RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 ZFAND2AQ8N6M9 145 aa11.3□□□□□ -0.6
SS18-206ENST00000577572 OR10G8Q8NGN5 311 aa11.3□□□□□ -0.6
SS18-206ENST00000577572 IMMP2LQ96T52 175 aa11.3□□□□□ -0.6
SS18-206ENST00000577572 TRAV21A0A0B4J279 112 aa11.29□□□□□ -0.6
SS18-206ENST00000577572 KNCNA6PVL3 124 aa11.29□□□□□ -0.6
SS18-206ENST00000577572 GPX1P07203 203 aa11.29□□□□□ -0.6
SS18-206ENST00000577572 RNF212Q495C1 297 aa11.29□□□□□ -0.6
SS18-206ENST00000577572 Q6AWC8 147 aa11.29□□□□□ -0.6
SS18-206ENST00000577572 MORN3Q6PF18 240 aaPredicted RBP11.29□□□□□ -0.6
SS18-206ENST00000577572 TRPT1Q86TN4 253 aaKnown RBP11.29□□□□□ -0.6
SS18-206ENST00000577572 C20orf144Q9BQM9 153 aa11.29□□□□□ -0.6
SS18-206ENST00000577572 TUBA4BQ9H853 241 aa11.29□□□□□ -0.6
SS18-206ENST00000577572 FAM231BA6NCW3 169 aa11.28□□□□□ -0.6
SS18-206ENST00000577572 H7BYZ3 331 aa11.28□□□□□ -0.6
SS18-206ENST00000577572 P01737 135 aa11.28□□□□□ -0.6
SS18-206ENST00000577572 DEFB1P60022 68 aa11.28□□□□□ -0.6
SS18-206ENST00000577572 OR5I1Q13606 314 aa11.28□□□□□ -0.6
SS18-206ENST00000577572 NHLRC2Q8NBF2 726 aa11.28□□□□□ -0.6
SS18-206ENST00000577572 NUDT10Q8NFP7 164 aa11.28□□□□□ -0.6
SS18-206ENST00000577572 NUDT11Q96G61 164 aa11.28□□□□□ -0.6
SS18-206ENST00000577572 C8orf49Q96NF6 230 aa11.28□□□□□ -0.6
SS18-206ENST00000577572 RPS10P5Q9NQ39 176 aa11.28□□□□□ -0.6
SS18-206ENST00000577572 AURKAIP1Q9NWT8 199 aaPredicted RBP11.28□□□□□ -0.6
SS18-206ENST00000577572 VWFP04275 2813 aa11.27□□□□□ -0.6
SS18-206ENST00000577572 XKRY2A2RUG3 117 aa11.27□□□□□ -0.61
SS18-206ENST00000577572 CRIP1P50238 77 aa11.27□□□□□ -0.61
SS18-206ENST00000577572 RPS20P60866 119 aaKnown RBP11.27□□□□□ -0.61
SS18-206ENST00000577572 SMCO4Q9NRQ5 59 aa11.27□□□□□ -0.61
SS18-206ENST00000577572 GATCO43716 136 aaKnown RBP11.26□□□□□ -0.61
SS18-206ENST00000577572 SH2D1AO60880 128 aa11.26□□□□□ -0.61
SS18-206ENST00000577572 CXCL1P09341 107 aa11.26□□□□□ -0.61
SS18-206ENST00000577572 SAMD5Q5TGI4 173 aa11.26□□□□□ -0.61
SS18-206ENST00000577572 PRR27Q6MZM9 219 aa11.26□□□□□ -0.61
SS18-206ENST00000577572 Q8N1Y9 231 aa11.26□□□□□ -0.61
SS18-206ENST00000577572 C1QTNF4Q9BXJ3 329 aa11.26□□□□□ -0.61
SS18-206ENST00000577572 GFRA4Q9GZZ7 299 aa11.26□□□□□ -0.61
SS18-206ENST00000577572 RPP21Q9H633 154 aaKnown RBP11.26□□□□□ -0.61
SS18-206ENST00000577572 V9GYV3 84 aa11.26□□□□□ -0.61
SS18-206ENST00000577572 ANK2Q01484 3957 aa11.26□□□□□ -0.61
SS18-206ENST00000577572 C7orf71A4D174 169 aa11.25□□□□□ -0.61
SS18-206ENST00000577572 A8MWL6 223 aa11.25□□□□□ -0.61
SS18-206ENST00000577572 LINC01559Q495D7 138 aa11.25□□□□□ -0.61
SS18-206ENST00000577572 OXLD1Q5BKU9 147 aa11.25□□□□□ -0.61
SS18-206ENST00000577572 ATRAIDQ6UW56 229 aa11.25□□□□□ -0.61
SS18-206ENST00000577572 LINC00322Q6ZN03 302 aaPredicted RBP11.25□□□□□ -0.61
SS18-206ENST00000577572 BTF3L4Q96K17 158 aa11.25□□□□□ -0.61
SS18-206ENST00000577572 RNASE7Q9H1E1 156 aaKnown RBP11.25□□□□□ -0.61
SS18-206ENST00000577572 NOTCH3Q9UM47 2321 aa11.25□□□□□ -0.61
SS18-206ENST00000577572 TRAV9-1A0A075B6T8 112 aa11.24□□□□□ -0.61
SS18-206ENST00000577572 KIR2DL5BA0A0G2JN68 375 aa11.24□□□□□ -0.61
SS18-206ENST00000577572 KIR2DL5BA0A0G2JPC4 375 aa11.24□□□□□ -0.61
SS18-206ENST00000577572 ZNF705GA8MUZ8 300 aaPredicted RBP11.24□□□□□ -0.61
SS18-206ENST00000577572 ZNF80P51504 273 aaPredicted RBP11.24□□□□□ -0.61
SS18-206ENST00000577572 KIR2DL5AQ8N109 375 aa11.24□□□□□ -0.61
SS18-206ENST00000577572 KIR2DL5BQ8NHK3 375 aa11.24□□□□□ -0.61
SS18-206ENST00000577572 KCNS1Q96KK3 526 aa11.24□□□□□ -0.61
SS18-206ENST00000577572 SORL1Q92673 2214 aa11.24□□□□□ -0.61
SS18-206ENST00000577572 TMEM189A5PLL7 270 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 RBMY1BA6NDE4 496 aaKnown RBP11.23□□□□□ -0.61
SS18-206ENST00000577572 RBMY1EA6NEQ0 496 aaKnown RBP11.23□□□□□ -0.61
SS18-206ENST00000577572 A8MZ25 164 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 ZNF324O75467 553 aaPredicted RBP11.23□□□□□ -0.61
SS18-206ENST00000577572 IGKV3-20P01619 116 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 RBMY1DP0C7P1 496 aaKnown RBP11.23□□□□□ -0.61
SS18-206ENST00000577572 PRB4P10163 310 aaPredicted RBP11.23□□□□□ -0.61
SS18-206ENST00000577572 S100PP25815 95 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 RNASE4P34096 147 aaKnown RBP11.23□□□□□ -0.61
SS18-206ENST00000577572 FOXA3P55318 350 aaPredicted RBP11.23□□□□□ -0.61
SS18-206ENST00000577572 ZNF124Q15973 351 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 TDRG1Q3Y452 100 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 GFI1BQ5VTD9 330 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 KCNIP4Q6PIL6 250 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 TMEM256Q8N2U0 113 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 OR2D3Q8NGH3 330 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 TSKUQ8WUA8 353 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 LINC00467Q9BRT7 94 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 IL36BQ9NZH7 164 aa11.23□□□□□ -0.61
SS18-206ENST00000577572 TRRAPQ9Y4A5 3859 aa11.22□□□□□ -0.61
SS18-206ENST00000577572 INSP01308 110 aa11.22□□□□□ -0.61
SS18-206ENST00000577572 RPL19P84098 196 aaKnown RBP11.22□□□□□ -0.61
SS18-206ENST00000577572 SPINK13Q1W4C9 94 aa11.22□□□□□ -0.61
SS18-206ENST00000577572 KPRPQ5T749 579 aaPredicted RBP11.22□□□□□ -0.61
SS18-206ENST00000577572 PRR9Q5T870 116 aa11.22□□□□□ -0.61
SS18-206ENST00000577572 DEFB125Q8N687 156 aa11.22□□□□□ -0.61
SS18-206ENST00000577572 A0A1W2PPQ1 181 aa11.21□□□□□ -0.61
SS18-206ENST00000577572 SMIM27A0A1W2PRY6 76 aa11.21□□□□□ -0.61
SS18-206ENST00000577572 M0R2Z0 102 aa11.21□□□□□ -0.61
SS18-206ENST00000577572 CRXO43186 299 aaPredicted RBP11.21□□□□□ -0.61
SS18-206ENST00000577572 ORM1P02763 201 aa11.21□□□□□ -0.61
SS18-206ENST00000577572 BTN1A1Q13410 526 aa11.21□□□□□ -0.61
SS18-206ENST00000577572 DNLZQ5SXM8 178 aa11.21□□□□□ -0.61
SS18-206ENST00000577572 PYGO2Q9BRQ0 406 aa11.21□□□□□ -0.61
SS18-206ENST00000577572 SRD5A3Q9H8P0 318 aa11.21□□□□□ -0.61
SS18-206ENST00000577572 LOC102724200A0A096LPH7 203 aaPredicted RBP11.2□□□□□ -0.62
SS18-206ENST00000577572 UBE2CO00762 179 aa11.2□□□□□ -0.62
SS18-206ENST00000577572 APOC4P55056 127 aa11.2□□□□□ -0.62
SS18-206ENST00000577572 FAM159AQ6UWV7 190 aa11.2□□□□□ -0.62
SS18-206ENST00000577572 CSTL1Q9H114 145 aa11.2□□□□□ -0.62
SS18-206ENST00000577572 NAT8BQ9UHF3 227 aa11.2□□□□□ -0.62
SS18-206ENST00000577572 TRAV12-3A0A0B4J271 114 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms