RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 TP53TG3Q9ULZ0 132 aa12.87□□□□□ -0.35
CLN3-218ENST00000565688 H0YIZ8 118 aa12.86□□□□□ -0.35
CLN3-218ENST00000565688 UPK1BO75841 260 aa12.86□□□□□ -0.35
CLN3-218ENST00000565688 Q8TAT8 98 aa12.86□□□□□ -0.35
CLN3-218ENST00000565688 MRPL16Q9NX20 251 aaKnown RBP12.86□□□□□ -0.35
CLN3-218ENST00000565688 HHLA3Q9XRX5 114 aa12.86□□□□□ -0.35
CLN3-218ENST00000565688 NXPH4O95158 308 aa12.85□□□□□ -0.35
CLN3-218ENST00000565688 IGHV3-53P01767 116 aa12.85□□□□□ -0.35
CLN3-218ENST00000565688 LINC00315P59091 139 aa12.85□□□□□ -0.35
CLN3-218ENST00000565688 RANP62826 216 aaKnown RBP12.85□□□□□ -0.35
CLN3-218ENST00000565688 ZNF266Q14584 549 aa12.85□□□□□ -0.35
CLN3-218ENST00000565688 Q6ZQT7 251 aa12.85□□□□□ -0.35
CLN3-218ENST00000565688 ATP5SQ99766 215 aa12.85□□□□□ -0.35
CLN3-218ENST00000565688 PET100P0DJ07 73 aa12.84□□□□□ -0.35
CLN3-218ENST00000565688 CRYBA4P53673 196 aa12.84□□□□□ -0.35
CLN3-218ENST00000565688 KRTAP10-2P60368 255 aa12.84□□□□□ -0.35
CLN3-218ENST00000565688 UBE2L3P68036 154 aaKnown RBP12.84□□□□□ -0.35
CLN3-218ENST00000565688 MRPL23Q16540 153 aaKnown RBP12.84□□□□□ -0.35
CLN3-218ENST00000565688 LENEPQ9Y5L5 61 aa12.84□□□□□ -0.35
CLN3-218ENST00000565688 INMT-MINDY4F8WBC2 141 aa12.83□□□□□ -0.36
CLN3-218ENST00000565688 TAS2R45P59539 299 aa12.83□□□□□ -0.36
CLN3-218ENST00000565688 KHDC3LQ587J8 217 aa12.83□□□□□ -0.36
CLN3-218ENST00000565688 FFAR4Q5NUL3 377 aa12.83□□□□□ -0.36
CLN3-218ENST00000565688 Q8N1X5 172 aa12.83□□□□□ -0.36
CLN3-218ENST00000565688 PPP1R1CQ8WVI7 109 aa12.83□□□□□ -0.36
CLN3-218ENST00000565688 DNAH5Q8TE73 4624 aa12.82□□□□□ -0.36
CLN3-218ENST00000565688 IFNA5P01569 189 aa12.82□□□□□ -0.36
CLN3-218ENST00000565688 H2BFSP57053 126 aa12.82□□□□□ -0.36
CLN3-218ENST00000565688 FHL2Q14192 279 aa12.82□□□□□ -0.36
CLN3-218ENST00000565688 SCGB1C1Q8TD33 95 aa12.82□□□□□ -0.36
CLN3-218ENST00000565688 C8orf49Q96NF6 230 aa12.82□□□□□ -0.36
CLN3-218ENST00000565688 HSPB11Q9Y547 144 aa12.82□□□□□ -0.36
CLN3-218ENST00000565688 TRGV4A0A0C4DH28 118 aa12.81□□□□□ -0.36
CLN3-218ENST00000565688 MUC21Q5SSG8 566 aa12.81□□□□□ -0.36
CLN3-218ENST00000565688 Q6AWC8 147 aa12.81□□□□□ -0.36
CLN3-218ENST00000565688 LYPD5Q6UWN5 251 aa12.81□□□□□ -0.36
CLN3-218ENST00000565688 FAM159AQ6UWV7 190 aa12.81□□□□□ -0.36
CLN3-218ENST00000565688 Q6ZRN7 208 aaPredicted RBP12.81□□□□□ -0.36
CLN3-218ENST00000565688 NEGR1Q7Z3B1 354 aa12.81□□□□□ -0.36
CLN3-218ENST00000565688 IQCF2Q8IXL9 164 aa12.81□□□□□ -0.36
CLN3-218ENST00000565688 TMED6Q8WW62 240 aa12.81□□□□□ -0.36
CLN3-218ENST00000565688 SPXQ9BT56 116 aa12.81□□□□□ -0.36
CLN3-218ENST00000565688 APOBP04114 4563 aaKnown RBP12.81□□□□□ -0.36
CLN3-218ENST00000565688 TRGV11A0A075B6L2 103 aa12.8□□□□□ -0.36
CLN3-218ENST00000565688 TRAV9-2A0A087WT02 112 aa12.8□□□□□ -0.36
CLN3-218ENST00000565688 DIRC3C9JPN6 131 aa12.8□□□□□ -0.36
CLN3-218ENST00000565688 EREGO14944 169 aa12.8□□□□□ -0.36
CLN3-218ENST00000565688 NFE4Q86UQ8 179 aa12.8□□□□□ -0.36
CLN3-218ENST00000565688 OR10G4Q8NGN3 311 aa12.8□□□□□ -0.36
CLN3-218ENST00000565688 RASL10AQ92737 203 aa12.8□□□□□ -0.36
CLN3-218ENST00000565688 MARVELD1Q9BSK0 173 aa12.8□□□□□ -0.36
CLN3-218ENST00000565688 MDFICQ9P1T7 246 aa12.8□□□□□ -0.36
CLN3-218ENST00000565688 SSNA1O43805 119 aa12.79□□□□□ -0.36
CLN3-218ENST00000565688 MPC2O95563 127 aa12.79□□□□□ -0.36
CLN3-218ENST00000565688 TMEM183BQ1AE95 376 aa12.79□□□□□ -0.36
CLN3-218ENST00000565688 FAM74A1Q5RGS3 127 aa12.79□□□□□ -0.36
CLN3-218ENST00000565688 TMEM183AQ8IXX5 376 aa12.79□□□□□ -0.36
CLN3-218ENST00000565688 PCNPQ8WW12 178 aaKnown RBP12.79□□□□□ -0.36
CLN3-218ENST00000565688 OTORQ9NRC9 128 aa12.79□□□□□ -0.36
CLN3-218ENST00000565688 PGPEP1Q9NXJ5 209 aa12.79□□□□□ -0.36
CLN3-218ENST00000565688 K7EP13 123 aa12.78□□□□□ -0.36
CLN3-218ENST00000565688 ORM1P02763 201 aa12.78□□□□□ -0.36
CLN3-218ENST00000565688 RPL12P30050 165 aaKnown RBP12.78□□□□□ -0.36
CLN3-218ENST00000565688 SRIP30626 198 aa12.78□□□□□ -0.36
CLN3-218ENST00000565688 ERVFC1-1P60608 527 aa12.78□□□□□ -0.36
CLN3-218ENST00000565688 IFITM3Q01628 133 aa12.78□□□□□ -0.36
CLN3-218ENST00000565688 ARL6IP6Q8N6S5 226 aa12.78□□□□□ -0.36
CLN3-218ENST00000565688 CMTM2Q8TAZ6 248 aa12.78□□□□□ -0.36
CLN3-218ENST00000565688 HYLS1Q96M11 299 aa12.78□□□□□ -0.36
CLN3-218ENST00000565688 SCRT2Q9NQ03 307 aa12.78□□□□□ -0.36
CLN3-218ENST00000565688 TDRG1Q3Y452 100 aa12.77□□□□□ -0.37
CLN3-218ENST00000565688 SMIM3Q9BZL3 60 aa12.77□□□□□ -0.37
CLN3-218ENST00000565688 PTTG2Q9NZH5 202 aa12.77□□□□□ -0.37
CLN3-218ENST00000565688 MBD2Q9UBB5 411 aa12.77□□□□□ -0.37
CLN3-218ENST00000565688 LY96Q9Y6Y9 160 aa12.77□□□□□ -0.37
CLN3-218ENST00000565688 K7EQD1 137 aa12.76□□□□□ -0.37
CLN3-218ENST00000565688 SFTA3P0C7M3 94 aa12.76□□□□□ -0.37
CLN3-218ENST00000565688 CDPF1Q6NVV7 123 aa12.76□□□□□ -0.37
CLN3-218ENST00000565688 PQLC2Q6ZP29 291 aa12.76□□□□□ -0.37
CLN3-218ENST00000565688 ZNF479Q96JC4 524 aa12.76□□□□□ -0.37
CLN3-218ENST00000565688 A0A1W2PPV4 95 aa12.75□□□□□ -0.37
CLN3-218ENST00000565688 PGPA6NDG6 321 aa12.75□□□□□ -0.37
CLN3-218ENST00000565688 C9JCJ5 164 aa12.75□□□□□ -0.37
CLN3-218ENST00000565688 GYPEP15421 78 aa12.75□□□□□ -0.37
CLN3-218ENST00000565688 DEFA1P59665 94 aa12.75□□□□□ -0.37
CLN3-218ENST00000565688 DEFA3P59666 94 aa12.75□□□□□ -0.37
CLN3-218ENST00000565688 ACOT6Q3I5F7 207 aaPredicted RBP12.75□□□□□ -0.37
CLN3-218ENST00000565688 TXNDC17Q9BRA2 123 aa12.75□□□□□ -0.37
CLN3-218ENST00000565688 NAGKQ9UJ70 344 aa12.75□□□□□ -0.37
CLN3-218ENST00000565688 TRAV4A0A0B4J268 109 aa12.74□□□□□ -0.37
CLN3-218ENST00000565688 EVI2AP22794 236 aa12.74□□□□□ -0.37
CLN3-218ENST00000565688 RPH3ALQ9UNE2 315 aa12.74□□□□□ -0.37
CLN3-218ENST00000565688 TRAV21A0A0B4J279 112 aa12.73□□□□□ -0.37
CLN3-218ENST00000565688 M0R2P5 195 aa12.73□□□□□ -0.37
CLN3-218ENST00000565688 GOLT1AQ6ZVE7 132 aa12.73□□□□□ -0.37
CLN3-218ENST00000565688 SH2D6Q7Z4S9 175 aa12.73□□□□□ -0.37
CLN3-218ENST00000565688 OR4C5Q8NGB2 326 aa12.73□□□□□ -0.37
CLN3-218ENST00000565688 IGHV3-16A0A0C4DH30 117 aa12.72□□□□□ -0.37
CLN3-218ENST00000565688 KCNS1Q96KK3 526 aa12.72□□□□□ -0.37
CLN3-218ENST00000565688 SDF2L1Q9HCN8 221 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms