RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 C12orf45Q8N5I9 185 aaPredicted RBP8.41□□□□□ -1.06
SS18-219ENST00000581570 ZNF492Q9P255 531 aa8.41□□□□□ -1.06
SS18-219ENST00000581570 IGKV2-40A0A087WW87 121 aaPredicted RBP8.4□□□□□ -1.06
SS18-219ENST00000581570 TRAV4A0A0B4J268 109 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 FABP12A6NFH5 140 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 LECT2O14960 151 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 SCGB1D2O95969 90 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 IGKV2D-40P01614 121 aaPredicted RBP8.4□□□□□ -1.06
SS18-219ENST00000581570 AP3S2P59780 193 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 RAB31Q13636 194 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 ZNF846Q147U1 533 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 SPCS2Q15005 226 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 NRARPQ7Z6K4 114 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 OR4C5Q8NGB2 326 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 PFDN5Q99471 154 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 SOSTQ9BQB4 213 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 CHAC1Q9BUX1 264 aa8.4□□□□□ -1.06
SS18-219ENST00000581570 A6NHS1 94 aa8.39□□□□□ -1.07
SS18-219ENST00000581570 PFN1P07737 140 aaKnown RBP8.39□□□□□ -1.07
SS18-219ENST00000581570 ASAH1Q13510 395 aa8.39□□□□□ -1.07
SS18-219ENST00000581570 PDE6HQ13956 83 aa8.39□□□□□ -1.07
SS18-219ENST00000581570 TOMM5Q8N4H5 51 aa8.39□□□□□ -1.07
SS18-219ENST00000581570 AAMDCQ9H7C9 122 aa8.39□□□□□ -1.07
SS18-219ENST00000581570 TMEM14CQ9P0S9 112 aa8.39□□□□□ -1.07
SS18-219ENST00000581570 IGHV3-16A0A0C4DH30 117 aa8.38□□□□□ -1.07
SS18-219ENST00000581570 C9orf170A2RU37 121 aa8.38□□□□□ -1.07
SS18-219ENST00000581570 RS1O15537 224 aa8.38□□□□□ -1.07
SS18-219ENST00000581570 ZNF138P52744 262 aa8.38□□□□□ -1.07
SS18-219ENST00000581570 LAGE3Q14657 143 aa8.38□□□□□ -1.07
SS18-219ENST00000581570 TMEM183BQ1AE95 376 aa8.38□□□□□ -1.07
SS18-219ENST00000581570 FAM122CQ6P4D5 195 aa8.38□□□□□ -1.07
SS18-219ENST00000581570 TMEM183AQ8IXX5 376 aa8.38□□□□□ -1.07
SS18-219ENST00000581570 CIRBP-AS1Q8TBR5 109 aa8.38□□□□□ -1.07
SS18-219ENST00000581570 PKHD1L1Q86WI1 4243 aa8.37□□□□□ -1.07
SS18-219ENST00000581570 TRGV11A0A075B6L2 103 aa8.37□□□□□ -1.07
SS18-219ENST00000581570 TRBV7-9A0A0J9YWB2 115 aa8.37□□□□□ -1.07
SS18-219ENST00000581570 RBFOX3A6NFN3 312 aa8.37□□□□□ -1.07
SS18-219ENST00000581570 PYYP10082 97 aa8.37□□□□□ -1.07
SS18-219ENST00000581570 GATA1P15976 413 aaPredicted RBP8.37□□□□□ -1.07
SS18-219ENST00000581570 UBE2MP61081 183 aaKnown RBP8.37□□□□□ -1.07
SS18-219ENST00000581570 IAH1Q2TAA2 248 aaPredicted RBP8.37□□□□□ -1.07
SS18-219ENST00000581570 ACOT6Q3I5F7 207 aaPredicted RBP8.37□□□□□ -1.07
SS18-219ENST00000581570 LELP1Q5T871 98 aa8.37□□□□□ -1.07
SS18-219ENST00000581570 TRIM63Q969Q1 353 aa8.37□□□□□ -1.07
SS18-219ENST00000581570 TRAV8-3A0A0A6YYJ7 113 aa8.36□□□□□ -1.07
SS18-219ENST00000581570 C7orf66A4D0T2 115 aa8.36□□□□□ -1.07
SS18-219ENST00000581570 IGLV2-8P01709 118 aa8.36□□□□□ -1.07
SS18-219ENST00000581570 ZNF266Q14584 549 aa8.36□□□□□ -1.07
SS18-219ENST00000581570 FAM159AQ6UWV7 190 aa8.36□□□□□ -1.07
SS18-219ENST00000581570 Q8TAT8 98 aa8.36□□□□□ -1.07
SS18-219ENST00000581570 BAALCQ8WXS3 180 aa8.36□□□□□ -1.07
SS18-219ENST00000581570 C20orf85Q9H1P6 137 aa8.36□□□□□ -1.07
SS18-219ENST00000581570 GPN1Q9HCN4 374 aaPredicted RBP8.36□□□□□ -1.07
SS18-219ENST00000581570 SLC39A9Q9NUM3 307 aa8.36□□□□□ -1.07
SS18-219ENST00000581570 GSKIPQ9P0R6 139 aa8.36□□□□□ -1.07
SS18-219ENST00000581570 M0R2P5 195 aa8.35□□□□□ -1.07
SS18-219ENST00000581570 RPL29P47914 159 aaKnown RBP8.35□□□□□ -1.07
SS18-219ENST00000581570 BAK1Q16611 211 aa8.35□□□□□ -1.07
SS18-219ENST00000581570 PYDC2Q56P42 97 aa8.35□□□□□ -1.07
SS18-219ENST00000581570 DYNC2LI1Q8TCX1 351 aa8.35□□□□□ -1.07
SS18-219ENST00000581570 WDR83OSQ9Y284 106 aa8.35□□□□□ -1.07
SS18-219ENST00000581570 L7N2F9 121 aa8.34□□□□□ -1.07
SS18-219ENST00000581570 MBPP02686 304 aaPredicted RBP8.34□□□□□ -1.07
SS18-219ENST00000581570 SMIM18P0DKX4 95 aa8.34□□□□□ -1.07
SS18-219ENST00000581570 BCAP31P51572 246 aa8.34□□□□□ -1.07
SS18-219ENST00000581570 RPL37AP61513 92 aaKnown RBP8.34□□□□□ -1.07
SS18-219ENST00000581570 VAMP2P63027 116 aa8.34□□□□□ -1.07
SS18-219ENST00000581570 Q6AWC8 147 aa8.34□□□□□ -1.07
SS18-219ENST00000581570 SLC25A29Q8N8R3 303 aa8.34□□□□□ -1.07
SS18-219ENST00000581570 Q8N976 141 aa8.34□□□□□ -1.07
SS18-219ENST00000581570 DEDD2Q8WXF8 326 aa8.34□□□□□ -1.07
SS18-219ENST00000581570 PRADC1Q9BSG0 188 aa8.34□□□□□ -1.07
SS18-219ENST00000581570 UQCC1Q9NVA1 299 aa8.34□□□□□ -1.07
SS18-219ENST00000581570 FBLL1A6NHQ2 334 aaKnown RBP8.33□□□□□ -1.08
SS18-219ENST00000581570 GNRH2O43555 120 aa8.33□□□□□ -1.08
SS18-219ENST00000581570 CST7O76096 145 aa8.33□□□□□ -1.08
SS18-219ENST00000581570 NBEAP1P0C6P0 100 aa8.33□□□□□ -1.08
SS18-219ENST00000581570 HNRNPA3P51991 378 aaKnown RBP8.33□□□□□ -1.08
SS18-219ENST00000581570 BAXQ07812 192 aa8.33□□□□□ -1.08
SS18-219ENST00000581570 Q8N3U1 123 aa8.33□□□□□ -1.08
SS18-219ENST00000581570 DAZAP1Q96EP5 407 aaKnown RBP8.33□□□□□ -1.08
SS18-219ENST00000581570 GTSF1LQ9H1H1 148 aa8.33□□□□□ -1.08
SS18-219ENST00000581570 NAGKQ9UJ70 344 aa8.33□□□□□ -1.08
SS18-219ENST00000581570 COX11Q9Y6N1 276 aa8.33□□□□□ -1.08
SS18-219ENST00000581570 RNF222A6NCQ9 220 aa8.32□□□□□ -1.08
SS18-219ENST00000581570 MT1HL1P0DM35 61 aa8.32□□□□□ -1.08
SS18-219ENST00000581570 RHOHQ15669 191 aa8.32□□□□□ -1.08
SS18-219ENST00000581570 TOR2AQ5JU69 321 aa8.32□□□□□ -1.08
SS18-219ENST00000581570 DAZ4Q86SG3 579 aaKnown RBP8.32□□□□□ -1.08
SS18-219ENST00000581570 ATP6V0E2Q8NHE4 81 aa8.32□□□□□ -1.08
SS18-219ENST00000581570 SLC25A2Q9BXI2 301 aa8.32□□□□□ -1.08
SS18-219ENST00000581570 DAZ3Q9NR90 486 aaKnown RBP8.32□□□□□ -1.08
SS18-219ENST00000581570 FLVCR2Q9UPI3 526 aa8.32□□□□□ -1.08
SS18-219ENST00000581570 UBE2L5PA0A1B0GUS4 154 aa8.31□□□□□ -1.08
SS18-219ENST00000581570 TRBV6-4A0A1B0GX49 114 aa8.31□□□□□ -1.08
SS18-219ENST00000581570 RBAKDNA6NC62 111 aa8.31□□□□□ -1.08
SS18-219ENST00000581570 FAM24AA6NFZ4 105 aa8.31□□□□□ -1.08
SS18-219ENST00000581570 GGTLC3B5MD39 225 aa8.31□□□□□ -1.08
SS18-219ENST00000581570 IGLV2-11P01706 119 aa8.31□□□□□ -1.08
SS18-219ENST00000581570 CSN1S1P47710 185 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms