RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	HIST1H1E	P10412	219 aa	Known RBP	4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	HTN1	P15515	57 aa		4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	HTN3	P15516	51 aa		4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	AZU1	P20160	251 aa		4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	DDT	P30046	118 aa		4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	SAPCD1	Q5SSQ6	148 aa		4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	RPL7L1	Q6DKI1	246 aa	Known RBP	4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	EIF5AL1	Q6IS14	154 aa	Known RBP	4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	POM121L12	Q8N7R1	296 aa		4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	OR5C1	Q8NGR4	320 aa		4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	NPCDR1	Q9BY65	106 aa		4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	TMEM14C	Q9P0S9	112 aa		4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	TIMM9	Q9Y5J7	89 aa		4.91	□□□□□ -1.62
SF3B3-209	ENST00000567635	TRBV19	A0A075B6N1	114 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	PLAC8L1	A1L4L8	177 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	CBY3	A6NI87	242 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635		H7BYZ3	331 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	LINC00614	P0C842	121 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	CT45A10	P0DMU9	189 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	DEFB130B	P0DP73	79 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	DEFB130A	P0DP74	79 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	LEP	P41159	167 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	PPT1	P50897	306 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	CLINT1	Q14677	625 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	ZNF493	Q6ZR52	646 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	HIST1H2BA	Q96A08	127 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	C20orf144	Q9BQM9	153 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	KRTAP17-1	Q9BYP8	105 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	SMIM3	Q9BZL3	60 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	TREM1	Q9NP99	234 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	ALMS1	Q8TCU4	4167 aa		4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	EPPK1	P58107	5090 aa	Known RBP	4.9	□□□□□ -1.63
SF3B3-209	ENST00000567635	DNAH1	Q9P2D7	4330 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	NPIPB6	E9PJ23	425 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	C17orf112	F2Z3M2	114 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	NDUFB4	O95168	129 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	NBEAP1	P0C6P0	100 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	SEC11B	P0C7V7	166 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	PYY	P10082	97 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	ADCYAP1	P18509	176 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	HOXA5	P20719	270 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	PDE6H	Q13956	83 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	ZNF266	Q14584	549 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	KIR3DS1	Q14943	382 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	GCSAML	Q5JQS6	135 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	SCGB1C1	Q8TD33	95 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	BLNK	Q8WV28	456 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	RNF141	Q8WVD5	230 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	MRPL53	Q96EL3	112 aa	Known RBP	4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	C16orf74	Q96GX8	76 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	FAM167A-AS1	Q96KT0	104 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	LINC00477	Q96M19	166 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	ODF3	Q96PU9	254 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	ATP5S	Q99766	215 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	SLC25A2	Q9BXI2	301 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	PARD6G	Q9BYG4	376 aa	Predicted RBP	4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	WDR61	Q9GZS3	305 aa	Known RBP	4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	AAMDC	Q9H7C9	122 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	NOP10	Q9NPE3	64 aa	Known RBP	4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	KCNIP2	Q9NS61	270 aa		4.89	□□□□□ -1.63
SF3B3-209	ENST00000567635	SACS	Q9NZJ4	4579 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	HYDIN	Q4G0P3	5121 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	TRAV12-3	A0A0B4J271	114 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635		F5H768	121 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635		J3KRW8	73 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635		M0R3E3	92 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	IFNA5	P01569	189 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	ATP5G1	P05496	136 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	RAB5A	P20339	215 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	ATP5G3	P48201	142 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	SULT1A2	P50226	295 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	GAGE1	Q13065	139 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	ERCC8	Q13216	396 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	GFI1B	Q5VTD9	330 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	MIR17HG	Q75NE6	70 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	UBE2DNL	Q8IWF7	75 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	EXOC3-AS1	Q8N2X6	119 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	C15orf53	Q8NAA6	179 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	RNASE8	Q8TDE3	154 aa	Known RBP	4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	TMEM263	Q8WUH6	116 aa	Known RBP	4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	TMED6	Q8WW62	240 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	GNPNAT1	Q96EK6	184 aa	Predicted RBP	4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	PAXX	Q9BUH6	204 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	MRPL32	Q9BYC8	188 aa	Known RBP	4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	AGPAT4-IT1	Q9H0P7	198 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	FUT9	Q9Y231	359 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635	KMT2A	Q03164	3969 aa		4.88	□□□□□ -1.63
SF3B3-209	ENST00000567635		M0R2N4	97 aa		4.87	□□□□□ -1.63
SF3B3-209	ENST00000567635	SLC25A5	P05141	298 aa	Known RBP	4.87	□□□□□ -1.63
SF3B3-209	ENST00000567635	OR10J4	P0C629	311 aa		4.87	□□□□□ -1.63
SF3B3-209	ENST00000567635	ATP6V0C	P27449	155 aa		4.87	□□□□□ -1.63
SF3B3-209	ENST00000567635	RNASE4	P34096	147 aa	Known RBP	4.87	□□□□□ -1.63
SF3B3-209	ENST00000567635	ICAM4	Q14773	271 aa		4.87	□□□□□ -1.63
SF3B3-209	ENST00000567635	LGALS9B	Q3B8N2	356 aa		4.87	□□□□□ -1.63
SF3B3-209	ENST00000567635	PYY3	Q5JQD4	70 aa		4.87	□□□□□ -1.63
SF3B3-209	ENST00000567635	FFAR4	Q5NUL3	377 aa		4.87	□□□□□ -1.63
SF3B3-209	ENST00000567635	C9orf47	Q6ZRZ4	202 aa		4.87	□□□□□ -1.63
SF3B3-209	ENST00000567635	MRPL52	Q86TS9	123 aa	Known RBP	4.87	□□□□□ -1.63
SF3B3-209	ENST00000567635	PYGO2	Q9BRQ0	406 aa		4.87	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms