RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 M0R3E3 92 aa10.32□□□□□ -0.76
LDLR-213ENST00000560502 IGLV2-11P01706 119 aa10.32□□□□□ -0.76
LDLR-213ENST00000560502 ID1P41134 155 aa10.32□□□□□ -0.76
LDLR-213ENST00000560502 KCNIP4Q6PIL6 250 aa10.32□□□□□ -0.76
LDLR-213ENST00000560502 COX8CQ7Z4L0 72 aa10.32□□□□□ -0.76
LDLR-213ENST00000560502 LINC00479Q96M42 142 aa10.32□□□□□ -0.76
LDLR-213ENST00000560502 PPP1R14DQ9NXH3 145 aa10.32□□□□□ -0.76
LDLR-213ENST00000560502 PSG8Q9UQ74 426 aa10.32□□□□□ -0.76
LDLR-213ENST00000560502 TRAV9-1A0A075B6T8 112 aa10.31□□□□□ -0.76
LDLR-213ENST00000560502 TRAV8-2A0A0B4J237 113 aa10.31□□□□□ -0.76
LDLR-213ENST00000560502 TRAV34A0A0B4J273 112 aa10.31□□□□□ -0.76
LDLR-213ENST00000560502 A0A0J9YWU9 116 aa10.31□□□□□ -0.76
LDLR-213ENST00000560502 NUPR2A6NF83 97 aa10.31□□□□□ -0.76
LDLR-213ENST00000560502 PGPEP1LA6NFU8 196 aa10.31□□□□□ -0.76
LDLR-213ENST00000560502 LY6G6CO95867 125 aa10.31□□□□□ -0.76
LDLR-213ENST00000560502 ERVFC1-1P60608 527 aa10.31□□□□□ -0.76
LDLR-213ENST00000560502 NDFIP1Q9BT67 221 aa10.31□□□□□ -0.76
LDLR-213ENST00000560502 TP53TG1Q9Y2A0 90 aa10.31□□□□□ -0.76
LDLR-213ENST00000560502 LENEPQ9Y5L5 61 aa10.31□□□□□ -0.76
LDLR-213ENST00000560502 DNAH10Q8IVF4 4471 aa10.31□□□□□ -0.76
LDLR-213ENST00000560502 MGST1P10620 155 aaKnown RBP10.3□□□□□ -0.76
LDLR-213ENST00000560502 RPL11P62913 178 aaKnown RBP10.3□□□□□ -0.76
LDLR-213ENST00000560502 PAFAH1B2P68402 229 aa10.3□□□□□ -0.76
LDLR-213ENST00000560502 IBA57Q5T440 356 aaKnown RBP10.3□□□□□ -0.76
LDLR-213ENST00000560502 Q6ZWC4 215 aa10.3□□□□□ -0.76
LDLR-213ENST00000560502 YPEL4Q96NS1 127 aa10.3□□□□□ -0.76
LDLR-213ENST00000560502 HERC2O95714 4834 aa10.3□□□□□ -0.76
LDLR-213ENST00000560502 KMT2AQ03164 3969 aa10.29□□□□□ -0.76
LDLR-213ENST00000560502 TRBV24-1A0A075B6N3 115 aa10.29□□□□□ -0.76
LDLR-213ENST00000560502 TRBV7-9A0A0J9YWB2 115 aa10.29□□□□□ -0.76
LDLR-213ENST00000560502 CT45A10P0DMU9 189 aa10.29□□□□□ -0.76
LDLR-213ENST00000560502 RPL19P84098 196 aaKnown RBP10.29□□□□□ -0.76
LDLR-213ENST00000560502 CT83Q5H943 113 aa10.29□□□□□ -0.76
LDLR-213ENST00000560502 CEMP1Q6PRD7 247 aaPredicted RBP10.29□□□□□ -0.76
LDLR-213ENST00000560502 C9orf47Q6ZRZ4 202 aa10.29□□□□□ -0.76
LDLR-213ENST00000560502 PRNTQ86SH4 94 aa10.29□□□□□ -0.76
LDLR-213ENST00000560502 OR4B1Q8NGF8 309 aa10.29□□□□□ -0.76
LDLR-213ENST00000560502 DCANP1Q8TF63 244 aa10.29□□□□□ -0.76
LDLR-213ENST00000560502 IGKV2-40A0A087WW87 121 aaPredicted RBP10.28□□□□□ -0.76
LDLR-213ENST00000560502 TRAV8-1A0A0A6YYK1 113 aa10.28□□□□□ -0.76
LDLR-213ENST00000560502 COLCA2A8K830 154 aa10.28□□□□□ -0.76
LDLR-213ENST00000560502 IGKV2D-40P01614 121 aaPredicted RBP10.28□□□□□ -0.76
LDLR-213ENST00000560502 SNRPD3P62318 126 aaKnown RBP10.28□□□□□ -0.76
LDLR-213ENST00000560502 ELOBQ15370 118 aa10.28□□□□□ -0.76
LDLR-213ENST00000560502 GBGT1Q8N5D6 347 aa10.28□□□□□ -0.76
LDLR-213ENST00000560502 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.28□□□□□ -0.76
LDLR-213ENST00000560502 ZNF738Q8NE65 137 aa10.28□□□□□ -0.76
LDLR-213ENST00000560502 SPAG8Q99932 426 aaPredicted RBP10.28□□□□□ -0.76
LDLR-213ENST00000560502 IL36BQ9NZH7 164 aa10.28□□□□□ -0.76
LDLR-213ENST00000560502 K7EQG2 157 aa10.27□□□□□ -0.77
LDLR-213ENST00000560502 SPRY2O43597 315 aa10.27□□□□□ -0.77
LDLR-213ENST00000560502 PFN1P07737 140 aaKnown RBP10.27□□□□□ -0.77
LDLR-213ENST00000560502 APOC4P55056 127 aa10.27□□□□□ -0.77
LDLR-213ENST00000560502 DEFB135Q30KP9 77 aa10.27□□□□□ -0.77
LDLR-213ENST00000560502 ODF3L2Q3SX64 289 aa10.27□□□□□ -0.77
LDLR-213ENST00000560502 TMEM78Q5T7P6 136 aa10.27□□□□□ -0.77
LDLR-213ENST00000560502 RBPMS2Q6ZRY4 209 aaKnown RBP10.27□□□□□ -0.77
LDLR-213ENST00000560502 RNF182Q8N6D2 247 aa10.27□□□□□ -0.77
LDLR-213ENST00000560502 OR10J6PQ8NGY7 276 aa10.27□□□□□ -0.77
LDLR-213ENST00000560502 DAZAP1Q96EP5 407 aaKnown RBP10.27□□□□□ -0.77
LDLR-213ENST00000560502 LINC00477Q96M19 166 aa10.27□□□□□ -0.77
LDLR-213ENST00000560502 PYGO2Q9BRQ0 406 aa10.27□□□□□ -0.77
LDLR-213ENST00000560502 MS4A6AQ9H2W1 248 aa10.27□□□□□ -0.77
LDLR-213ENST00000560502 V9GYV3 84 aa10.27□□□□□ -0.77
LDLR-213ENST00000560502 KIR2DL5BA0A0G2JN68 375 aa10.26□□□□□ -0.77
LDLR-213ENST00000560502 KIR2DL5BA0A0G2JPC4 375 aa10.26□□□□□ -0.77
LDLR-213ENST00000560502 C19orf71A6NCJ1 209 aa10.26□□□□□ -0.77
LDLR-213ENST00000560502 NPIPB6E9PJ23 425 aa10.26□□□□□ -0.77
LDLR-213ENST00000560502 UBE2CO00762 179 aa10.26□□□□□ -0.77
LDLR-213ENST00000560502 GATCO43716 136 aaKnown RBP10.26□□□□□ -0.77
LDLR-213ENST00000560502 HLA-DMBP28068 263 aa10.26□□□□□ -0.77
LDLR-213ENST00000560502 ZNF138P52744 262 aa10.26□□□□□ -0.77
LDLR-213ENST00000560502 OR5I1Q13606 314 aa10.26□□□□□ -0.77
LDLR-213ENST00000560502 KIR2DL5AQ8N109 375 aa10.26□□□□□ -0.77
LDLR-213ENST00000560502 FAM24BQ8N5W8 94 aa10.26□□□□□ -0.77
LDLR-213ENST00000560502 KIR2DL5BQ8NHK3 375 aa10.26□□□□□ -0.77
LDLR-213ENST00000560502 RNF183Q96D59 192 aa10.26□□□□□ -0.77
LDLR-213ENST00000560502 FAM231BA6NCW3 169 aa10.25□□□□□ -0.77
LDLR-213ENST00000560502 ZNF705GA8MUZ8 300 aaPredicted RBP10.25□□□□□ -0.77
LDLR-213ENST00000560502 ZNF705FA8MVS1 300 aaPredicted RBP10.25□□□□□ -0.77
LDLR-213ENST00000560502 P01737 135 aa10.25□□□□□ -0.77
LDLR-213ENST00000560502 RAB5AP20339 215 aa10.25□□□□□ -0.77
LDLR-213ENST00000560502 SMUG1Q53HV7 270 aa10.25□□□□□ -0.77
LDLR-213ENST00000560502 IGFL4Q6B9Z1 124 aa10.25□□□□□ -0.77
LDLR-213ENST00000560502 NHLRC2Q8NBF2 726 aa10.25□□□□□ -0.77
LDLR-213ENST00000560502 GFRA4Q9GZZ7 299 aa10.25□□□□□ -0.77
LDLR-213ENST00000560502 RNASE7Q9H1E1 156 aaKnown RBP10.25□□□□□ -0.77
LDLR-213ENST00000560502 RPP21Q9H633 154 aaKnown RBP10.25□□□□□ -0.77
LDLR-213ENST00000560502 A8MWL6 223 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 TYMSP04818 313 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 FAM162BQ5T6X4 162 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 PRR27Q6MZM9 219 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 NUDT10Q8NFP7 164 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 NUDT11Q96G61 164 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 ZC2HC1AQ96GY0 325 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 FAM210BQ96KR6 192 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 C20orf173Q96LM9 149 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 SGK494Q96LW2 274 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 ODF3Q96PU9 254 aa10.24□□□□□ -0.77
LDLR-213ENST00000560502 VGLL1Q99990 258 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms