RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PLP1P60201 277 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 RIGQ13278 110 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 RPL39P5Q59GN2 51 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 ZNF841Q6ZN19 808 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 Q6ZR03 302 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 SLC25A48Q6ZT89 311 aaKnown RBP3.24□□□□□ -1.89
LIG3-211ENST00000588713 LINC00173Q6ZV60 143 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 TMEM86BQ8N661 226 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 TPRX1Q8N7U7 411 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 MAPKAPK5-AS1Q8N8E1 139 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 C1orf162Q8NEQ5 155 aaPredicted RBP3.24□□□□□ -1.89
LIG3-211ENST00000588713 OR10X1Q8NGY0 326 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 OR4A5Q8NH83 315 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 C8orf46Q8TAG6 207 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 PRR25Q96S07 402 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 ATP6V0BQ99437 205 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 CALYQ9NYX4 217 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 HIGD1BQ9P298 99 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 EPDR1Q9UM22 224 aa3.24□□□□□ -1.89
LIG3-211ENST00000588713 PPIAL4EA0A075B759 164 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 PPIAL4CA0A0B4J2A2 164 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 A0A1B0GUT8 65 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 HBDP02042 147 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 TCRAP04437 139 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 SLC25A5P05141 298 aaKnown RBP3.23□□□□□ -1.89
LIG3-211ENST00000588713 PPIAL4FP0DN26 164 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 PYYP10082 97 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 PF4V1P10720 104 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 CD28P10747 220 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 GP9P14770 177 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 S100A7P31151 101 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 CFHR2P36980 270 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 FOXA3P55318 350 aaPredicted RBP3.23□□□□□ -1.89
LIG3-211ENST00000588713 EDDM3AQ14507 147 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 MBNL2Q5VZF2 373 aaKnown RBP3.23□□□□□ -1.89
LIG3-211ENST00000588713 FAM53AQ6NSI3 398 aaPredicted RBP3.23□□□□□ -1.89
LIG3-211ENST00000588713 ZNF493Q6ZR52 646 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 C1orf122Q6ZSJ8 110 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 SBSPONQ8IVN8 264 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 C11orf53Q8IXP5 236 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 VKORC1L1Q8N0U8 176 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 MTURNQ8N3F0 131 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 CD177Q8N6Q3 437 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 TMEM75Q8N9X5 138 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 WFDC9Q8NEX5 89 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 OR9G1Q8NH87 305 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 OSR1Q8TAX0 266 aaPredicted RBP3.23□□□□□ -1.89
LIG3-211ENST00000588713 ZNF502Q8TBZ5 544 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 KLF14Q8TD94 323 aaPredicted RBP3.23□□□□□ -1.89
LIG3-211ENST00000588713 GTSF1Q8WW33 167 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 ITLN1Q8WWA0 313 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 DAZAP1Q96EP5 407 aaKnown RBP3.23□□□□□ -1.89
LIG3-211ENST00000588713 C20orf173Q96LM9 149 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 FAM234AQ9H0X4 552 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 FNDC4Q9H6D8 234 aaPredicted RBP3.23□□□□□ -1.89
LIG3-211ENST00000588713 ZMAT4Q9H898 229 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 LINC00574Q9H8X3 128 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 OBP2BQ9NPH6 170 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 RABAC1Q9UI14 185 aa3.23□□□□□ -1.89
LIG3-211ENST00000588713 DMBT1Q9UGM3 2413 aaPredicted RBP3.23□□□□□ -1.89
LIG3-211ENST00000588713 IGKV1D-17A0A075B6S4 117 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 IGKV1D-37A0A075B6S9 117 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 KBTBD11-OT1A0A1B0GTJ5 212 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 TEX48A0A1B0GUV7 120 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 F8W1H4 67 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 LINC01619G3V211 115 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 TIMM8AO60220 97 aaPredicted RBP3.22□□□□□ -1.89
LIG3-211ENST00000588713 MOSP00540 346 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 IGKV3-15P01624 115 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 IGHV3-7P01780 117 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 SAA1P0DJI8 122 aaPredicted RBP3.22□□□□□ -1.89
LIG3-211ENST00000588713 CGB3P0DN86 165 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 CGB7P0DN87 165 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 PRDX2P32119 198 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 MPV17P39210 176 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 SUB1P53999 127 aaKnown RBP eCLIP3.22□□□□□ -1.89
LIG3-211ENST00000588713 LINC00205P59089 165 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 GNG5P63218 68 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 ERHP84090 104 aaKnown RBP3.22□□□□□ -1.89
LIG3-211ENST00000588713 TAL2Q16559 108 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 C17orf58Q2M2W7 97 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 MORN5Q5VZ52 161 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 PVRIGQ6DKI7 326 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 ZNF826PQ6ZT77 177 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 ZNF833PQ6ZTB9 187 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 NDUFA11Q86Y39 141 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 ATP6V0E2Q8NHE4 81 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 MRAP2Q96G30 205 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 ZNF414Q96IQ9 312 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 PGLYRP4Q96LB8 373 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 TRGV9Q99603 122 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 SIGMAR1Q99720 223 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 CITED2Q99967 270 aaPredicted RBP3.22□□□□□ -1.89
LIG3-211ENST00000588713 HINT2Q9BX68 163 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 KRTAP9-3Q9BYQ3 159 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 EDA2RQ9HAV5 297 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 OTORQ9NRC9 128 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 NDUFA4L2Q9NRX3 87 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 THYN1Q9P016 225 aa3.22□□□□□ -1.89
LIG3-211ENST00000588713 TMEM14CQ9P0S9 112 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms