RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 APOC4P55056 127 aa12.11□□□□□ -0.47
VPS4A-202ENST00000562754 NUTF2P61970 127 aaKnown RBP12.11□□□□□ -0.47
VPS4A-202ENST00000562754 DEFA6Q01524 100 aa12.11□□□□□ -0.47
VPS4A-202ENST00000562754 RBMY1FQ15415 496 aaKnown RBP12.11□□□□□ -0.47
VPS4A-202ENST00000562754 SAPCD1Q5SSQ6 148 aa12.11□□□□□ -0.47
VPS4A-202ENST00000562754 MRAPQ8TCY5 172 aa12.11□□□□□ -0.47
VPS4A-202ENST00000562754 MLST8Q9BVC4 326 aa12.11□□□□□ -0.47
VPS4A-202ENST00000562754 ZNF727A8MUV8 499 aa12.1□□□□□ -0.47
VPS4A-202ENST00000562754 AMBPP02760 352 aa12.1□□□□□ -0.47
VPS4A-202ENST00000562754 ZNF80P51504 273 aaPredicted RBP12.1□□□□□ -0.47
VPS4A-202ENST00000562754 DEFB121Q5J5C9 76 aa12.1□□□□□ -0.47
VPS4A-202ENST00000562754 Q6ZQT7 251 aa12.1□□□□□ -0.47
VPS4A-202ENST00000562754 COX8CQ7Z4L0 72 aa12.1□□□□□ -0.47
VPS4A-202ENST00000562754 TMEM183AQ8IXX5 376 aa12.1□□□□□ -0.47
VPS4A-202ENST00000562754 ZC2HC1AQ96GY0 325 aa12.1□□□□□ -0.47
VPS4A-202ENST00000562754 C7orf71A4D174 169 aa12.09□□□□□ -0.47
VPS4A-202ENST00000562754 GPX1P07203 203 aa12.09□□□□□ -0.47
VPS4A-202ENST00000562754 RNASE4P34096 147 aaKnown RBP12.09□□□□□ -0.47
VPS4A-202ENST00000562754 SMUG1Q53HV7 270 aa12.09□□□□□ -0.47
VPS4A-202ENST00000562754 SOHLH1Q5JUK2 328 aa12.09□□□□□ -0.47
VPS4A-202ENST00000562754 SLC7A5P1Q8MH63 180 aa12.09□□□□□ -0.47
VPS4A-202ENST00000562754 CSNK1G2-AS1Q8NCQ2 148 aa12.09□□□□□ -0.47
VPS4A-202ENST00000562754 TMEM218A2RU14 115 aa12.08□□□□□ -0.48
VPS4A-202ENST00000562754 GCGP01275 180 aa12.08□□□□□ -0.48
VPS4A-202ENST00000562754 INSP01308 110 aa12.08□□□□□ -0.48
VPS4A-202ENST00000562754 ADCYAP1P18509 176 aa12.08□□□□□ -0.48
VPS4A-202ENST00000562754 C1QTNF4Q9BXJ3 329 aa12.08□□□□□ -0.48
VPS4A-202ENST00000562754 MEGF8Q7Z7M0 2845 aa12.08□□□□□ -0.48
VPS4A-202ENST00000562754 TRAV12-3A0A0B4J271 114 aa12.07□□□□□ -0.48
VPS4A-202ENST00000562754 K7EN84 100 aa12.07□□□□□ -0.48
VPS4A-202ENST00000562754 UBE2CO00762 179 aa12.07□□□□□ -0.48
VPS4A-202ENST00000562754 CRIP1P50238 77 aa12.07□□□□□ -0.48
VPS4A-202ENST00000562754 DEFB135Q30KP9 77 aa12.07□□□□□ -0.48
VPS4A-202ENST00000562754 FAM74A3Q4VXF1 159 aa12.07□□□□□ -0.48
VPS4A-202ENST00000562754 Q6AWC8 147 aa12.07□□□□□ -0.48
VPS4A-202ENST00000562754 C1orf158Q8N1D5 194 aa12.07□□□□□ -0.48
VPS4A-202ENST00000562754 OCC1Q8TAD7 63 aa12.07□□□□□ -0.48
VPS4A-202ENST00000562754 SMIM12Q96EX1 92 aa12.07□□□□□ -0.48
VPS4A-202ENST00000562754 ZNF324O75467 553 aaPredicted RBP12.06□□□□□ -0.48
VPS4A-202ENST00000562754 SBSPONQ8IVN8 264 aa12.06□□□□□ -0.48
VPS4A-202ENST00000562754 SH2D1AO60880 128 aa12.05□□□□□ -0.48
VPS4A-202ENST00000562754 MGST1P10620 155 aaKnown RBP12.05□□□□□ -0.48
VPS4A-202ENST00000562754 NDUFA5Q16718 116 aa12.05□□□□□ -0.48
VPS4A-202ENST00000562754 LINC01551Q86U37 167 aa12.05□□□□□ -0.48
VPS4A-202ENST00000562754 RETNQ9HD89 108 aa12.05□□□□□ -0.48
VPS4A-202ENST00000562754 C11orf21Q9P2W6 132 aa12.05□□□□□ -0.48
VPS4A-202ENST00000562754 NAT8Q9UHE5 227 aa12.05□□□□□ -0.48
VPS4A-202ENST00000562754 LY96Q9Y6Y9 160 aa12.05□□□□□ -0.48
VPS4A-202ENST00000562754 PFN1P07737 140 aaKnown RBP12.04□□□□□ -0.48
VPS4A-202ENST00000562754 OR5I1Q13606 314 aa12.04□□□□□ -0.48
VPS4A-202ENST00000562754 TMEM241Q24JQ0 296 aa12.04□□□□□ -0.48
VPS4A-202ENST00000562754 PRR27Q6MZM9 219 aa12.04□□□□□ -0.48
VPS4A-202ENST00000562754 ZNF705AQ6ZN79 300 aaPredicted RBP12.04□□□□□ -0.48
VPS4A-202ENST00000562754 Q6ZWC4 215 aa12.04□□□□□ -0.48
VPS4A-202ENST00000562754 C20orf144Q9BQM9 153 aa12.04□□□□□ -0.48
VPS4A-202ENST00000562754 TRAV21A0A0B4J279 112 aa12.03□□□□□ -0.48
VPS4A-202ENST00000562754 RPL23P62829 140 aaKnown RBP12.03□□□□□ -0.48
VPS4A-202ENST00000562754 FAM162BQ5T6X4 162 aa12.03□□□□□ -0.48
VPS4A-202ENST00000562754 RNF183Q96D59 192 aa12.03□□□□□ -0.48
VPS4A-202ENST00000562754 NIPSNAP3BQ9BS92 247 aa12.03□□□□□ -0.48
VPS4A-202ENST00000562754 SDF2L1Q9HCN8 221 aa12.03□□□□□ -0.48
VPS4A-202ENST00000562754 GOLT1BQ9Y3E0 138 aa12.03□□□□□ -0.48
VPS4A-202ENST00000562754 IGHV3OR16-12A0A075B7B8 117 aa12.02□□□□□ -0.49
VPS4A-202ENST00000562754 F8W036 122 aa12.02□□□□□ -0.49
VPS4A-202ENST00000562754 MUC21Q5SSG8 566 aa12.02□□□□□ -0.49
VPS4A-202ENST00000562754 RCHY1Q96PM5 261 aa12.02□□□□□ -0.49
VPS4A-202ENST00000562754 B9D2Q9BPU9 175 aa12.02□□□□□ -0.49
VPS4A-202ENST00000562754 SEC11CQ9BY50 192 aa12.02□□□□□ -0.49
VPS4A-202ENST00000562754 C19orf71A6NCJ1 209 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 FABP5P3A8MUU1 101 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 H7BYZ3 331 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 PRM2P04554 102 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 ADIRFQ15847 76 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 C10orf91Q5T1B1 145 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 TMEM256Q8N2U0 113 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 LINC01587Q99440 93 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 TM2D3Q9BRN9 247 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 OVOL2Q9BRP0 275 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 TMEM208Q9BTX3 173 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 NAGKQ9UJ70 344 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 X6R8D5 127 aa12.01□□□□□ -0.49
VPS4A-202ENST00000562754 SPRY2O43597 315 aa12□□□□□ -0.49
VPS4A-202ENST00000562754 ANXA2RQ3ZCQ2 193 aa12□□□□□ -0.49
VPS4A-202ENST00000562754 ISOC2Q96AB3 205 aa12□□□□□ -0.49
VPS4A-202ENST00000562754 BIN3Q9NQY0 253 aa12□□□□□ -0.49
VPS4A-202ENST00000562754 TP53TG1Q9Y2A0 90 aa12□□□□□ -0.49
VPS4A-202ENST00000562754 CARHSP1Q9Y2V2 147 aaKnown RBP12□□□□□ -0.49
VPS4A-202ENST00000562754 TENM3Q9P273 2699 aa11.99□□□□□ -0.49
VPS4A-202ENST00000562754 NBEAL2Q6ZNJ1 2754 aa11.99□□□□□ -0.49
VPS4A-202ENST00000562754 IGHV1OR15-1A0A075B7D0 117 aa11.99□□□□□ -0.49
VPS4A-202ENST00000562754 IGKV3D-20A0A0C4DH25 116 aa11.99□□□□□ -0.49
VPS4A-202ENST00000562754 ZNF705GA8MUZ8 300 aaPredicted RBP11.99□□□□□ -0.49
VPS4A-202ENST00000562754 M0R036 132 aa11.99□□□□□ -0.49
VPS4A-202ENST00000562754 RPL19P84098 196 aaKnown RBP11.99□□□□□ -0.49
VPS4A-202ENST00000562754 LINC01559Q495D7 138 aa11.99□□□□□ -0.49
VPS4A-202ENST00000562754 PYGO2Q9BRQ0 406 aa11.99□□□□□ -0.49
VPS4A-202ENST00000562754 LINC00467Q9BRT7 94 aa11.99□□□□□ -0.49
VPS4A-202ENST00000562754 RNASE7Q9H1E1 156 aaKnown RBP11.99□□□□□ -0.49
VPS4A-202ENST00000562754 PRKDCP78527 4128 aaKnown RBP11.99□□□□□ -0.49
VPS4A-202ENST00000562754 TDRG1Q3Y452 100 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms