RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 NDFIP1Q9BT67 221 aa13.92□□□□□ -0.18
UPF1-209ENST00000600310 TMEM189A5PLL7 270 aa13.91□□□□□ -0.18
UPF1-209ENST00000600310 IFNA1P01562 189 aa13.91□□□□□ -0.18
UPF1-209ENST00000600310 PRM2P04554 102 aa13.91□□□□□ -0.18
UPF1-209ENST00000600310 PRNTQ86SH4 94 aa13.91□□□□□ -0.18
UPF1-209ENST00000600310 ZNF680Q8NEM1 530 aa13.91□□□□□ -0.18
UPF1-209ENST00000600310 TXNDC17Q9BRA2 123 aa13.91□□□□□ -0.18
UPF1-209ENST00000600310 PYGO2Q9BRQ0 406 aa13.91□□□□□ -0.18
UPF1-209ENST00000600310 KLF12Q9Y4X4 402 aa13.91□□□□□ -0.18
UPF1-209ENST00000600310 LOC102723971A0A1B0GUV8 181 aa13.9□□□□□ -0.18
UPF1-209ENST00000600310 SAPCD1Q5SSQ6 148 aa13.9□□□□□ -0.18
UPF1-209ENST00000600310 Q6AWC8 147 aa13.9□□□□□ -0.18
UPF1-209ENST00000600310 IL17DQ8TAD2 202 aa13.9□□□□□ -0.18
UPF1-209ENST00000600310 KMT2CQ8NEZ4 4911 aaKnown RBP13.9□□□□□ -0.18
UPF1-209ENST00000600310 TRBV6-1A0A0K0K1D8 114 aa13.89□□□□□ -0.19
UPF1-209ENST00000600310 SCO2A0A1W2PP80 73 aa13.89□□□□□ -0.19
UPF1-209ENST00000600310 BCL2P10415 239 aa13.89□□□□□ -0.19
UPF1-209ENST00000600310 AZU1P20160 251 aa13.89□□□□□ -0.19
UPF1-209ENST00000600310 TAGLN2P37802 199 aaKnown RBP13.89□□□□□ -0.19
UPF1-209ENST00000600310 AKR1C3P42330 323 aa13.89□□□□□ -0.19
UPF1-209ENST00000600310 TMEM183BQ1AE95 376 aa13.89□□□□□ -0.19
UPF1-209ENST00000600310 C2CD4CQ8TF44 421 aa13.89□□□□□ -0.19
UPF1-209ENST00000600310 FMC1Q96HJ9 113 aa13.89□□□□□ -0.19
UPF1-209ENST00000600310 LINC00467Q9BRT7 94 aa13.89□□□□□ -0.19
UPF1-209ENST00000600310 HTN1P15515 57 aa13.88□□□□□ -0.19
UPF1-209ENST00000600310 Q6ZQT7 251 aa13.88□□□□□ -0.19
UPF1-209ENST00000600310 Q86TA4 180 aa13.88□□□□□ -0.19
UPF1-209ENST00000600310 MUC7Q8TAX7 377 aa13.88□□□□□ -0.19
UPF1-209ENST00000600310 C8orf49Q96NF6 230 aa13.88□□□□□ -0.19
UPF1-209ENST00000600310 VAX2Q9UIW0 290 aa13.88□□□□□ -0.19
UPF1-209ENST00000600310 STAB2Q8WWQ8 2551 aa13.87□□□□□ -0.19
UPF1-209ENST00000600310 S100A9P06702 114 aaKnown RBP13.87□□□□□ -0.19
UPF1-209ENST00000600310 EMP1P54849 157 aa13.87□□□□□ -0.19
UPF1-209ENST00000600310 UBE2G1P62253 170 aa13.87□□□□□ -0.19
UPF1-209ENST00000600310 MEF2BQ02080 365 aaPredicted RBP13.87□□□□□ -0.19
UPF1-209ENST00000600310 ZNF493Q6ZR52 646 aa13.87□□□□□ -0.19
UPF1-209ENST00000600310 C11orf45Q8TAV5 145 aa13.87□□□□□ -0.19
UPF1-209ENST00000600310 RNASE8Q8TDE3 154 aaKnown RBP13.87□□□□□ -0.19
UPF1-209ENST00000600310 C11orf52Q96A22 123 aa13.87□□□□□ -0.19
UPF1-209ENST00000600310 C16orf74Q96GX8 76 aa13.87□□□□□ -0.19
UPF1-209ENST00000600310 ZFP30Q9Y2G7 519 aa13.87□□□□□ -0.19
UPF1-209ENST00000600310 TRAV21A0A0B4J279 112 aa13.86□□□□□ -0.19
UPF1-209ENST00000600310 PLAC8L1A1L4L8 177 aa13.86□□□□□ -0.19
UPF1-209ENST00000600310 RGS13O14921 159 aa13.86□□□□□ -0.19
UPF1-209ENST00000600310 SMUG1Q53HV7 270 aa13.86□□□□□ -0.19
UPF1-209ENST00000600310 TMEM263Q8WUH6 116 aaKnown RBP13.86□□□□□ -0.19
UPF1-209ENST00000600310 IGHV1OR15-1A0A075B7D0 117 aa13.85□□□□□ -0.19
UPF1-209ENST00000600310 CXorf65A6NEN9 183 aa13.85□□□□□ -0.19
UPF1-209ENST00000600310 PDE6DO43924 150 aa13.85□□□□□ -0.19
UPF1-209ENST00000600310 ANXA2RQ3ZCQ2 193 aa13.85□□□□□ -0.19
UPF1-209ENST00000600310 EIF4E3Q8N5X7 224 aaKnown RBP13.85□□□□□ -0.19
UPF1-209ENST00000600310 DKK2Q9UBU2 259 aa13.85□□□□□ -0.19
UPF1-209ENST00000600310 CELA1Q9UNI1 258 aa13.85□□□□□ -0.19
UPF1-209ENST00000600310 GCGP01275 180 aa13.84□□□□□ -0.19
UPF1-209ENST00000600310 LTAP01374 205 aa13.84□□□□□ -0.19
UPF1-209ENST00000600310 SPART-AS1P0CW21 52 aa13.84□□□□□ -0.19
UPF1-209ENST00000600310 ZNF80P51504 273 aaPredicted RBP13.84□□□□□ -0.19
UPF1-209ENST00000600310 COX8CQ7Z4L0 72 aa13.84□□□□□ -0.19
UPF1-209ENST00000600310 TEX48A0A1B0GUV7 120 aa13.83□□□□□ -0.2
UPF1-209ENST00000600310 RBFOX3A6NFN3 312 aa13.83□□□□□ -0.2
UPF1-209ENST00000600310 CBY3A6NI87 242 aa13.83□□□□□ -0.2
UPF1-209ENST00000600310 C3orf84H3BNL1 204 aa13.83□□□□□ -0.2
UPF1-209ENST00000600310 NANOS2P60321 138 aaKnown RBP13.83□□□□□ -0.2
UPF1-209ENST00000600310 MUC21Q5SSG8 566 aa13.83□□□□□ -0.2
UPF1-209ENST00000600310 FAM222AQ5U5X8 452 aa13.83□□□□□ -0.2
UPF1-209ENST00000600310 PFN1P07737 140 aaKnown RBP13.82□□□□□ -0.2
UPF1-209ENST00000600310 ZNF506Q5JVG8 444 aa13.82□□□□□ -0.2
UPF1-209ENST00000600310 FAM159AQ6UWV7 190 aa13.82□□□□□ -0.2
UPF1-209ENST00000600310 TMEM183AQ8IXX5 376 aa13.82□□□□□ -0.2
UPF1-209ENST00000600310 LYRM9A8MSI8 78 aa13.81□□□□□ -0.2
UPF1-209ENST00000600310 RPL35P42766 123 aaKnown RBP13.81□□□□□ -0.2
UPF1-209ENST00000600310 C12orf74Q32Q52 190 aa13.81□□□□□ -0.2
UPF1-209ENST00000600310 TDRG1Q3Y452 100 aa13.81□□□□□ -0.2
UPF1-209ENST00000600310 C11orf72Q8NBR9 251 aa13.81□□□□□ -0.2
UPF1-209ENST00000600310 PCNPQ8WW12 178 aaKnown RBP13.81□□□□□ -0.2
UPF1-209ENST00000600310 TP53TG3Q9ULZ0 132 aa13.81□□□□□ -0.2
UPF1-209ENST00000600310 TIMM8BQ9Y5J9 83 aaPredicted RBP13.81□□□□□ -0.2
UPF1-209ENST00000600310 IBA57Q5T440 356 aaKnown RBP13.8□□□□□ -0.2
UPF1-209ENST00000600310 BAGE2Q86Y30 109 aa13.8□□□□□ -0.2
UPF1-209ENST00000600310 ZC2HC1AQ96GY0 325 aa13.8□□□□□ -0.2
UPF1-209ENST00000600310 FAM210AQ96ND0 272 aa13.8□□□□□ -0.2
UPF1-209ENST00000600310 DERL1Q9BUN8 251 aa13.8□□□□□ -0.2
UPF1-209ENST00000600310 MED9Q9NWA0 146 aa13.8□□□□□ -0.2
UPF1-209ENST00000600310 NAGKQ9UJ70 344 aa13.8□□□□□ -0.2
UPF1-209ENST00000600310 FABP5P3A8MUU1 101 aa13.79□□□□□ -0.2
UPF1-209ENST00000600310 SNURFLB1AK76 121 aa13.79□□□□□ -0.2
UPF1-209ENST00000600310 CRIP1P50238 77 aa13.79□□□□□ -0.2
UPF1-209ENST00000600310 DAZ2Q13117 558 aaKnown RBP13.79□□□□□ -0.2
UPF1-209ENST00000600310 MLST8Q9BVC4 326 aa13.79□□□□□ -0.2
UPF1-209ENST00000600310 NOP10Q9NPE3 64 aaKnown RBP13.79□□□□□ -0.2
UPF1-209ENST00000600310 GSN-AS1Q9NRJ2 163 aa13.79□□□□□ -0.2
UPF1-209ENST00000600310 TRGV11A0A075B6L2 103 aa13.78□□□□□ -0.2
UPF1-209ENST00000600310 NDUFS6O75380 124 aaKnown RBP13.78□□□□□ -0.2
UPF1-209ENST00000600310 TCL1AP56279 114 aa13.78□□□□□ -0.2
UPF1-209ENST00000600310 TOR2AQ5JU69 321 aa13.78□□□□□ -0.2
UPF1-209ENST00000600310 ZFAND6Q6FIF0 208 aa13.78□□□□□ -0.2
UPF1-209ENST00000600310 ZNF767PQ75MW2 155 aa13.78□□□□□ -0.2
UPF1-209ENST00000600310 KCNS1Q96KK3 526 aa13.78□□□□□ -0.2
UPF1-209ENST00000600310 C11orf21Q9P2W6 132 aa13.78□□□□□ -0.2
UPF1-209ENST00000600310 TMEM250H0YL14 139 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms