RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 QRFPP83859 136 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 MYL5Q02045 173 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 HIST2H2BEQ16778 126 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.16□□□□□ -1.9
SMAD4-216ENST00000593223 C6orf52Q5T4I8 152 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 SSX8Q7RTT4 187 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 PDPNQ86YL7 162 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 GPHB5Q86YW7 130 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 RPP25LQ8N5L8 163 aaKnown RBP3.16□□□□□ -1.9
SMAD4-216ENST00000593223 Q8N9L7 120 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 OR5D14Q8NGL3 314 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 HIST1H2BHQ93079 126 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 SDF2Q99470 211 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 HIST1H2BNQ99877 126 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 HIST1H2BMQ99879 126 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 TBL1YQ9BQ87 522 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 MIEN1Q9BRT3 115 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 SNRNP25Q9BV90 132 aaKnown RBP3.16□□□□□ -1.9
SMAD4-216ENST00000593223 MRPL32Q9BYC8 188 aaKnown RBP3.16□□□□□ -1.9
SMAD4-216ENST00000593223 DUSP21Q9H596 190 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 SCN8AQ9UQD0 1980 aa3.16□□□□□ -1.9
SMAD4-216ENST00000593223 IGLV1-50A0A075B6I6 118 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 IGHV3OR15-7A0A075B7D8 119 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 IGKV6-21A0A0C4DH24 114 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 H3BMG7 143 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 H3BQF6 201 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 PLA2G10O15496 165 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 SLC25A14O95258 325 aaPredicted RBP3.15□□□□□ -1.91
SMAD4-216ENST00000593223 IGKV3-11P04433 115 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 ZNF823P16415 610 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 HMGA1P17096 107 aaKnown RBP3.15□□□□□ -1.91
SMAD4-216ENST00000593223 S100A2P29034 98 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 TGFBR1P36897 503 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 ZNF80P51504 273 aaPredicted RBP3.15□□□□□ -1.91
SMAD4-216ENST00000593223 FOXA3P55318 350 aaPredicted RBP3.15□□□□□ -1.91
SMAD4-216ENST00000593223 TAS2R45P59539 299 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 MPV17L2Q567V2 206 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 LAIR2Q6ISS4 152 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 CEMP1Q6PRD7 247 aaPredicted RBP3.15□□□□□ -1.91
SMAD4-216ENST00000593223 LCN15Q6UWW0 184 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 AMTNQ6UX39 209 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 ORMDL3Q8N138 153 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 C3orf22Q8N5N4 141 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 ZNF645Q8N7E2 425 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 FER1L6-AS1Q8NA97 138 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 C20orf203Q8NBC4 194 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 PLPP5Q8NEB5 264 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 OR5C1Q8NGR4 320 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 LCN9Q8WX39 176 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 HDHD3Q9BSH5 251 aaPredicted RBP3.15□□□□□ -1.91
SMAD4-216ENST00000593223 SND1-IT1Q9HBX3 110 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 CA10Q9NS85 328 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 DEC1Q9P2X7 70 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 MARCOQ9UEW3 520 aaPredicted RBP3.15□□□□□ -1.91
SMAD4-216ENST00000593223 AKAP6Q13023 2319 aa3.15□□□□□ -1.91
SMAD4-216ENST00000593223 CHD3Q12873 2000 aaKnown RBP3.14□□□□□ -1.91
SMAD4-216ENST00000593223 TENM3Q9P273 2699 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 TRAV27A0A087WT01 109 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 TRAV13-1A0A0B4J241 112 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 A0A0G2JMM0 328 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 A0A1W2PPB8 328 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 OR2T8A6NH00 312 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 KIR3DP1A8MWS1 328 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 A8MWV9 139 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 FNDC10F2Z333 226 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 I3L521 148 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 M0R378 163 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 NDUFB3O43676 98 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 FABP2P12104 132 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 CRISP2P16562 243 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 ZNF32P17041 273 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 S100A4P26447 101 aaKnown RBP3.14□□□□□ -1.91
SMAD4-216ENST00000593223 S100A10P60903 97 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 YPEL3P61236 119 aaPredicted RBP3.14□□□□□ -1.91
SMAD4-216ENST00000593223 LCE3AQ5TA76 89 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 MORN3Q6PF18 240 aaPredicted RBP3.14□□□□□ -1.91
SMAD4-216ENST00000593223 PHF5AQ7RTV0 110 aaKnown RBP3.14□□□□□ -1.91
SMAD4-216ENST00000593223 RPS19BP1Q86WX3 136 aaKnown RBP3.14□□□□□ -1.91
SMAD4-216ENST00000593223 C2orf15Q8WU43 125 aaKnown RBP3.14□□□□□ -1.91
SMAD4-216ENST00000593223 YPEL2Q96QA6 119 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 FUT9Q9Y231 359 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 DENND4CQ5VZ89 1909 aa3.14□□□□□ -1.91
SMAD4-216ENST00000593223 LRP4O75096 1905 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 MYO7BQ6PIF6 2116 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 A0A087X0T9 212 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 IGHV3-72A0A0B4J1Y9 119 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 IGHV3-66A0A0C4DH42 116 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 C7orf71A4D174 169 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 ZNF727A8MUV8 499 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 INS-IGF2F8WCM5 200 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 NAPSAO96009 420 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 SOD1P00441 154 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 IGKV1-5P01602 117 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 PRB2P02812 416 aaPredicted RBP3.13□□□□□ -1.91
SMAD4-216ENST00000593223 PRM2P04554 102 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 SEC11BP0C7V7 166 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 CCL4P13236 92 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 SRP14P37108 136 aaKnown RBP3.13□□□□□ -1.91
SMAD4-216ENST00000593223 TMEM258P61165 79 aa3.13□□□□□ -1.91
SMAD4-216ENST00000593223 EIF5AP63241 154 aaKnown RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms