RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 SRD5A3Q9H8P0 318 aa11.86□□□□□ -0.51
SS18-211ENST00000578954 A8MZ25 164 aa11.85□□□□□ -0.51
SS18-211ENST00000578954 APOC3P02656 99 aa11.85□□□□□ -0.51
SS18-211ENST00000578954 AMBPP02760 352 aa11.85□□□□□ -0.51
SS18-211ENST00000578954 S100A1P23297 94 aa11.85□□□□□ -0.51
SS18-211ENST00000578954 CRIP1P50238 77 aa11.85□□□□□ -0.51
SS18-211ENST00000578954 ZNF80P51504 273 aaPredicted RBP11.85□□□□□ -0.51
SS18-211ENST00000578954 ADIRFQ15847 76 aa11.85□□□□□ -0.51
SS18-211ENST00000578954 Q6AWC8 147 aa11.85□□□□□ -0.51
SS18-211ENST00000578954 MORN3Q6PF18 240 aaPredicted RBP11.85□□□□□ -0.51
SS18-211ENST00000578954 FAM231DQ6ZW35 169 aa11.85□□□□□ -0.51
SS18-211ENST00000578954 SVBPQ8N300 66 aa11.85□□□□□ -0.51
SS18-211ENST00000578954 AURKAIP1Q9NWT8 199 aaPredicted RBP11.85□□□□□ -0.51
SS18-211ENST00000578954 C19orf71A6NCJ1 209 aa11.84□□□□□ -0.51
SS18-211ENST00000578954 CRXO43186 299 aaPredicted RBP11.84□□□□□ -0.51
SS18-211ENST00000578954 MGST1P10620 155 aaKnown RBP11.84□□□□□ -0.51
SS18-211ENST00000578954 OR5I1Q13606 314 aa11.84□□□□□ -0.51
SS18-211ENST00000578954 SPINK13Q1W4C9 94 aa11.84□□□□□ -0.51
SS18-211ENST00000578954 LINC00322Q6ZN03 302 aaPredicted RBP11.84□□□□□ -0.51
SS18-211ENST00000578954 C7orf71A4D174 169 aa11.83□□□□□ -0.52
SS18-211ENST00000578954 B4DEV8 164 aa11.83□□□□□ -0.52
SS18-211ENST00000578954 M0R2Z0 102 aa11.83□□□□□ -0.52
SS18-211ENST00000578954 GPX1P07203 203 aa11.83□□□□□ -0.52
SS18-211ENST00000578954 PFN1P07737 140 aaKnown RBP11.83□□□□□ -0.52
SS18-211ENST00000578954 NUTF2P61970 127 aaKnown RBP11.83□□□□□ -0.52
SS18-211ENST00000578954 KIR3DS1Q14943 382 aa11.83□□□□□ -0.52
SS18-211ENST00000578954 FAM162BQ5T6X4 162 aa11.83□□□□□ -0.52
SS18-211ENST00000578954 GFI1BQ5VTD9 330 aa11.83□□□□□ -0.52
SS18-211ENST00000578954 CLRN3Q8NCR9 226 aa11.83□□□□□ -0.52
SS18-211ENST00000578954 OSTCQ9NRP0 149 aa11.83□□□□□ -0.52
SS18-211ENST00000578954 FABP5P3A8MUU1 101 aa11.82□□□□□ -0.52
SS18-211ENST00000578954 SH2D1AO60880 128 aa11.82□□□□□ -0.52
SS18-211ENST00000578954 SNAPINO95295 136 aa11.82□□□□□ -0.52
SS18-211ENST00000578954 GIG44P09565 113 aaPredicted RBP11.82□□□□□ -0.52
SS18-211ENST00000578954 BTN1A1Q13410 526 aa11.82□□□□□ -0.52
SS18-211ENST00000578954 C20orf144Q9BQM9 153 aa11.82□□□□□ -0.52
SS18-211ENST00000578954 NOTCH1P46531 2555 aa11.82□□□□□ -0.52
SS18-211ENST00000578954 NBEAL1Q6ZS30 2694 aa11.81□□□□□ -0.52
SS18-211ENST00000578954 LOC102724200A0A096LPH7 203 aaPredicted RBP11.81□□□□□ -0.52
SS18-211ENST00000578954 TRAV21A0A0B4J279 112 aa11.81□□□□□ -0.52
SS18-211ENST00000578954 KIR2DL5BA0A0G2JN68 375 aa11.81□□□□□ -0.52
SS18-211ENST00000578954 KIR2DL5BA0A0G2JPC4 375 aa11.81□□□□□ -0.52
SS18-211ENST00000578954 M0R036 132 aa11.81□□□□□ -0.52
SS18-211ENST00000578954 ZNF324O75467 553 aaPredicted RBP11.81□□□□□ -0.52
SS18-211ENST00000578954 IGHV4-30-4P0DP06 118 aa11.81□□□□□ -0.52
SS18-211ENST00000578954 RPL35AP18077 110 aaKnown RBP11.81□□□□□ -0.52
SS18-211ENST00000578954 RHEBQ15382 184 aa11.81□□□□□ -0.52
SS18-211ENST00000578954 PRR27Q6MZM9 219 aa11.81□□□□□ -0.52
SS18-211ENST00000578954 KIR2DL5AQ8N109 375 aa11.81□□□□□ -0.52
SS18-211ENST00000578954 KIR2DL5BQ8NHK3 375 aa11.81□□□□□ -0.52
SS18-211ENST00000578954 SFRP2Q96HF1 295 aa11.81□□□□□ -0.52
SS18-211ENST00000578954 TRAV12-2A0A075B6T6 113 aa11.8□□□□□ -0.52
SS18-211ENST00000578954 RNASE4P34096 147 aaKnown RBP11.8□□□□□ -0.52
SS18-211ENST00000578954 FXYD7P58549 80 aa11.8□□□□□ -0.52
SS18-211ENST00000578954 IBA57Q5T440 356 aaKnown RBP11.8□□□□□ -0.52
SS18-211ENST00000578954 NUDT10Q8NFP7 164 aa11.8□□□□□ -0.52
SS18-211ENST00000578954 NUDT11Q96G61 164 aa11.8□□□□□ -0.52
SS18-211ENST00000578954 RNASE7Q9H1E1 156 aaKnown RBP11.8□□□□□ -0.52
SS18-211ENST00000578954 A0A087WWC5 75 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 C7orf77A4D0Y5 90 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 J3KRW8 73 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 INSP01308 110 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 RBMY1A1P0DJD3 496 aaKnown RBP11.79□□□□□ -0.52
SS18-211ENST00000578954 RBMY1CP0DJD4 496 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 ERVFC1-1P60608 527 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 RBMY1FQ15415 496 aaKnown RBP11.79□□□□□ -0.52
SS18-211ENST00000578954 RNF212Q495C1 297 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 LINC01559Q495D7 138 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 OR10G8Q8NGN5 311 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 C1QTNF4Q9BXJ3 329 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 CSTL1Q9H114 145 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 TUBA4BQ9H853 241 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 C11orf21Q9P2W6 132 aa11.79□□□□□ -0.52
SS18-211ENST00000578954 TRAV12-3A0A0B4J271 114 aa11.78□□□□□ -0.52
SS18-211ENST00000578954 PPP1R2P9O14990 202 aa11.78□□□□□ -0.52
SS18-211ENST00000578954 P01737 135 aa11.78□□□□□ -0.52
SS18-211ENST00000578954 MT-ND4LP03901 98 aa11.78□□□□□ -0.52
SS18-211ENST00000578954 CT83Q5H943 113 aa11.78□□□□□ -0.52
SS18-211ENST00000578954 Q6ZQT7 251 aa11.78□□□□□ -0.52
SS18-211ENST00000578954 C15orf54Q8N8G6 183 aa11.78□□□□□ -0.52
SS18-211ENST00000578954 CSNK1G2-AS1Q8NCQ2 148 aa11.78□□□□□ -0.52
SS18-211ENST00000578954 ANAPC16Q96DE5 110 aa11.78□□□□□ -0.52
SS18-211ENST00000578954 DAZAP1Q96EP5 407 aaKnown RBP11.78□□□□□ -0.52
SS18-211ENST00000578954 CTDSP1Q9GZU7 261 aa11.78□□□□□ -0.52
SS18-211ENST00000578954 XCL2Q9UBD3 114 aa11.78□□□□□ -0.52
SS18-211ENST00000578954 V9GYV3 84 aa11.78□□□□□ -0.52
SS18-211ENST00000578954 CXCL1P09341 107 aa11.77□□□□□ -0.53
SS18-211ENST00000578954 APOC4P55056 127 aa11.77□□□□□ -0.53
SS18-211ENST00000578954 TDRG1Q3Y452 100 aa11.77□□□□□ -0.53
SS18-211ENST00000578954 LINC00467Q9BRT7 94 aa11.77□□□□□ -0.53
SS18-211ENST00000578954 RPP21Q9H633 154 aaKnown RBP11.77□□□□□ -0.53
SS18-211ENST00000578954 TMEM242Q9NWH2 141 aa11.77□□□□□ -0.53
SS18-211ENST00000578954 IGKV3D-20A0A0C4DH25 116 aa11.76□□□□□ -0.53
SS18-211ENST00000578954 K7EIL1 84 aa11.76□□□□□ -0.53
SS18-211ENST00000578954 UBE2CO00762 179 aa11.76□□□□□ -0.53
SS18-211ENST00000578954 GATCO43716 136 aaKnown RBP11.76□□□□□ -0.53
SS18-211ENST00000578954 CA1P00915 261 aaPredicted RBP11.76□□□□□ -0.53
SS18-211ENST00000578954 ATRAIDQ6UW56 229 aa11.76□□□□□ -0.53
SS18-211ENST00000578954 ZNF575Q86XF7 245 aa11.76□□□□□ -0.53
SS18-211ENST00000578954 C1orf158Q8N1D5 194 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms