RNA–Protein interactions for RNA: ENST00000561065.1

LMX1B-204, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMX1B, Length 1,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-204ENST00000561065 VGLL1Q99990 258 aa11.23□□□□□ -0.61
LMX1B-204ENST00000561065 NDFIP1Q9BT67 221 aa11.23□□□□□ -0.61
LMX1B-204ENST00000561065 NKX6-2Q9C056 277 aaPredicted RBP11.23□□□□□ -0.61
LMX1B-204ENST00000561065 IGLV2-18A0A075B6J9 118 aa11.22□□□□□ -0.61
LMX1B-204ENST00000561065 A0A1B0GVY2 172 aa11.22□□□□□ -0.61
LMX1B-204ENST00000561065 HMGB3O15347 200 aaKnown RBP11.22□□□□□ -0.61
LMX1B-204ENST00000561065 ZNF324O75467 553 aaPredicted RBP11.22□□□□□ -0.61
LMX1B-204ENST00000561065 DAZ2Q13117 558 aaKnown RBP11.22□□□□□ -0.61
LMX1B-204ENST00000561065 ZNF345Q14585 488 aa11.22□□□□□ -0.61
LMX1B-204ENST00000561065 STOML3Q8TAV4 291 aa11.22□□□□□ -0.61
LMX1B-204ENST00000561065 ARPC5LQ9BPX5 153 aa11.22□□□□□ -0.61
LMX1B-204ENST00000561065 F5H768 121 aa11.21□□□□□ -0.61
LMX1B-204ENST00000561065 GCHFRP30047 84 aa11.21□□□□□ -0.61
LMX1B-204ENST00000561065 Q6ZR54 194 aa11.21□□□□□ -0.61
LMX1B-204ENST00000561065 UBE2DNLQ8IWF7 75 aa11.21□□□□□ -0.61
LMX1B-204ENST00000561065 IQCF2Q8IXL9 164 aa11.21□□□□□ -0.61
LMX1B-204ENST00000561065 C5orf17Q8NAS9 161 aa11.21□□□□□ -0.61
LMX1B-204ENST00000561065 IGHV1OR15-1A0A075B7D0 117 aa11.2□□□□□ -0.62
LMX1B-204ENST00000561065 CTXND1A0A1B0GTU2 59 aa11.2□□□□□ -0.62
LMX1B-204ENST00000561065 KANTRA0A1W2PQU2 76 aa11.2□□□□□ -0.62
LMX1B-204ENST00000561065 CD300CQ08708 224 aa11.2□□□□□ -0.62
LMX1B-204ENST00000561065 BTN1A1Q13410 526 aa11.2□□□□□ -0.62
LMX1B-204ENST00000561065 LGALS9BQ3B8N2 356 aa11.2□□□□□ -0.62
LMX1B-204ENST00000561065 FAM159AQ6UWV7 190 aa11.2□□□□□ -0.62
LMX1B-204ENST00000561065 ZFAND2AQ8N6M9 145 aa11.2□□□□□ -0.62
LMX1B-204ENST00000561065 SUN5Q8TC36 379 aa11.2□□□□□ -0.62
LMX1B-204ENST00000561065 SH3BGRL3Q9H299 93 aa11.2□□□□□ -0.62
LMX1B-204ENST00000561065 RPH3ALQ9UNE2 315 aa11.2□□□□□ -0.62
LMX1B-204ENST00000561065 RNF212Q495C1 297 aa11.19□□□□□ -0.62
LMX1B-204ENST00000561065 IBA57Q5T440 356 aaKnown RBP11.19□□□□□ -0.62
LMX1B-204ENST00000561065 LINC00336Q6ZUF6 198 aa11.19□□□□□ -0.62
LMX1B-204ENST00000561065 GOLT1AQ6ZVE7 132 aa11.19□□□□□ -0.62
LMX1B-204ENST00000561065 KCNRGQ8N5I3 272 aa11.19□□□□□ -0.62
LMX1B-204ENST00000561065 TRGV2A0A075B6R0 118 aa11.18□□□□□ -0.62
LMX1B-204ENST00000561065 A0A1W2PRE2 83 aa11.18□□□□□ -0.62
LMX1B-204ENST00000561065 UMAD1C9J7I0 102 aa11.18□□□□□ -0.62
LMX1B-204ENST00000561065 PPT1P50897 306 aa11.18□□□□□ -0.62
LMX1B-204ENST00000561065 SUMO1P63165 101 aaKnown RBP11.18□□□□□ -0.62
LMX1B-204ENST00000561065 LINC00612Q8N6U2 182 aa11.18□□□□□ -0.62
LMX1B-204ENST00000561065 TREM1Q9NP99 234 aa11.18□□□□□ -0.62
LMX1B-204ENST00000561065 TRAV21A0A0B4J279 112 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 GAGE12BA1L429 117 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 F6UZH7 168 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 PFDN1O60925 122 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 GAGE7O76087 117 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 IFNA7P01567 189 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 GAGE12FP0CL80 117 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 GAGE12GP0CL81 117 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 GAGE12IP0CL82 117 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 FAM3BP58499 235 aaPredicted RBP11.17□□□□□ -0.62
LMX1B-204ENST00000561065 ZNF415Q09FC8 603 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 ZFP69Q49AA0 526 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 Q8TAT8 98 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 KCNS1Q96KK3 526 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 ATG101Q9BSB4 218 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 EPDR1Q9UM22 224 aa11.17□□□□□ -0.62
LMX1B-204ENST00000561065 TRGV11A0A075B6L2 103 aa11.16□□□□□ -0.62
LMX1B-204ENST00000561065 EIF3GO75821 320 aaKnown RBP eCLIP11.16□□□□□ -0.62
LMX1B-204ENST00000561065 SEC11BP0C7V7 166 aa11.16□□□□□ -0.62
LMX1B-204ENST00000561065 SLAQ13239 276 aa11.16□□□□□ -0.62
LMX1B-204ENST00000561065 OR5I1Q13606 314 aa11.16□□□□□ -0.62
LMX1B-204ENST00000561065 SAPCD1Q5SSQ6 148 aa11.16□□□□□ -0.62
LMX1B-204ENST00000561065 Q6AWC8 147 aa11.16□□□□□ -0.62
LMX1B-204ENST00000561065 EIF5AL1Q6IS14 154 aaKnown RBP11.16□□□□□ -0.62
LMX1B-204ENST00000561065 SPXQ9BT56 116 aa11.16□□□□□ -0.62
LMX1B-204ENST00000561065 GSN-AS1Q9NRJ2 163 aa11.16□□□□□ -0.62
LMX1B-204ENST00000561065 PRSS29PA6NIE9 313 aa11.15□□□□□ -0.62
LMX1B-204ENST00000561065 G3V3Q6 166 aa11.15□□□□□ -0.62
LMX1B-204ENST00000561065 TCRAP04437 139 aa11.15□□□□□ -0.62
LMX1B-204ENST00000561065 TCL1AP56279 114 aa11.15□□□□□ -0.62
LMX1B-204ENST00000561065 CYB561D1Q8N8Q1 229 aa11.15□□□□□ -0.62
LMX1B-204ENST00000561065 C18orf15Q96N68 181 aa11.15□□□□□ -0.62
LMX1B-204ENST00000561065 ZNF471Q9BX82 626 aaPredicted RBP11.15□□□□□ -0.62
LMX1B-204ENST00000561065 CYTL1Q9NRR1 136 aa11.15□□□□□ -0.62
LMX1B-204ENST00000561065 TRGV1A0A0A0MS02 117 aa11.14□□□□□ -0.63
LMX1B-204ENST00000561065 SMLR1H3BR10 107 aa11.14□□□□□ -0.63
LMX1B-204ENST00000561065 NUDT3O95989 172 aa11.14□□□□□ -0.63
LMX1B-204ENST00000561065 CCL18P55774 89 aa11.14□□□□□ -0.63
LMX1B-204ENST00000561065 PRR9Q5T870 116 aa11.14□□□□□ -0.63
LMX1B-204ENST00000561065 DPPA3Q6W0C5 159 aa11.14□□□□□ -0.63
LMX1B-204ENST00000561065 HIST1H2BAQ96A08 127 aa11.14□□□□□ -0.63
LMX1B-204ENST00000561065 TCEAL7Q9BRU2 100 aa11.14□□□□□ -0.63
LMX1B-204ENST00000561065 MAP1LC3B2A6NCE7 125 aa11.13□□□□□ -0.63
LMX1B-204ENST00000561065 H3BNG1 76 aa11.13□□□□□ -0.63
LMX1B-204ENST00000561065 BCL2L11O43521 198 aa11.13□□□□□ -0.63
LMX1B-204ENST00000561065 HOXA5P20719 270 aa11.13□□□□□ -0.63
LMX1B-204ENST00000561065 ZNRF2Q8NHG8 242 aa11.13□□□□□ -0.63
LMX1B-204ENST00000561065 MAP1LC3BQ9GZQ8 125 aa11.13□□□□□ -0.63
LMX1B-204ENST00000561065 KLF12Q9Y4X4 402 aa11.13□□□□□ -0.63
LMX1B-204ENST00000561065 TEX46H3BTG2 121 aa11.12□□□□□ -0.63
LMX1B-204ENST00000561065 SPINK4O60575 86 aa11.12□□□□□ -0.63
LMX1B-204ENST00000561065 TPT1P13693 172 aaKnown RBP11.12□□□□□ -0.63
LMX1B-204ENST00000561065 FLI1Q01543 452 aaPredicted RBP11.12□□□□□ -0.63
LMX1B-204ENST00000561065 TDRG1Q3Y452 100 aa11.12□□□□□ -0.63
LMX1B-204ENST00000561065 LGALSLQ3ZCW2 172 aaPredicted RBP11.12□□□□□ -0.63
LMX1B-204ENST00000561065 SMUG1Q53HV7 270 aa11.12□□□□□ -0.63
LMX1B-204ENST00000561065 Q6ZQT7 251 aa11.12□□□□□ -0.63
LMX1B-204ENST00000561065 TMEM75Q8N9X5 138 aa11.12□□□□□ -0.63
LMX1B-204ENST00000561065 C11orf72Q8NBR9 251 aa11.12□□□□□ -0.63
LMX1B-204ENST00000561065 KRTAP17-1Q9BYP8 105 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms