RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 ANK1P16157 1881 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 DOCK1Q14185 1865 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 TNRC6AQ8NDV7 1962 aaKnown RBP0.64□□□□□ -2.31
VPS35-207ENST00000568191 TENM3Q9P273 2699 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 PTPRFP10586 1907 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 TCHHQ07283 1943 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 CEP192Q8TEP8 1941 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 KIAA1549LQ6ZVL6 1849 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 COL24A1Q17RW2 1714 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 ANKRD26Q9UPS8 1709 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 SMARCA4P51532 1647 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 ZFYVE16Q7Z3T8 1539 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 ZNF609O15014 1411 aa0.64□□□□□ -2.31
VPS35-207ENST00000568191 CASP8AP2Q9UKL3 1982 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 MGAMO43451 1857 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 PLXNA2O75051 1894 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 GLI3P10071 1580 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 NRKQ7Z2Y5 1582 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 TRBV20-1A0A075B6N2 111 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 IGHV3-64A0A075B6Q5 118 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 IGKV2D-26A0A0A0MRZ7 120 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 TRAV3A0A0B4J244 114 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 TRAV1-1A0A0B4J248 108 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 A0A0J9YX75 114 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 LOC107986453A0A1B0GWG9 222 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 OR51F1A6NGY5 319 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 HMSDA8MTL9 139 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 BBIP1A8MTZ0 92 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 ODF3BA8MYP8 253 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 B4DSR2 109 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 FNDC10F2Z333 226 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 CCDC179H3BU77 68 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 CDC42EP2O14613 210 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 LYRM1O43325 122 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 SNAPC5O75971 98 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 IGLV1-51P01701 117 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 CD3DP04234 171 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 SAA1P0DJI8 122 aaPredicted RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 PYYP10082 97 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 MGST1P10620 155 aaKnown RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 SLC25A4P12235 298 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 CCL4P13236 92 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 HIST1H1BP16401 226 aaKnown RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 PEBP1P30086 187 aaKnown RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 ZNF93P35789 620 aaPredicted RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 HINT1P49773 126 aaPredicted RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 ROMO1P60602 79 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 TMEM258P61165 79 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 PCBD1P61457 104 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 LSM3P62310 102 aaKnown RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 PPP3R1P63098 170 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 BTG2P78543 158 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 MRPS36P82909 103 aaKnown RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 ZNF90Q03938 601 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 ESRGQ1W209 222 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 MEIG1Q5JSS6 88 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 CLLU1Q5K131 121 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 SPANXN5Q5MJ07 72 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 TEX261Q6UWH6 196 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 ZNF826PQ6ZT77 177 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 Q6ZUT4 128 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 SNX29P2Q8IUI4 249 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 C8orf59Q8N0T1 100 aaPredicted RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 ATOH7Q8N100 152 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 Q8N2B8 174 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 LINC00471Q8N535 108 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 Q8N814 137 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 LINC00301Q8NCQ3 95 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 CCL4L1Q8NHW4 92 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 PP6455Q8WZ26 134 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 POP5Q969H6 163 aaKnown RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 CIB3Q96Q77 187 aaPredicted RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 SNRNP25Q9BV90 132 aaKnown RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 SLC35B3Q9H1N7 401 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 RERGLQ9H628 205 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 C14orf132Q9NPU4 83 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 FKBP11Q9NYL4 201 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 TAS2R4Q9NYW5 299 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 METTL1Q9UBP6 276 aaKnown RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 RPL26L1Q9UNX3 145 aaKnown RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 ZFP30Q9Y2G7 519 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 LSM2Q9Y333 95 aaKnown RBP0.63□□□□□ -2.31
VPS35-207ENST00000568191 DNAJC15Q9Y5T4 150 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 SLIT2O94813 1529 aa0.63□□□□□ -2.31
VPS35-207ENST00000568191 MYH8P13535 1937 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 CFTRP13569 1480 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 ABCC10Q5T3U5 1492 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 MED12Q93074 2177 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 DOCK11Q5JSL3 2073 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 TRAV12-2A0A075B6T6 113 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 TMSB15BA0A087X1C1 80 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 MUC21A0A0G2JKD1 596 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 MUC21A0A140T8X8 626 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 PNMA8CA0A1B0GUJ8 204 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 hDV103S1A0JD37 113 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 TMEM218A2RU14 115 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 A6NN06 94 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 IFITM5A6NNB3 132 aa0.62□□□□□ -2.31
VPS35-207ENST00000568191 C17orf112F2Z3M2 114 aa0.62□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms