RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 Q8TAT8 98 aa9.48□□□□□ -0.89
CLK3-216ENST00000564468 IGHV1OR15-1A0A075B7D0 117 aa9.47□□□□□ -0.89
CLK3-216ENST00000564468 F5H768 121 aa9.47□□□□□ -0.89
CLK3-216ENST00000564468 SMLR1H3BR10 107 aa9.47□□□□□ -0.89
CLK3-216ENST00000564468 EIF5AP63241 154 aaKnown RBP9.47□□□□□ -0.89
CLK3-216ENST00000564468 IBA57Q5T440 356 aaKnown RBP9.47□□□□□ -0.89
CLK3-216ENST00000564468 IQCF2Q8IXL9 164 aa9.47□□□□□ -0.89
CLK3-216ENST00000564468 NDFIP1Q9BT67 221 aa9.47□□□□□ -0.89
CLK3-216ENST00000564468 CYTL1Q9NRR1 136 aa9.47□□□□□ -0.89
CLK3-216ENST00000564468 MUC4Q99102 2169 aa9.46□□□□□ -0.89
CLK3-216ENST00000564468 KANTRA0A1W2PQU2 76 aa9.46□□□□□ -0.9
CLK3-216ENST00000564468 A0A1W2PRE2 83 aa9.46□□□□□ -0.9
CLK3-216ENST00000564468 FBLL1A6NHQ2 334 aaKnown RBP9.46□□□□□ -0.9
CLK3-216ENST00000564468 Q6AWC8 147 aa9.46□□□□□ -0.9
CLK3-216ENST00000564468 TMEM88Q6PEY1 159 aa9.46□□□□□ -0.9
CLK3-216ENST00000564468 LINC00612Q8N6U2 182 aa9.46□□□□□ -0.9
CLK3-216ENST00000564468 SUMO1P63165 101 aaKnown RBP9.45□□□□□ -0.9
CLK3-216ENST00000564468 PRR9Q5T870 116 aa9.45□□□□□ -0.9
CLK3-216ENST00000564468 FAM159AQ6UWV7 190 aa9.45□□□□□ -0.9
CLK3-216ENST00000564468 POM121L12Q8N7R1 296 aa9.45□□□□□ -0.9
CLK3-216ENST00000564468 STOML3Q8TAV4 291 aa9.45□□□□□ -0.9
CLK3-216ENST00000564468 NKX6-2Q9C056 277 aaPredicted RBP9.45□□□□□ -0.9
CLK3-216ENST00000564468 GSN-AS1Q9NRJ2 163 aa9.45□□□□□ -0.9
CLK3-216ENST00000564468 NACAE9PAV3 2078 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 TRAV21A0A0B4J279 112 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 GAGE12BA1L429 117 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 GAGE7O76087 117 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 TCRAP04437 139 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 SEC11BP0C7V7 166 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 GAGE12FP0CL80 117 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 GAGE12GP0CL81 117 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 GAGE12IP0CL82 117 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 TCL1AP56279 114 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 GNG5P63218 68 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 ZNF415Q09FC8 603 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 UBE2DNLQ8IWF7 75 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 C11orf72Q8NBR9 251 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 OR11H4Q8NGC9 324 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 TREM1Q9NP99 234 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 EPDR1Q9UM22 224 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 PCLOQ9Y6V0 5065 aa9.44□□□□□ -0.9
CLK3-216ENST00000564468 TRGV11A0A075B6L2 103 aa9.43□□□□□ -0.9
CLK3-216ENST00000564468 TRGV2A0A075B6R0 118 aa9.43□□□□□ -0.9
CLK3-216ENST00000564468 UMAD1C9J7I0 102 aa9.43□□□□□ -0.9
CLK3-216ENST00000564468 BCL2L11O43521 198 aa9.43□□□□□ -0.9
CLK3-216ENST00000564468 PFDN1O60925 122 aa9.43□□□□□ -0.9
CLK3-216ENST00000564468 ZNF726P1Q15940 193 aa9.43□□□□□ -0.9
CLK3-216ENST00000564468 LGALS9BQ3B8N2 356 aa9.43□□□□□ -0.9
CLK3-216ENST00000564468 RNF212Q495C1 297 aa9.43□□□□□ -0.9
CLK3-216ENST00000564468 SSX7Q7RTT5 188 aa9.43□□□□□ -0.9
CLK3-216ENST00000564468 CYB561D1Q8N8Q1 229 aa9.43□□□□□ -0.9
CLK3-216ENST00000564468 C18orf15Q96N68 181 aa9.43□□□□□ -0.9
CLK3-216ENST00000564468 ATG101Q9BSB4 218 aa9.43□□□□□ -0.9
CLK3-216ENST00000564468 ZNF471Q9BX82 626 aaPredicted RBP9.43□□□□□ -0.9
CLK3-216ENST00000564468 KMT2AQ03164 3969 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 TRGV1A0A0A0MS02 117 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 TRAV8-1A0A0A6YYK1 113 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 MAP1LC3B2A6NCE7 125 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 GGTLC3B5MD39 225 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 SPINK4O60575 86 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 IFNA7P01567 189 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 PPT1P50897 306 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 OR5I1Q13606 314 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 ZFP69Q49AA0 526 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 MUC21Q5SSG8 566 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 Q6ZTI0 123 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 MAP1LC3BQ9GZQ8 125 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 PSG8Q9UQ74 426 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 KLF12Q9Y4X4 402 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 HERC2O95714 4834 aa9.42□□□□□ -0.9
CLK3-216ENST00000564468 NUDT3O95989 172 aa9.41□□□□□ -0.9
CLK3-216ENST00000564468 FGF8P55075 233 aaPredicted RBP9.41□□□□□ -0.9
CLK3-216ENST00000564468 FAM3BP58499 235 aaPredicted RBP9.41□□□□□ -0.9
CLK3-216ENST00000564468 FLI1Q01543 452 aaPredicted RBP9.41□□□□□ -0.9
CLK3-216ENST00000564468 TDRG1Q3Y452 100 aa9.41□□□□□ -0.9
CLK3-216ENST00000564468 SAPCD1Q5SSQ6 148 aa9.41□□□□□ -0.9
CLK3-216ENST00000564468 DPPA3Q6W0C5 159 aa9.41□□□□□ -0.9
CLK3-216ENST00000564468 TMEM75Q8N9X5 138 aa9.41□□□□□ -0.9
CLK3-216ENST00000564468 KCNS1Q96KK3 526 aa9.41□□□□□ -0.9
CLK3-216ENST00000564468 SPXQ9BT56 116 aa9.41□□□□□ -0.9
CLK3-216ENST00000564468 TMPRSS5Q9H3S3 457 aa9.41□□□□□ -0.9
CLK3-216ENST00000564468 TP53TG3Q9ULZ0 132 aa9.41□□□□□ -0.9
CLK3-216ENST00000564468 F6UZH7 168 aa9.4□□□□□ -0.9
CLK3-216ENST00000564468 H3BNG1 76 aa9.4□□□□□ -0.9
CLK3-216ENST00000564468 TPT1P13693 172 aaKnown RBP9.4□□□□□ -0.9
CLK3-216ENST00000564468 UBE2G2P60604 165 aa9.4□□□□□ -0.9
CLK3-216ENST00000564468 TMEM183BQ1AE95 376 aa9.4□□□□□ -0.9
CLK3-216ENST00000564468 Q6ZQT7 251 aa9.4□□□□□ -0.9
CLK3-216ENST00000564468 TMUB2Q71RG4 321 aa9.4□□□□□ -0.9
CLK3-216ENST00000564468 TMEM183AQ8IXX5 376 aa9.4□□□□□ -0.9
CLK3-216ENST00000564468 TCTE3Q8IZS6 198 aa9.4□□□□□ -0.9
CLK3-216ENST00000564468 HIST1H2BAQ96A08 127 aa9.4□□□□□ -0.9
CLK3-216ENST00000564468 NAGKQ9UJ70 344 aa9.4□□□□□ -0.9
CLK3-216ENST00000564468 ARL2-SNX15V9GYD0 113 aa9.4□□□□□ -0.9
CLK3-216ENST00000564468 FAM74A7A6NL05 159 aa9.39□□□□□ -0.91
CLK3-216ENST00000564468 SLAQ13239 276 aa9.39□□□□□ -0.91
CLK3-216ENST00000564468 SMUG1Q53HV7 270 aa9.39□□□□□ -0.91
CLK3-216ENST00000564468 EIF5AL1Q6IS14 154 aaKnown RBP9.39□□□□□ -0.91
CLK3-216ENST00000564468 Q6ZNX1 250 aa9.39□□□□□ -0.91
CLK3-216ENST00000564468 PRNTQ86SH4 94 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms