RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 KCNS1Q96KK3 526 aa2.07□□□□□ -2.08
SMCHD1-202ENST00000577300 LINC01600Q96MT4 127 aa2.07□□□□□ -2.08
SMCHD1-202ENST00000577300 OR2A5Q96R48 311 aa2.07□□□□□ -2.08
SMCHD1-202ENST00000577300 FAM103A1Q9BTL3 118 aaKnown RBP2.07□□□□□ -2.08
SMCHD1-202ENST00000577300 CHAC1Q9BUX1 264 aa2.07□□□□□ -2.08
SMCHD1-202ENST00000577300 LINC00527Q9UJ94 153 aa2.07□□□□□ -2.08
SMCHD1-202ENST00000577300 HILPDAQ9Y5L2 63 aa2.07□□□□□ -2.08
SMCHD1-202ENST00000577300 ANK1P16157 1881 aa2.07□□□□□ -2.08
SMCHD1-202ENST00000577300 FER1L6Q2WGJ9 1857 aa2.07□□□□□ -2.08
SMCHD1-202ENST00000577300 HELZP42694 1942 aaKnown RBP2.07□□□□□ -2.08
SMCHD1-202ENST00000577300 LOXHD1Q8IVV2 1947 aa2.07□□□□□ -2.08
SMCHD1-202ENST00000577300 DOCK6Q96HP0 2047 aa2.07□□□□□ -2.08
SMCHD1-202ENST00000577300 KIF21BO75037 1637 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 SCN11AQ9UI33 1791 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 DOCK2Q92608 1830 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 IGHV3OR16-13A0A075B7E8 117 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 IGHV1OR21-1A0A087WYE8 117 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 TRAV8-1A0A0A6YYK1 113 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 TRAV2A0A0B4J234 112 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 IGHV3OR16-9A0A0B4J2B5 98 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 C2orf70A6NJV1 201 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 F2Z2F3 143 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 FXYD1O00168 92 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 SSSCA1O60232 199 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 CST7O76096 145 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 SLC25A14O95258 325 aaPredicted RBP2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 EFNA4P52798 201 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 NPC2P61916 151 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 CCL20P78556 96 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 NCBP2-AS2Q69YL0 99 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 RPL7L1Q6DKI1 246 aaKnown RBP2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 EBLN2Q6P2I7 272 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 Q6ZR03 302 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 MARCH3Q86UD3 253 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 BAGE3Q86Y29 109 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 BAGE2Q86Y30 109 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 GPHB5Q86YW7 130 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 OR5AS1Q8N127 324 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 SMIM4Q8WVI0 70 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 PPP1R1CQ8WVI7 109 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 MCEEQ96PE7 176 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 GABARAPL3Q9BY60 117 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 CXCL16Q9H2A7 254 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 CALYQ9NYX4 217 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 TICRRQ7Z2Z1 1910 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 SCN1AP35498 2009 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 ASXL1Q8IXJ9 1541 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 TULP4Q9NRJ4 1543 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 MAST1Q9Y2H9 1570 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 RIMBP3Q9UFD9 1639 aa2.06□□□□□ -2.08
SMCHD1-202ENST00000577300 MON2Q7Z3U7 1717 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 TUBGCP6Q96RT7 1819 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 ANKRD31Q8N7Z5 1873 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 PLXNA4Q9HCM2 1894 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 TET2Q6N021 2002 aaPredicted RBP2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 TRBV20OR9-2A0A075B6H5 130 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 TRAV9-1A0A075B6T8 112 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 TRAV17A0A0B4J275 112 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 PGPA6NDG6 321 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 A6NIN4 97 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 TMEM256-PLSCR3K7ERE1 68 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 K7ERJ3 54 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 COX7A2LO14548 114 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 NDUFB3O43676 98 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 CPSF4O95639 269 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 TRBV12-3P01733 135 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 SLC25A16P16260 332 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 LGALS3P17931 250 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 IL3RAP26951 378 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 CCL23P55773 120 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 SNRPFP62306 86 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 HIST1H4AP62805 103 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 HBBP68871 147 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 CCL8P80075 99 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 MRPS36P82909 103 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 C6orf99Q4VX62 202 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 Q6ZS49 121 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 C5orf38Q86SI9 138 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 CLDND2Q8NHS1 167 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 TSKUQ8WUA8 353 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 GEMIN6Q8WXD5 167 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 TOMM6Q96B49 74 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 C2orf50Q96LR7 162 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 PARP12Q9H0J9 701 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 LINC00474Q9P2X8 69 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 CKLFQ9UBR5 152 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 ARL2-SNX15V9GYD0 113 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 ARHGEF28Q8N1W1 1705 aaKnown RBP2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 NUP205Q92621 2012 aa2.05□□□□□ -2.08
SMCHD1-202ENST00000577300 IGKV1-27A0A075B6S5 117 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 TRAV40A0A0B4J280 105 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 IGKV1-8A0A0C4DH67 115 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 LOC389332A0A1B0GUA5 103 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 A0A1W2PQD3 144 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 IRGMA1A4Y4 181 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 VWA8A3KMH1 1905 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 ZNF736B4DX44 427 aaPredicted RBP2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 C12orf77C9JDV5 145 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 BUB1B-PAK6H3BSN5 160 aa2.04□□□□□ -2.08
SMCHD1-202ENST00000577300 UPK2O00526 184 aa2.04□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms