RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 DEFA1P59665 94 aa7.05□□□□□ -1.28
LDLR-214ENST00000560628 DEFA3P59666 94 aa7.05□□□□□ -1.28
LDLR-214ENST00000560628 UBE2L3P68036 154 aaKnown RBP7.05□□□□□ -1.28
LDLR-214ENST00000560628 IBA57Q5T440 356 aaKnown RBP7.05□□□□□ -1.28
LDLR-214ENST00000560628 C18orf15Q96N68 181 aa7.05□□□□□ -1.28
LDLR-214ENST00000560628 UPK3BQ9BT76 320 aa7.05□□□□□ -1.28
LDLR-214ENST00000560628 MDFICQ9P1T7 246 aa7.05□□□□□ -1.28
LDLR-214ENST00000560628 MBD2Q9UBB5 411 aa7.05□□□□□ -1.28
LDLR-214ENST00000560628 MRPS16Q9Y3D3 137 aaKnown RBP7.05□□□□□ -1.28
LDLR-214ENST00000560628 PGPA6NDG6 321 aa7.04□□□□□ -1.28
LDLR-214ENST00000560628 DIRC3C9JPN6 131 aa7.04□□□□□ -1.28
LDLR-214ENST00000560628 ZNF266Q14584 549 aa7.04□□□□□ -1.28
LDLR-214ENST00000560628 TTC32Q5I0X7 151 aa7.04□□□□□ -1.28
LDLR-214ENST00000560628 LYPD1Q8N2G4 141 aa7.04□□□□□ -1.28
LDLR-214ENST00000560628 ST6GAL2Q96JF0 529 aa7.04□□□□□ -1.28
LDLR-214ENST00000560628 C8orf49Q96NF6 230 aa7.04□□□□□ -1.28
LDLR-214ENST00000560628 KRTAP4-5Q9BYR2 181 aa7.04□□□□□ -1.28
LDLR-214ENST00000560628 RPH3ALQ9UNE2 315 aa7.04□□□□□ -1.28
LDLR-214ENST00000560628 PKD1P98161 4303 aa7.04□□□□□ -1.28
LDLR-214ENST00000560628 RBAKDNA6NC62 111 aa7.03□□□□□ -1.28
LDLR-214ENST00000560628 HMGB3O15347 200 aaKnown RBP7.03□□□□□ -1.28
LDLR-214ENST00000560628 PET100P0DJ07 73 aa7.03□□□□□ -1.28
LDLR-214ENST00000560628 TAS2R45P59539 299 aa7.03□□□□□ -1.28
LDLR-214ENST00000560628 ZNF415Q09FC8 603 aa7.03□□□□□ -1.28
LDLR-214ENST00000560628 FHL2Q14192 279 aa7.03□□□□□ -1.28
LDLR-214ENST00000560628 KHDC3LQ587J8 217 aa7.03□□□□□ -1.28
LDLR-214ENST00000560628 SPATA12Q7Z6I5 190 aa7.03□□□□□ -1.28
LDLR-214ENST00000560628 HHLA3Q9XRX5 114 aa7.03□□□□□ -1.28
LDLR-214ENST00000560628 ICOSQ9Y6W8 199 aa7.03□□□□□ -1.28
LDLR-214ENST00000560628 DYNC1H1Q14204 4646 aaKnown RBP7.03□□□□□ -1.28
LDLR-214ENST00000560628 TRBV7-9A0A0J9YWB2 115 aa7.02□□□□□ -1.29
LDLR-214ENST00000560628 A0A1W2PPV4 95 aa7.02□□□□□ -1.29
LDLR-214ENST00000560628 SFTA3P0C7M3 94 aa7.02□□□□□ -1.29
LDLR-214ENST00000560628 CRYBA4P53673 196 aa7.02□□□□□ -1.29
LDLR-214ENST00000560628 RAB2AP61019 212 aa7.02□□□□□ -1.29
LDLR-214ENST00000560628 TMEM183BQ1AE95 376 aa7.02□□□□□ -1.29
LDLR-214ENST00000560628 ACOT6Q3I5F7 207 aaPredicted RBP7.02□□□□□ -1.29
LDLR-214ENST00000560628 TMEM183AQ8IXX5 376 aa7.02□□□□□ -1.29
LDLR-214ENST00000560628 CMTM2Q8TAZ6 248 aa7.02□□□□□ -1.29
LDLR-214ENST00000560628 OTORQ9NRC9 128 aa7.02□□□□□ -1.29
LDLR-214ENST00000560628 PRO0255Q9UI72 69 aa7.02□□□□□ -1.29
LDLR-214ENST00000560628 NAGKQ9UJ70 344 aa7.02□□□□□ -1.29
LDLR-214ENST00000560628 DNAH11Q96DT5 4516 aa7.02□□□□□ -1.29
LDLR-214ENST00000560628 PCLOQ9Y6V0 5065 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 TRGV4A0A0C4DH28 118 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 A0A1W2PPQ1 181 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 SIVA1O15304 175 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 GNRH2O43555 120 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 NXPH4O95158 308 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 SLAQ13239 276 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 Q6AWC8 147 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 LYPD5Q6UWN5 251 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 FAM159AQ6UWV7 190 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 GOLT1AQ6ZVE7 132 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 ZNF479Q96JC4 524 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 TNFRSF18Q9Y5U5 241 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 ALG5Q9Y673 324 aa7.01□□□□□ -1.29
LDLR-214ENST00000560628 TRAV8-1A0A0A6YYK1 113 aa7□□□□□ -1.29
LDLR-214ENST00000560628 F6UZH7 168 aa7□□□□□ -1.29
LDLR-214ENST00000560628 LINC00315P59091 139 aa7□□□□□ -1.29
LDLR-214ENST00000560628 KRTAP10-2P60368 255 aa7□□□□□ -1.29
LDLR-214ENST00000560628 GNG5P63218 68 aa7□□□□□ -1.29
LDLR-214ENST00000560628 MRPL23Q16540 153 aaKnown RBP7□□□□□ -1.29
LDLR-214ENST00000560628 FAM74A1Q5RGS3 127 aa7□□□□□ -1.29
LDLR-214ENST00000560628 OR10G4Q8NGN3 311 aa7□□□□□ -1.29
LDLR-214ENST00000560628 OR10G9Q8NGN4 311 aa7□□□□□ -1.29
LDLR-214ENST00000560628 OR10G7Q8NGN6 311 aa7□□□□□ -1.29
LDLR-214ENST00000560628 TVP23CQ96ET8 276 aa7□□□□□ -1.29
LDLR-214ENST00000560628 SGK494Q96LW2 274 aa7□□□□□ -1.29
LDLR-214ENST00000560628 LENEPQ9Y5L5 61 aa7□□□□□ -1.29
LDLR-214ENST00000560628 TRGV11A0A075B6L2 103 aa6.99□□□□□ -1.29
LDLR-214ENST00000560628 PQLC2Q6ZP29 291 aa6.99□□□□□ -1.29
LDLR-214ENST00000560628 NEGR1Q7Z3B1 354 aa6.99□□□□□ -1.29
LDLR-214ENST00000560628 HSD17B11Q8NBQ5 300 aa6.99□□□□□ -1.29
LDLR-214ENST00000560628 RASL10AQ92737 203 aa6.99□□□□□ -1.29
LDLR-214ENST00000560628 SPXQ9BT56 116 aa6.99□□□□□ -1.29
LDLR-214ENST00000560628 TREM1Q9NP99 234 aa6.99□□□□□ -1.29
LDLR-214ENST00000560628 IGHV3-16A0A0C4DH30 117 aa6.98□□□□□ -1.29
LDLR-214ENST00000560628 K7EQD1 137 aa6.98□□□□□ -1.29
LDLR-214ENST00000560628 CDK2AP2O75956 126 aa6.98□□□□□ -1.29
LDLR-214ENST00000560628 ARL14EPLP0DKL9 152 aa6.98□□□□□ -1.29
LDLR-214ENST00000560628 GYPEP15421 78 aa6.98□□□□□ -1.29
LDLR-214ENST00000560628 FUSP35637 526 aaKnown RBP eCLIP6.98□□□□□ -1.29
LDLR-214ENST00000560628 Q5BKY6 102 aa6.98□□□□□ -1.29
LDLR-214ENST00000560628 IQCF2Q8IXL9 164 aa6.98□□□□□ -1.29
LDLR-214ENST00000560628 OR4C5Q8NGB2 326 aa6.98□□□□□ -1.29
LDLR-214ENST00000560628 TMED6Q8WW62 240 aa6.98□□□□□ -1.29
LDLR-214ENST00000560628 TRAV21A0A0B4J279 112 aa6.97□□□□□ -1.29
LDLR-214ENST00000560628 LOC100131303A0A0U1RQF7 123 aa6.97□□□□□ -1.29
LDLR-214ENST00000560628 M0R2P5 195 aa6.97□□□□□ -1.29
LDLR-214ENST00000560628 BTF3P20290 206 aaKnown RBP6.97□□□□□ -1.29
LDLR-214ENST00000560628 SRIP30626 198 aa6.97□□□□□ -1.29
LDLR-214ENST00000560628 CDC34P49427 236 aaPredicted RBP6.97□□□□□ -1.29
LDLR-214ENST00000560628 TDRG1Q3Y452 100 aa6.97□□□□□ -1.29
LDLR-214ENST00000560628 Q6ZRN7 208 aaPredicted RBP6.97□□□□□ -1.29
LDLR-214ENST00000560628 MAPKAPK5-AS1Q8N8E1 139 aa6.97□□□□□ -1.29
LDLR-214ENST00000560628 PCNPQ8WW12 178 aaKnown RBP6.97□□□□□ -1.29
LDLR-214ENST00000560628 RAB24Q969Q5 203 aa6.97□□□□□ -1.29
LDLR-214ENST00000560628 MED28Q9H204 178 aa6.97□□□□□ -1.29
LDLR-214ENST00000560628 TRAV4A0A0B4J268 109 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms