RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 BUB3O43684 328 aa16.16■□□□□ 0.18
UPF1-207ENST00000599848 SPANXA1Q9NS26 97 aa16.16■□□□□ 0.18
UPF1-207ENST00000599848 PI4KAP42356 2102 aa16.16■□□□□ 0.18
UPF1-207ENST00000599848 BOD1L2Q8IYS8 172 aa16.15■□□□□ 0.18
UPF1-207ENST00000599848 CACNA1HO95180 2353 aa16.15■□□□□ 0.18
UPF1-207ENST00000599848 CAMK2N2Q96S95 79 aa16.15■□□□□ 0.18
UPF1-207ENST00000599848 SMKR1H3BMG3 65 aa16.15■□□□□ 0.18
UPF1-207ENST00000599848 ADORA2A-AS1P86434 159 aa16.15■□□□□ 0.18
UPF1-207ENST00000599848 UTF1Q5T230 341 aa16.15■□□□□ 0.18
UPF1-207ENST00000599848 GAGE2AQ6NT46 116 aa16.15■□□□□ 0.18
UPF1-207ENST00000599848 K7EMT4 169 aa16.15■□□□□ 0.18
UPF1-207ENST00000599848 WT1-ASQ06250 92 aa16.15■□□□□ 0.18
UPF1-207ENST00000599848 SIGLEC8Q9NYZ4 499 aa16.15■□□□□ 0.18
UPF1-207ENST00000599848 USF3Q68DE3 2245 aa16.14■□□□□ 0.17
UPF1-207ENST00000599848 ZNRD1Q9P1U0 126 aa16.14■□□□□ 0.17
UPF1-207ENST00000599848 TRBV20-1A0A075B6N2 111 aa16.14■□□□□ 0.17
UPF1-207ENST00000599848 IGKV1-6A0A0C4DH72 117 aa16.14■□□□□ 0.17
UPF1-207ENST00000599848 SHISA2Q6UWI4 295 aa16.14■□□□□ 0.17
UPF1-207ENST00000599848 ZNF625Q96I27 306 aaPredicted RBP16.14■□□□□ 0.17
UPF1-207ENST00000599848 C20orf144Q9BQM9 153 aa16.14■□□□□ 0.17
UPF1-207ENST00000599848 WDR86Q86TI4 376 aa16.14■□□□□ 0.17
UPF1-207ENST00000599848 Q6ZRM9 215 aa16.14■□□□□ 0.17
UPF1-207ENST00000599848 ANAPC13Q9BS18 74 aa16.14■□□□□ 0.17
UPF1-207ENST00000599848 A0A0G2JRQ6 117 aa16.13■□□□□ 0.17
UPF1-207ENST00000599848 C4orf3Q8WVX3 66 aa16.13■□□□□ 0.17
UPF1-207ENST00000599848 GSN-AS1Q9NRJ2 163 aa16.13■□□□□ 0.17
UPF1-207ENST00000599848 DAZ2Q13117 558 aaKnown RBP16.13■□□□□ 0.17
UPF1-207ENST00000599848 DAZ4Q86SG3 579 aaKnown RBP16.13■□□□□ 0.17
UPF1-207ENST00000599848 DAZ3Q9NR90 486 aaKnown RBP16.13■□□□□ 0.17
UPF1-207ENST00000599848 MEGF9Q9H1U4 602 aa16.13■□□□□ 0.17
UPF1-207ENST00000599848 FREM3P0C091 2139 aa16.13■□□□□ 0.17
UPF1-207ENST00000599848 IGHV3-38A0A0C4DH36 116 aa16.13■□□□□ 0.17
UPF1-207ENST00000599848 GPR179Q6PRD1 2367 aa16.13■□□□□ 0.17
UPF1-207ENST00000599848 A0A096LPF7 62 aa16.12■□□□□ 0.17
UPF1-207ENST00000599848 LINC00205P59089 165 aa16.12■□□□□ 0.17
UPF1-207ENST00000599848 PRSS57Q6UWY2 283 aa16.12■□□□□ 0.17
UPF1-207ENST00000599848 IGFBPL1Q8WX77 278 aa16.12■□□□□ 0.17
UPF1-207ENST00000599848 NYNRINQ9P2P1 1898 aaKnown RBP16.12■□□□□ 0.17
UPF1-207ENST00000599848 NDUFS7O75251 213 aa16.11■□□□□ 0.17
UPF1-207ENST00000599848 SIGMAR1Q99720 223 aa16.11■□□□□ 0.17
UPF1-207ENST00000599848 GYPEP15421 78 aa16.11■□□□□ 0.17
UPF1-207ENST00000599848 NDUFA11Q86Y39 141 aa16.11■□□□□ 0.17
UPF1-207ENST00000599848 SLC25A29Q8N8R3 303 aa16.11■□□□□ 0.17
UPF1-207ENST00000599848 COX11Q9Y6N1 276 aa16.11■□□□□ 0.17
UPF1-207ENST00000599848 ZFAND6Q6FIF0 208 aa16.11■□□□□ 0.17
UPF1-207ENST00000599848 ZNF491Q8N8L2 437 aa16.11■□□□□ 0.17
UPF1-207ENST00000599848 IGHV4-38-2P0DP08 117 aa16.1■□□□□ 0.17
UPF1-207ENST00000599848 CITED1Q99966 193 aa16.1■□□□□ 0.17
UPF1-207ENST00000599848 PRORYQ9H606 182 aa16.1■□□□□ 0.17
UPF1-207ENST00000599848 ARFGEF3Q5TH69 2177 aa16.1■□□□□ 0.17
UPF1-207ENST00000599848 TMEM213A2RRL7 107 aa16.1■□□□□ 0.17
UPF1-207ENST00000599848 NDUFB1O75438 58 aa16.1■□□□□ 0.17
UPF1-207ENST00000599848 RPL18AQ02543 176 aaKnown RBP16.1■□□□□ 0.17
UPF1-207ENST00000599848 SLURP1P55000 103 aa16.1■□□□□ 0.17
UPF1-207ENST00000599848 DEFB104AQ8WTQ1 72 aa16.1■□□□□ 0.17
UPF1-207ENST00000599848 K7EQD1 137 aa16.1■□□□□ 0.17
UPF1-207ENST00000599848 GRNP28799 593 aaKnown RBP16.09■□□□□ 0.17
UPF1-207ENST00000599848 DUX4L9Q6RFH8 374 aaPredicted RBP16.09■□□□□ 0.17
UPF1-207ENST00000599848 TCF20Q9UGU0 1960 aaKnown RBP16.09■□□□□ 0.17
UPF1-207ENST00000599848 PRB4P10163 310 aaPredicted RBP16.09■□□□□ 0.17
UPF1-207ENST00000599848 MRPL52Q86TS9 123 aaKnown RBP16.09■□□□□ 0.17
UPF1-207ENST00000599848 CTSZQ9UBR2 303 aa16.09■□□□□ 0.17
UPF1-207ENST00000599848 IL15RAQ13261 267 aa16.09■□□□□ 0.17
UPF1-207ENST00000599848 HIST1H2BLQ99880 126 aa16.09■□□□□ 0.17
UPF1-207ENST00000599848 SPTAN1Q13813 2472 aaKnown RBP16.08■□□□□ 0.17
UPF1-207ENST00000599848 ANK1P16157 1881 aa16.08■□□□□ 0.16
UPF1-207ENST00000599848 FNDC1Q4ZHG4 1894 aaPredicted RBP16.08■□□□□ 0.16
UPF1-207ENST00000599848 FUSP35637 526 aaKnown RBP eCLIP16.08■□□□□ 0.16
UPF1-207ENST00000599848 Q0VG73 95 aa16.08■□□□□ 0.16
UPF1-207ENST00000599848 XCL1P47992 114 aa16.08■□□□□ 0.16
UPF1-207ENST00000599848 BVES-AS1Q5T3Y7 98 aa16.08■□□□□ 0.16
UPF1-207ENST00000599848 COX7A2LO14548 114 aa16.07■□□□□ 0.16
UPF1-207ENST00000599848 CXCL5P42830 114 aa16.07■□□□□ 0.16
UPF1-207ENST00000599848 MRPL51Q4U2R6 128 aaKnown RBP16.06■□□□□ 0.16
UPF1-207ENST00000599848 RNF183Q96D59 192 aa16.06■□□□□ 0.16
UPF1-207ENST00000599848 C3orf79P0CE67 100 aa16.06■□□□□ 0.16
UPF1-207ENST00000599848 UBE2AP49459 152 aa16.06■□□□□ 0.16
UPF1-207ENST00000599848 FANCD2OSQ96PS1 177 aa16.06■□□□□ 0.16
UPF1-207ENST00000599848 NDUFS6O75380 124 aaKnown RBP16.06■□□□□ 0.16
UPF1-207ENST00000599848 GPHB5Q86YW7 130 aa16.06■□□□□ 0.16
UPF1-207ENST00000599848 TPSG1Q9NRR2 321 aa16.06■□□□□ 0.16
UPF1-207ENST00000599848 NDUFA1O15239 70 aa16.06■□□□□ 0.16
UPF1-207ENST00000599848 WT1P19544 449 aaPredicted RBP16.05■□□□□ 0.16
UPF1-207ENST00000599848 DEFB136Q30KP8 78 aa16.05■□□□□ 0.16
UPF1-207ENST00000599848 TICRRQ7Z2Z1 1910 aa16.05■□□□□ 0.16
UPF1-207ENST00000599848 CADP27708 2225 aa16.05■□□□□ 0.16
UPF1-207ENST00000599848 CFHR4Q92496 578 aa16.05■□□□□ 0.16
UPF1-207ENST00000599848 AJUBAQ96IF1 538 aa16.05■□□□□ 0.16
UPF1-207ENST00000599848 KIAA1671Q9BY89 1806 aa16.05■□□□□ 0.16
UPF1-207ENST00000599848 OCIAD2Q56VL3 154 aa16.05■□□□□ 0.16
UPF1-207ENST00000599848 Q6ZQT7 251 aa16.05■□□□□ 0.16
UPF1-207ENST00000599848 A8MWP6 167 aa16.04■□□□□ 0.16
UPF1-207ENST00000599848 HIST3H2BBQ8N257 126 aa16.04■□□□□ 0.16
UPF1-207ENST00000599848 IGHV7-81A0A0B4J1V7 117 aa16.04■□□□□ 0.16
UPF1-207ENST00000599848 LINC01545Q5VT33 79 aa16.04■□□□□ 0.16
UPF1-207ENST00000599848 C5orf24Q7Z6I8 188 aa16.04■□□□□ 0.16
UPF1-207ENST00000599848 LRRK1Q38SD2 2015 aa16.03■□□□□ 0.16
UPF1-207ENST00000599848 IGLC7A0M8Q6 106 aa16.03■□□□□ 0.16
UPF1-207ENST00000599848 C9JAW5 83 aa16.03■□□□□ 0.16
UPF1-207ENST00000599848 F8VRH5 84 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms