6-1A0A0K0K1D8 114 aa11.76□□□□□ -0.53
CCDC28A-202ENST00000611852 SNURFLB1AK76 121 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms