RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 RAB24Q969Q5 203 aa12.46□□□□□ -0.41
SHKBP1-204ENST00000594862 ST6GAL2Q96JF0 529 aa12.46□□□□□ -0.41
SHKBP1-204ENST00000594862 ACTR3CQ9C0K3 210 aaPredicted RBP12.46□□□□□ -0.41
SHKBP1-204ENST00000594862 GSN-AS1Q9NRJ2 163 aa12.46□□□□□ -0.41
SHKBP1-204ENST00000594862 TMEM167BQ9NRX6 74 aa12.46□□□□□ -0.41
SHKBP1-204ENST00000594862 TRGV2A0A075B6R0 118 aa12.45□□□□□ -0.42
SHKBP1-204ENST00000594862 K7EQM0 130 aa12.45□□□□□ -0.42
SHKBP1-204ENST00000594862 NUDT3O95989 172 aa12.45□□□□□ -0.42
SHKBP1-204ENST00000594862 CXorf1O96002 111 aa12.45□□□□□ -0.42
SHKBP1-204ENST00000594862 CCL18P55774 89 aa12.45□□□□□ -0.42
SHKBP1-204ENST00000594862 ZNF415Q09FC8 603 aa12.45□□□□□ -0.42
SHKBP1-204ENST00000594862 PRR9Q5T870 116 aa12.45□□□□□ -0.42
SHKBP1-204ENST00000594862 VPS13DQ5THJ4 4388 aa12.45□□□□□ -0.42
SHKBP1-204ENST00000594862 OR5I1Q13606 314 aa12.44□□□□□ -0.42
SHKBP1-204ENST00000594862 Q6AWC8 147 aa12.44□□□□□ -0.42
SHKBP1-204ENST00000594862 Q6ZTI0 123 aa12.44□□□□□ -0.42
SHKBP1-204ENST00000594862 C5orf17Q8NAS9 161 aa12.44□□□□□ -0.42
SHKBP1-204ENST00000594862 NDFIP1Q9BT67 221 aa12.44□□□□□ -0.42
SHKBP1-204ENST00000594862 RPH3ALQ9UNE2 315 aa12.44□□□□□ -0.42
SHKBP1-204ENST00000594862 TRGV11A0A075B6L2 103 aa12.43□□□□□ -0.42
SHKBP1-204ENST00000594862 TRGV1A0A0A0MS02 117 aa12.43□□□□□ -0.42
SHKBP1-204ENST00000594862 FBLL1A6NHQ2 334 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-204ENST00000594862 HMGB3O15347 200 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-204ENST00000594862 SPINK4O60575 86 aa12.43□□□□□ -0.42
SHKBP1-204ENST00000594862 GCHFRP30047 84 aa12.43□□□□□ -0.42
SHKBP1-204ENST00000594862 RPL7L1Q6DKI1 246 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-204ENST00000594862 FAM159AQ6UWV7 190 aa12.43□□□□□ -0.42
SHKBP1-204ENST00000594862 GOLT1AQ6ZVE7 132 aa12.43□□□□□ -0.42
SHKBP1-204ENST00000594862 SUN5Q8TC36 379 aa12.43□□□□□ -0.42
SHKBP1-204ENST00000594862 SH3BGRL3Q9H299 93 aa12.43□□□□□ -0.42
SHKBP1-204ENST00000594862 TRAV26-1A0A087WT03 109 aa12.42□□□□□ -0.42
SHKBP1-204ENST00000594862 EIF3GO75821 320 aaKnown RBP eCLIP12.42□□□□□ -0.42
SHKBP1-204ENST00000594862 SOHLH1Q5JUK2 328 aa12.42□□□□□ -0.42
SHKBP1-204ENST00000594862 TMPRSS5Q9H3S3 457 aa12.42□□□□□ -0.42
SHKBP1-204ENST00000594862 KLF12Q9Y4X4 402 aa12.42□□□□□ -0.42
SHKBP1-204ENST00000594862 ARPC5O15511 151 aa12.41□□□□□ -0.42
SHKBP1-204ENST00000594862 DNAH6Q9C0G6 4158 aa12.4□□□□□ -0.42
SHKBP1-204ENST00000594862 TRAV21A0A0B4J279 112 aa12.4□□□□□ -0.42
SHKBP1-204ENST00000594862 CTXND1A0A1B0GTU2 59 aa12.4□□□□□ -0.42
SHKBP1-204ENST00000594862 TDRG1Q3Y452 100 aa12.4□□□□□ -0.42
SHKBP1-204ENST00000594862 AKR1C8PQ5T2L2 129 aa12.4□□□□□ -0.42
SHKBP1-204ENST00000594862 SPXQ9BT56 116 aa12.4□□□□□ -0.42
SHKBP1-204ENST00000594862 TREM1Q9NP99 234 aa12.4□□□□□ -0.42
SHKBP1-204ENST00000594862 DNAH10Q8IVF4 4471 aa12.4□□□□□ -0.42
SHKBP1-204ENST00000594862 A0A1W2PRE2 83 aa12.39□□□□□ -0.43
SHKBP1-204ENST00000594862 G3V3Q6 166 aa12.39□□□□□ -0.43
SHKBP1-204ENST00000594862 TCRAP04437 139 aa12.39□□□□□ -0.43
SHKBP1-204ENST00000594862 HOXA5P20719 270 aa12.39□□□□□ -0.43
SHKBP1-204ENST00000594862 SLAQ13239 276 aa12.39□□□□□ -0.43
SHKBP1-204ENST00000594862 ZNF345Q14585 488 aa12.39□□□□□ -0.43
SHKBP1-204ENST00000594862 MUC21Q5SSG8 566 aa12.39□□□□□ -0.43
SHKBP1-204ENST00000594862 Q6ZR54 194 aa12.39□□□□□ -0.43
SHKBP1-204ENST00000594862 KCNS1Q96KK3 526 aa12.39□□□□□ -0.43
SHKBP1-204ENST00000594862 TP53TG3Q9ULZ0 132 aa12.39□□□□□ -0.43
SHKBP1-204ENST00000594862 IGLV2-18A0A075B6J9 118 aa12.38□□□□□ -0.43
SHKBP1-204ENST00000594862 M0R2N4 97 aa12.38□□□□□ -0.43
SHKBP1-204ENST00000594862 ZFP69Q49AA0 526 aa12.38□□□□□ -0.43
SHKBP1-204ENST00000594862 IQCF2Q8IXL9 164 aa12.38□□□□□ -0.43
SHKBP1-204ENST00000594862 CYB561D1Q8N8Q1 229 aa12.38□□□□□ -0.43
SHKBP1-204ENST00000594862 NKX6-2Q9C056 277 aaPredicted RBP12.38□□□□□ -0.43
SHKBP1-204ENST00000594862 HERC2O95714 4834 aa12.38□□□□□ -0.43
SHKBP1-204ENST00000594862 NACAE9PAV3 2078 aa12.38□□□□□ -0.43
SHKBP1-204ENST00000594862 GNG5P63218 68 aa12.37□□□□□ -0.43
SHKBP1-204ENST00000594862 NAGKQ9UJ70 344 aa12.37□□□□□ -0.43
SHKBP1-204ENST00000594862 HECTD4Q9Y4D8 3996 aa12.37□□□□□ -0.43
SHKBP1-204ENST00000594862 TRAV8-1A0A0A6YYK1 113 aa12.36□□□□□ -0.43
SHKBP1-204ENST00000594862 A0A0J9YY99 117 aa12.36□□□□□ -0.43
SHKBP1-204ENST00000594862 GGTLC3B5MD39 225 aa12.36□□□□□ -0.43
SHKBP1-204ENST00000594862 SUMO1P63165 101 aaKnown RBP12.36□□□□□ -0.43
SHKBP1-204ENST00000594862 TMEM183BQ1AE95 376 aa12.36□□□□□ -0.43
SHKBP1-204ENST00000594862 TMEM183AQ8IXX5 376 aa12.36□□□□□ -0.43
SHKBP1-204ENST00000594862 TMEM75Q8N9X5 138 aa12.36□□□□□ -0.43
SHKBP1-204ENST00000594862 ZNRF2Q8NHG8 242 aa12.36□□□□□ -0.43
SHKBP1-204ENST00000594862 SDF2L1Q9HCN8 221 aa12.36□□□□□ -0.43
SHKBP1-204ENST00000594862 MRPL16Q9NX20 251 aaKnown RBP12.36□□□□□ -0.43
SHKBP1-204ENST00000594862 EPDR1Q9UM22 224 aa12.36□□□□□ -0.43
SHKBP1-204ENST00000594862 PPT1P50897 306 aa12.35□□□□□ -0.43
SHKBP1-204ENST00000594862 FLI1Q01543 452 aaPredicted RBP12.35□□□□□ -0.43
SHKBP1-204ENST00000594862 SAPCD1Q5SSQ6 148 aa12.35□□□□□ -0.43
SHKBP1-204ENST00000594862 Q6ZQT7 251 aa12.35□□□□□ -0.43
SHKBP1-204ENST00000594862 SSX7Q7RTT5 188 aa12.35□□□□□ -0.43
SHKBP1-204ENST00000594862 PRO0255Q9UI72 69 aa12.35□□□□□ -0.43
SHKBP1-204ENST00000594862 LINC00588Q9Y4M8 146 aa12.35□□□□□ -0.43
SHKBP1-204ENST00000594862 HMSDA8MTL9 139 aa12.34□□□□□ -0.43
SHKBP1-204ENST00000594862 F6UZH7 168 aa12.34□□□□□ -0.43
SHKBP1-204ENST00000594862 TTC32Q5I0X7 151 aa12.34□□□□□ -0.43
SHKBP1-204ENST00000594862 C1orf134Q5TEV5 83 aa12.34□□□□□ -0.43
SHKBP1-204ENST00000594862 KCNRGQ8N5I3 272 aa12.34□□□□□ -0.43
SHKBP1-204ENST00000594862 STOML3Q8TAV4 291 aa12.34□□□□□ -0.43
SHKBP1-204ENST00000594862 RASL10AQ92737 203 aa12.34□□□□□ -0.43
SHKBP1-204ENST00000594862 UPK3BQ9BT76 320 aa12.34□□□□□ -0.43
SHKBP1-204ENST00000594862 CYTL1Q9NRR1 136 aa12.34□□□□□ -0.43
SHKBP1-204ENST00000594862 MDFICQ9P1T7 246 aa12.34□□□□□ -0.43
SHKBP1-204ENST00000594862 PSG8Q9UQ74 426 aa12.34□□□□□ -0.43
SHKBP1-204ENST00000594862 A0A0D9SG52 128 aa12.33□□□□□ -0.44
SHKBP1-204ENST00000594862 NBDYA0A0U1RRE5 68 aa12.33□□□□□ -0.44
SHKBP1-204ENST00000594862 MAP1LC3B2A6NCE7 125 aa12.33□□□□□ -0.44
SHKBP1-204ENST00000594862 PRSS29PA6NIE9 313 aa12.33□□□□□ -0.44
SHKBP1-204ENST00000594862 EIF5AP63241 154 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-204ENST00000594862 ZNF726P1Q15940 193 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms