RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 TMEM89A2RUT3 159 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 RPLP1P05386 114 aaKnown RBP10.67□□□□□ -0.7
VPS33B-208ENST00000574755 KRTAP1-3Q8IUG1 177 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 Q8N976 141 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 C14orf144Q96I85 54 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 VAMP8Q9BV40 100 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 PPP1R14DQ9NXH3 145 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 KIR2DL5BA0A0G2JN68 375 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 KIR2DL5BA0A0G2JPC4 375 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 FAM104BQ5XKR9 115 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 PRSS57Q6UWY2 283 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 KIR2DL5AQ8N109 375 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 OR10J6PQ8NGY7 276 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 SMPXQ9UHP9 88 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 PAM16Q9Y3D7 125 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 DOPEY2Q9Y3R5 2298 aa10.67□□□□□ -0.7
VPS33B-208ENST00000574755 IGKV3D-20A0A0C4DH25 116 aa10.66□□□□□ -0.7
VPS33B-208ENST00000574755 IGHV1-24A0A0C4DH33 117 aa10.66□□□□□ -0.7
VPS33B-208ENST00000574755 K7EMT4 169 aa10.66□□□□□ -0.7
VPS33B-208ENST00000574755 EDN2P20800 178 aa10.66□□□□□ -0.7
VPS33B-208ENST00000574755 ZNF469Q96JG9 3925 aaPredicted RBP10.66□□□□□ -0.7
VPS33B-208ENST00000574755 D6R8Y8 96 aa10.66□□□□□ -0.7
VPS33B-208ENST00000574755 OVOL1O14753 267 aa10.66□□□□□ -0.7
VPS33B-208ENST00000574755 FOXE3Q13461 319 aa10.66□□□□□ -0.7
VPS33B-208ENST00000574755 ZNF702PQ9H963 129 aa10.66□□□□□ -0.7
VPS33B-208ENST00000574755 C11orf21Q9P2W6 132 aa10.66□□□□□ -0.7
VPS33B-208ENST00000574755 SRD5A1P18405 259 aa10.65□□□□□ -0.7
VPS33B-208ENST00000574755 EBLN2Q6P2I7 272 aa10.65□□□□□ -0.7
VPS33B-208ENST00000574755 REC114Q7Z4M0 266 aa10.65□□□□□ -0.7
VPS33B-208ENST00000574755 LINC00477Q96M19 166 aa10.65□□□□□ -0.7
VPS33B-208ENST00000574755 UFC1Q9Y3C8 167 aa10.65□□□□□ -0.7
VPS33B-208ENST00000574755 LENEPQ9Y5L5 61 aa10.65□□□□□ -0.7
VPS33B-208ENST00000574755 J3KRW8 73 aa10.65□□□□□ -0.71
VPS33B-208ENST00000574755 BTF3P20290 206 aaKnown RBP10.65□□□□□ -0.71
VPS33B-208ENST00000574755 DEFB1P60022 68 aa10.65□□□□□ -0.71
VPS33B-208ENST00000574755 ORMDL3Q8N138 153 aa10.65□□□□□ -0.71
VPS33B-208ENST00000574755 DUX5Q96PT3 197 aa10.65□□□□□ -0.71
VPS33B-208ENST00000574755 PSMG3-AS1Q96PY0 264 aa10.65□□□□□ -0.71
VPS33B-208ENST00000574755 NDUFAF3Q9BU61 184 aa10.65□□□□□ -0.71
VPS33B-208ENST00000574755 CNFNQ9BYD5 112 aa10.65□□□□□ -0.71
VPS33B-208ENST00000574755 MSRB1Q9NZV6 116 aa10.65□□□□□ -0.71
VPS33B-208ENST00000574755 HIST2H2BCQ6DN03 193 aa10.64□□□□□ -0.71
VPS33B-208ENST00000574755 PRSS3P2Q8NHM4 247 aa10.64□□□□□ -0.71
VPS33B-208ENST00000574755 C2orf70A6NJV1 201 aa10.63□□□□□ -0.71
VPS33B-208ENST00000574755 LEPROTL1O95214 131 aa10.63□□□□□ -0.71
VPS33B-208ENST00000574755 MRPL51Q4U2R6 128 aaKnown RBP10.63□□□□□ -0.71
VPS33B-208ENST00000574755 PRR9Q5T870 116 aa10.63□□□□□ -0.71
VPS33B-208ENST00000574755 DMRTA1Q5VZB9 504 aa10.63□□□□□ -0.71
VPS33B-208ENST00000574755 Q6ZQT7 251 aa10.63□□□□□ -0.71
VPS33B-208ENST00000574755 PRELID3AQ96N28 172 aa10.63□□□□□ -0.71
VPS33B-208ENST00000574755 TMEM191AQ9H0A3 160 aa10.63□□□□□ -0.71
VPS33B-208ENST00000574755 AP5S1Q9NUS5 200 aa10.63□□□□□ -0.71
VPS33B-208ENST00000574755 F6UB75 175 aa10.63□□□□□ -0.71
VPS33B-208ENST00000574755 ELANEP08246 267 aa10.63□□□□□ -0.71
VPS33B-208ENST00000574755 ITPR3Q14573 2671 aa10.63□□□□□ -0.71
VPS33B-208ENST00000574755 RAB4AP20338 218 aa10.62□□□□□ -0.71
VPS33B-208ENST00000574755 FA2HQ7L5A8 372 aa10.62□□□□□ -0.71
VPS33B-208ENST00000574755 WFDC11Q8NEX6 87 aa10.62□□□□□ -0.71
VPS33B-208ENST00000574755 U3KQK5 164 aa10.62□□□□□ -0.71
VPS33B-208ENST00000574755 LGALS1P09382 135 aaKnown RBP10.62□□□□□ -0.71
VPS33B-208ENST00000574755 CKS2P33552 79 aa10.62□□□□□ -0.71
VPS33B-208ENST00000574755 OR8A1Q8NGG7 326 aa10.62□□□□□ -0.71
VPS33B-208ENST00000574755 C20orf144Q9BQM9 153 aa10.62□□□□□ -0.71
VPS33B-208ENST00000574755 TMEM70Q9BUB7 260 aa10.62□□□□□ -0.71
VPS33B-208ENST00000574755 LOC389332A0A1B0GUA5 103 aa10.61□□□□□ -0.71
VPS33B-208ENST00000574755 WFDC3Q8IUB2 231 aa10.61□□□□□ -0.71
VPS33B-208ENST00000574755 ATOH7Q8N100 152 aa10.61□□□□□ -0.71
VPS33B-208ENST00000574755 ZFAND2AQ8N6M9 145 aa10.61□□□□□ -0.71
VPS33B-208ENST00000574755 TIMM8BQ9Y5J9 83 aaPredicted RBP10.61□□□□□ -0.71
VPS33B-208ENST00000574755 OR5AL1P0C617 328 aa10.61□□□□□ -0.71
VPS33B-208ENST00000574755 IFI27P40305 119 aaPredicted RBP10.61□□□□□ -0.71
VPS33B-208ENST00000574755 MYOZ3Q8TDC0 251 aa10.61□□□□□ -0.71
VPS33B-208ENST00000574755 UBE2E2Q96LR5 201 aa10.61□□□□□ -0.71
VPS33B-208ENST00000574755 TLN2Q9Y4G6 2542 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 IGHV4OR15-8A0A075B7B6 117 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 A0A087WW49 117 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 SMKR1H3BMG3 65 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 ID1P41134 155 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 SYNJ2BPP57105 145 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 LINC00173Q6ZV60 143 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 OR10AG1Q8NH19 301 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 DCANP1Q8TF63 244 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 TRAV21A0A0B4J279 112 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 NCR2O95944 276 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 PLA2G2AP14555 144 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 SPATA45Q537H7 98 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 SAMD13Q5VXD3 122 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 SIGLEC8Q9NYZ4 499 aa10.6□□□□□ -0.71
VPS33B-208ENST00000574755 J3QKU1 62 aa10.59□□□□□ -0.71
VPS33B-208ENST00000574755 RNF185Q96GF1 192 aa10.59□□□□□ -0.71
VPS33B-208ENST00000574755 KMT2BQ9UMN6 2715 aaPredicted RBP10.59□□□□□ -0.71
VPS33B-208ENST00000574755 NPYP01303 97 aa10.59□□□□□ -0.71
VPS33B-208ENST00000574755 TFPI2P48307 235 aa10.59□□□□□ -0.71
VPS33B-208ENST00000574755 MS4A6AQ9H2W1 248 aa10.59□□□□□ -0.71
VPS33B-208ENST00000574755 SYS1-DBNDD2H3BUS1 97 aa10.58□□□□□ -0.72
VPS33B-208ENST00000574755 H3BVH4 76 aa10.58□□□□□ -0.72
VPS33B-208ENST00000574755 CRXO43186 299 aaPredicted RBP10.58□□□□□ -0.72
VPS33B-208ENST00000574755 HOXD3P31249 432 aaPredicted RBP10.58□□□□□ -0.72
VPS33B-208ENST00000574755 RNASE4P34096 147 aaKnown RBP10.58□□□□□ -0.72
VPS33B-208ENST00000574755 SPANXN1Q5VSR9 72 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms