RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 GSN-AS1Q9NRJ2 163 aa7.72□□□□□ -1.17
CLIP3-203ENST00000586457 NAGKQ9UJ70 344 aa7.72□□□□□ -1.17
CLIP3-203ENST00000586457 TRGV1A0A0A0MS02 117 aa7.71□□□□□ -1.18
CLIP3-203ENST00000586457 CTXND1A0A1B0GTU2 59 aa7.71□□□□□ -1.18
CLIP3-203ENST00000586457 ZNF324O75467 553 aaPredicted RBP7.71□□□□□ -1.18
CLIP3-203ENST00000586457 PPT1P50897 306 aa7.71□□□□□ -1.18
CLIP3-203ENST00000586457 DAZ2Q13117 558 aaKnown RBP7.71□□□□□ -1.18
CLIP3-203ENST00000586457 ANXA2RQ3ZCQ2 193 aa7.71□□□□□ -1.18
CLIP3-203ENST00000586457 MUC21Q5SSG8 566 aa7.71□□□□□ -1.18
CLIP3-203ENST00000586457 C5orf17Q8NAS9 161 aa7.71□□□□□ -1.18
CLIP3-203ENST00000586457 LINC00467Q9BRT7 94 aa7.71□□□□□ -1.18
CLIP3-203ENST00000586457 NKX6-2Q9C056 277 aaPredicted RBP7.71□□□□□ -1.18
CLIP3-203ENST00000586457 PLAC8L1A1L4L8 177 aa7.7□□□□□ -1.18
CLIP3-203ENST00000586457 FBLL1A6NHQ2 334 aaKnown RBP7.7□□□□□ -1.18
CLIP3-203ENST00000586457 HMSDA8MTL9 139 aa7.7□□□□□ -1.18
CLIP3-203ENST00000586457 CCL18P55774 89 aa7.7□□□□□ -1.18
CLIP3-203ENST00000586457 ZNF415Q09FC8 603 aa7.7□□□□□ -1.18
CLIP3-203ENST00000586457 ZNF345Q14585 488 aa7.7□□□□□ -1.18
CLIP3-203ENST00000586457 SSX7Q7RTT5 188 aa7.7□□□□□ -1.18
CLIP3-203ENST00000586457 KCNRGQ8N5I3 272 aa7.7□□□□□ -1.18
CLIP3-203ENST00000586457 ZFAND2AQ8N6M9 145 aa7.7□□□□□ -1.18
CLIP3-203ENST00000586457 ZNF471Q9BX82 626 aaPredicted RBP7.7□□□□□ -1.18
CLIP3-203ENST00000586457 TRGV11A0A075B6L2 103 aa7.69□□□□□ -1.18
CLIP3-203ENST00000586457 TRAV21A0A0B4J279 112 aa7.69□□□□□ -1.18
CLIP3-203ENST00000586457 A0A1W2PRE2 83 aa7.69□□□□□ -1.18
CLIP3-203ENST00000586457 F6UZH7 168 aa7.69□□□□□ -1.18
CLIP3-203ENST00000586457 TCRAP04437 139 aa7.69□□□□□ -1.18
CLIP3-203ENST00000586457 UBE2G2P60604 165 aa7.69□□□□□ -1.18
CLIP3-203ENST00000586457 GNG5P63218 68 aa7.69□□□□□ -1.18
CLIP3-203ENST00000586457 RNF212Q495C1 297 aa7.69□□□□□ -1.18
CLIP3-203ENST00000586457 IBA57Q5T440 356 aaKnown RBP7.69□□□□□ -1.18
CLIP3-203ENST00000586457 EPDR1Q9UM22 224 aa7.69□□□□□ -1.18
CLIP3-203ENST00000586457 STARD9Q9P2P6 4700 aa7.69□□□□□ -1.18
CLIP3-203ENST00000586457 MAP1LC3B2A6NCE7 125 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 UMAD1C9J7I0 102 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 FGF8P55075 233 aaPredicted RBP7.68□□□□□ -1.18
CLIP3-203ENST00000586457 TCL1AP56279 114 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 TMEM183BQ1AE95 376 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 LGALS9BQ3B8N2 356 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 SAPCD1Q5SSQ6 148 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 PRR9Q5T870 116 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 EIF5AL1Q6IS14 154 aaKnown RBP7.68□□□□□ -1.18
CLIP3-203ENST00000586457 Q6ZTI0 123 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 PRNTQ86SH4 94 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 TMEM183AQ8IXX5 376 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 CYB561D1Q8N8Q1 229 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 KCNS1Q96KK3 526 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 SGK494Q96LW2 274 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 MAP1LC3BQ9GZQ8 125 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 SDF2L1Q9HCN8 221 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 PSG8Q9UQ74 426 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 KLF12Q9Y4X4 402 aa7.68□□□□□ -1.18
CLIP3-203ENST00000586457 TRAV26-1A0A087WT03 109 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 TRAV8-1A0A0A6YYK1 113 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 A0A0J9YY99 117 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 M0R2N4 97 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 BCL2L11O43521 198 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 SEC11BP0C7V7 166 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 FLI1Q01543 452 aaPredicted RBP7.67□□□□□ -1.18
CLIP3-203ENST00000586457 SMUG1Q53HV7 270 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 CST9LP1Q5W188 147 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 Q6AWC8 147 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 SUN5Q8TC36 379 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 SFT2D1Q8WV19 159 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 SPXQ9BT56 116 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 TMPRSS5Q9H3S3 457 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 CYTL1Q9NRR1 136 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 TP53TG3Q9ULZ0 132 aa7.67□□□□□ -1.18
CLIP3-203ENST00000586457 G3V3Q6 166 aa7.66□□□□□ -1.18
CLIP3-203ENST00000586457 TEX46H3BTG2 121 aa7.66□□□□□ -1.18
CLIP3-203ENST00000586457 SPINK4O60575 86 aa7.66□□□□□ -1.18
CLIP3-203ENST00000586457 TPT1P13693 172 aaKnown RBP7.66□□□□□ -1.18
CLIP3-203ENST00000586457 FAM3BP58499 235 aaPredicted RBP7.66□□□□□ -1.18
CLIP3-203ENST00000586457 UBE2G1P62253 170 aa7.66□□□□□ -1.18
CLIP3-203ENST00000586457 SLAQ13239 276 aa7.66□□□□□ -1.18
CLIP3-203ENST00000586457 TMUB2Q71RG4 321 aa7.66□□□□□ -1.18
CLIP3-203ENST00000586457 C11orf72Q8NBR9 251 aa7.66□□□□□ -1.18
CLIP3-203ENST00000586457 FAM213BQ8TBF2 198 aa7.66□□□□□ -1.18
CLIP3-203ENST00000586457 HIST1H2BAQ96A08 127 aa7.66□□□□□ -1.18
CLIP3-203ENST00000586457 MRPL16Q9NX20 251 aaKnown RBP7.66□□□□□ -1.18
CLIP3-203ENST00000586457 LYSTQ99698 3801 aa7.66□□□□□ -1.18
CLIP3-203ENST00000586457 DYNC2H1Q8NCM8 4307 aaKnown RBP7.65□□□□□ -1.18
CLIP3-203ENST00000586457 IGLV2-18A0A075B6J9 118 aa7.65□□□□□ -1.18
CLIP3-203ENST00000586457 TRGV4A0A0C4DH28 118 aa7.65□□□□□ -1.18
CLIP3-203ENST00000586457 GGTLC3B5MD39 225 aa7.65□□□□□ -1.18
CLIP3-203ENST00000586457 GCGP01275 180 aa7.65□□□□□ -1.18
CLIP3-203ENST00000586457 IGHV3-53P01767 116 aa7.65□□□□□ -1.18
CLIP3-203ENST00000586457 ZNF726P1Q15940 193 aa7.65□□□□□ -1.18
CLIP3-203ENST00000586457 SOHLH1Q5JUK2 328 aa7.65□□□□□ -1.18
CLIP3-203ENST00000586457 DPPA3Q6W0C5 159 aa7.65□□□□□ -1.18
CLIP3-203ENST00000586457 Q6ZQT7 251 aa7.65□□□□□ -1.18
CLIP3-203ENST00000586457 LINC00612Q8N6U2 182 aa7.65□□□□□ -1.18
CLIP3-203ENST00000586457 TMEM75Q8N9X5 138 aa7.65□□□□□ -1.18
CLIP3-203ENST00000586457 OR11H4Q8NGC9 324 aa7.65□□□□□ -1.18
CLIP3-203ENST00000586457 A0A1B0GV50 99 aa7.64□□□□□ -1.19
CLIP3-203ENST00000586457 PEX7O00628 323 aa7.64□□□□□ -1.19
CLIP3-203ENST00000586457 PAX4O43316 350 aa7.64□□□□□ -1.19
CLIP3-203ENST00000586457 GNRH2O43555 120 aa7.64□□□□□ -1.19
CLIP3-203ENST00000586457 H2AFB1P0C5Y9 115 aa7.64□□□□□ -1.19
CLIP3-203ENST00000586457 PCNPQ8WW12 178 aaKnown RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms