RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 LINC00336Q6ZUF6 198 aa13.12□□□□□ -0.31
CLN3-227ENST00000567495 ST6GAL2Q96JF0 529 aa13.12□□□□□ -0.31
CLN3-227ENST00000567495 ARPC5LQ9BPX5 153 aa13.12□□□□□ -0.31
CLN3-227ENST00000567495 ACTR3CQ9C0K3 210 aaPredicted RBP13.12□□□□□ -0.31
CLN3-227ENST00000567495 TRGV2A0A075B6R0 118 aa13.11□□□□□ -0.31
CLN3-227ENST00000567495 H3BNG1 76 aa13.11□□□□□ -0.31
CLN3-227ENST00000567495 TAAR5O14804 337 aa13.11□□□□□ -0.31
CLN3-227ENST00000567495 HMGB3O15347 200 aaKnown RBP13.11□□□□□ -0.31
CLN3-227ENST00000567495 NUDT3O95989 172 aa13.11□□□□□ -0.31
CLN3-227ENST00000567495 Q6ZTI0 123 aa13.11□□□□□ -0.31
CLN3-227ENST00000567495 SUN5Q8TC36 379 aa13.11□□□□□ -0.31
CLN3-227ENST00000567495 TMEM167BQ9NRX6 74 aa13.11□□□□□ -0.31
CLN3-227ENST00000567495 TRGV1A0A0A0MS02 117 aa13.1□□□□□ -0.31
CLN3-227ENST00000567495 CXorf1O96002 111 aa13.1□□□□□ -0.31
CLN3-227ENST00000567495 GCHFRP30047 84 aa13.1□□□□□ -0.31
CLN3-227ENST00000567495 CCL18P55774 89 aa13.1□□□□□ -0.31
CLN3-227ENST00000567495 Q6AWC8 147 aa13.1□□□□□ -0.31
CLN3-227ENST00000567495 RPL7L1Q6DKI1 246 aaKnown RBP13.1□□□□□ -0.31
CLN3-227ENST00000567495 GOLT1AQ6ZVE7 132 aa13.1□□□□□ -0.31
CLN3-227ENST00000567495 SH3BGRL3Q9H299 93 aa13.1□□□□□ -0.31
CLN3-227ENST00000567495 DNAH6Q9C0G6 4158 aa13.09□□□□□ -0.31
CLN3-227ENST00000567495 TRAV26-1A0A087WT03 109 aa13.09□□□□□ -0.31
CLN3-227ENST00000567495 K7EQM0 130 aa13.09□□□□□ -0.31
CLN3-227ENST00000567495 SPINK4O60575 86 aa13.09□□□□□ -0.31
CLN3-227ENST00000567495 C5orf17Q8NAS9 161 aa13.09□□□□□ -0.31
CLN3-227ENST00000567495 KLF12Q9Y4X4 402 aa13.09□□□□□ -0.31
CLN3-227ENST00000567495 ZNF415Q09FC8 603 aa13.08□□□□□ -0.32
CLN3-227ENST00000567495 TMPRSS5Q9H3S3 457 aa13.08□□□□□ -0.32
CLN3-227ENST00000567495 RPH3ALQ9UNE2 315 aa13.08□□□□□ -0.32
CLN3-227ENST00000567495 TRGV11A0A075B6L2 103 aa13.07□□□□□ -0.32
CLN3-227ENST00000567495 G3V3Q6 166 aa13.07□□□□□ -0.32
CLN3-227ENST00000567495 M0R2N4 97 aa13.07□□□□□ -0.32
CLN3-227ENST00000567495 HOXA5P20719 270 aa13.07□□□□□ -0.32
CLN3-227ENST00000567495 FAM159AQ6UWV7 190 aa13.07□□□□□ -0.32
CLN3-227ENST00000567495 Q6ZR54 194 aa13.07□□□□□ -0.32
CLN3-227ENST00000567495 NDFIP1Q9BT67 221 aa13.07□□□□□ -0.32
CLN3-227ENST00000567495 TP53TG3Q9ULZ0 132 aa13.07□□□□□ -0.32
CLN3-227ENST00000567495 FBLL1A6NHQ2 334 aaKnown RBP13.06□□□□□ -0.32
CLN3-227ENST00000567495 ARPC5O15511 151 aa13.06□□□□□ -0.32
CLN3-227ENST00000567495 TDRG1Q3Y452 100 aa13.06□□□□□ -0.32
CLN3-227ENST00000567495 SOHLH1Q5JUK2 328 aa13.06□□□□□ -0.32
CLN3-227ENST00000567495 SPXQ9BT56 116 aa13.06□□□□□ -0.32
CLN3-227ENST00000567495 TREM1Q9NP99 234 aa13.06□□□□□ -0.32
CLN3-227ENST00000567495 IGLV2-18A0A075B6J9 118 aa13.05□□□□□ -0.32
CLN3-227ENST00000567495 TRAV21A0A0B4J279 112 aa13.05□□□□□ -0.32
CLN3-227ENST00000567495 TCRAP04437 139 aa13.05□□□□□ -0.32
CLN3-227ENST00000567495 SLAQ13239 276 aa13.05□□□□□ -0.32
CLN3-227ENST00000567495 MUC21Q5SSG8 566 aa13.05□□□□□ -0.32
CLN3-227ENST00000567495 AKR1C8PQ5T2L2 129 aa13.05□□□□□ -0.32
CLN3-227ENST00000567495 Q6ZQT7 251 aa13.05□□□□□ -0.32
CLN3-227ENST00000567495 DNAH10Q8IVF4 4471 aa13.05□□□□□ -0.32
CLN3-227ENST00000567495 TRAV8-1A0A0A6YYK1 113 aa13.04□□□□□ -0.32
CLN3-227ENST00000567495 CTXND1A0A1B0GTU2 59 aa13.04□□□□□ -0.32
CLN3-227ENST00000567495 A0A1W2PRE2 83 aa13.04□□□□□ -0.32
CLN3-227ENST00000567495 SUMO1P63165 101 aaKnown RBP13.04□□□□□ -0.32
CLN3-227ENST00000567495 GNG5P63218 68 aa13.04□□□□□ -0.32
CLN3-227ENST00000567495 EPDR1Q9UM22 224 aa13.04□□□□□ -0.32
CLN3-227ENST00000567495 A0A0J9YY99 117 aa13.03□□□□□ -0.32
CLN3-227ENST00000567495 ZNF345Q14585 488 aa13.03□□□□□ -0.32
CLN3-227ENST00000567495 TMEM183BQ1AE95 376 aa13.03□□□□□ -0.32
CLN3-227ENST00000567495 TMEM183AQ8IXX5 376 aa13.03□□□□□ -0.32
CLN3-227ENST00000567495 ZNRF2Q8NHG8 242 aa13.03□□□□□ -0.32
CLN3-227ENST00000567495 KCNS1Q96KK3 526 aa13.03□□□□□ -0.32
CLN3-227ENST00000567495 NKX6-2Q9C056 277 aaPredicted RBP13.03□□□□□ -0.32
CLN3-227ENST00000567495 LINC00588Q9Y4M8 146 aa13.03□□□□□ -0.32
CLN3-227ENST00000567495 GGTLC3B5MD39 225 aa13.02□□□□□ -0.33
CLN3-227ENST00000567495 SSX7Q7RTT5 188 aa13.02□□□□□ -0.33
CLN3-227ENST00000567495 IQCF2Q8IXL9 164 aa13.02□□□□□ -0.33
CLN3-227ENST00000567495 CYB561D1Q8N8Q1 229 aa13.02□□□□□ -0.33
CLN3-227ENST00000567495 RASL10AQ92737 203 aa13.02□□□□□ -0.33
CLN3-227ENST00000567495 TVP23CQ96ET8 276 aa13.02□□□□□ -0.33
CLN3-227ENST00000567495 CYTL1Q9NRR1 136 aa13.02□□□□□ -0.33
CLN3-227ENST00000567495 MRPL16Q9NX20 251 aaKnown RBP13.02□□□□□ -0.33
CLN3-227ENST00000567495 MDFICQ9P1T7 246 aa13.02□□□□□ -0.33
CLN3-227ENST00000567495 NAGKQ9UJ70 344 aa13.02□□□□□ -0.33
CLN3-227ENST00000567495 FRAS1Q86XX4 4008 aa13.02□□□□□ -0.33
CLN3-227ENST00000567495 VSIG2Q96IQ7 327 aa13.01□□□□□ -0.33
CLN3-227ENST00000567495 PRO0255Q9UI72 69 aa13.01□□□□□ -0.33
CLN3-227ENST00000567495 HMSDA8MTL9 139 aa13□□□□□ -0.33
CLN3-227ENST00000567495 RTL8CO15255 209 aa13□□□□□ -0.33
CLN3-227ENST00000567495 FLI1Q01543 452 aaPredicted RBP13□□□□□ -0.33
CLN3-227ENST00000567495 ZNF726P1Q15940 193 aa13□□□□□ -0.33
CLN3-227ENST00000567495 SAPCD1Q5SSQ6 148 aa13□□□□□ -0.33
CLN3-227ENST00000567495 C1orf134Q5TEV5 83 aa13□□□□□ -0.33
CLN3-227ENST00000567495 KCNRGQ8N5I3 272 aa13□□□□□ -0.33
CLN3-227ENST00000567495 TMEM75Q8N9X5 138 aa13□□□□□ -0.33
CLN3-227ENST00000567495 SDF2L1Q9HCN8 221 aa13□□□□□ -0.33
CLN3-227ENST00000567495 PSG8Q9UQ74 426 aa13□□□□□ -0.33
CLN3-227ENST00000567495 NBDYA0A0U1RRE5 68 aa12.99□□□□□ -0.33
CLN3-227ENST00000567495 PRSS29PA6NIE9 313 aa12.99□□□□□ -0.33
CLN3-227ENST00000567495 F6UZH7 168 aa12.99□□□□□ -0.33
CLN3-227ENST00000567495 PAX4O43316 350 aa12.99□□□□□ -0.33
CLN3-227ENST00000567495 PPT1P50897 306 aa12.99□□□□□ -0.33
CLN3-227ENST00000567495 ZFP69Q49AA0 526 aa12.99□□□□□ -0.33
CLN3-227ENST00000567495 STOML3Q8TAV4 291 aa12.99□□□□□ -0.33
CLN3-227ENST00000567495 UPK3BQ9BT76 320 aa12.99□□□□□ -0.33
CLN3-227ENST00000567495 IGHV3-16A0A0C4DH30 117 aa12.98□□□□□ -0.33
CLN3-227ENST00000567495 A0A0D9SG52 128 aa12.98□□□□□ -0.33
CLN3-227ENST00000567495 SMLR1H3BR10 107 aa12.98□□□□□ -0.33
CLN3-227ENST00000567495 M0R2P5 195 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms