RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 INSP01308 110 aa5.65□□□□□ -1.5
USP3-210ENST00000559192 EIF4EBP1Q13541 118 aaPredicted RBP5.65□□□□□ -1.5
USP3-210ENST00000559192 SPXQ9BT56 116 aa5.65□□□□□ -1.5
USP3-210ENST00000559192 U3KQE9 123 aa5.65□□□□□ -1.5
USP3-210ENST00000559192 ATG2AQ2TAZ0 1938 aa5.65□□□□□ -1.5
USP3-210ENST00000559192 MBD3L4A6NDZ8 208 aaPredicted RBP5.65□□□□□ -1.51
USP3-210ENST00000559192 MBD3L3A6NE82 208 aaPredicted RBP5.65□□□□□ -1.51
USP3-210ENST00000559192 MBD3L5A6NJ08 208 aaPredicted RBP5.65□□□□□ -1.51
USP3-210ENST00000559192 IGHV3-11P01762 117 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 IGHG4P01861 327 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 CEND1Q8N111 149 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 MBD3L2Q8NHZ7 208 aaPredicted RBP5.65□□□□□ -1.51
USP3-210ENST00000559192 TIMM21Q9BVV7 248 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 AHCTF1Q8WYP5 2266 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 FAM236AA0A1B0GUQ0 79 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 FAM236BA0A1B0GV22 79 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 C22orf46C9J442 243 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 LY6HO94772 140 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 SRD5A1P18405 259 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 LINC00310P59036 64 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 C15orf32Q32M92 178 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 LYPD1Q8N2G4 141 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 RASL10AQ92737 203 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 MRPL36Q9P0J6 103 aaKnown RBP5.65□□□□□ -1.51
USP3-210ENST00000559192 ZNF407Q9C0G0 2248 aa5.65□□□□□ -1.51
USP3-210ENST00000559192 A0A0G2JNJ9 132 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 A0A0U1RQV1 116 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 H3BRN7 92 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 SLC50A1Q9BRV3 221 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 Q9UFV3 132 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 LRP4O75096 1905 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 PROP1O75360 226 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 PRB1P04280 392 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 GP9P14770 177 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 SLC25A16P16260 332 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 RBX1P62877 108 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 PRO1854Q9UHT4 67 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 GATA4P43694 442 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 LINC01545Q5VT33 79 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 EML6Q6ZMW3 1958 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.64□□□□□ -1.51
USP3-210ENST00000559192 ADARB2-AS1A8MUL3 147 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 ATOX1O00244 68 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 HLA-DMBP28068 263 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 LINC00322Q6ZN03 302 aaPredicted RBP5.64□□□□□ -1.51
USP3-210ENST00000559192 TTTY13Q9BZ97 58 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 A0A1B0GX51 115 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 IGLC1P0CG04 106 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 SIGLEC15Q6ZMC9 328 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 SPATA12Q7Z6I5 190 aa5.64□□□□□ -1.51
USP3-210ENST00000559192 C14orf178Q8N769 122 aaPredicted RBP5.64□□□□□ -1.51
USP3-210ENST00000559192 WISP2O76076 250 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 PRB2P02812 416 aaPredicted RBP5.63□□□□□ -1.51
USP3-210ENST00000559192 VMO1Q7Z5L0 202 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 PRIMA1Q86XR5 153 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 TMEM14CQ9P0S9 112 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 C12orf74Q32Q52 190 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 MRPL35Q9NZE8 188 aaKnown RBP5.63□□□□□ -1.51
USP3-210ENST00000559192 TINCRA0A1B0GVN0 87 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 F8WEM9 126 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 GATA1P15976 413 aaPredicted RBP5.63□□□□□ -1.51
USP3-210ENST00000559192 LOXP28300 417 aaPredicted RBP5.63□□□□□ -1.51
USP3-210ENST00000559192 C3orf36Q3SXR2 165 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 LINC01587Q99440 93 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 DOCK7Q96N67 2140 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 TRGV2A0A075B6R0 118 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 LHBP01229 141 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 EFNA4P52798 201 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 ZNF876PQ49A33 203 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 TEX36Q5VZQ5 186 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 RNF183Q96D59 192 aa5.63□□□□□ -1.51
USP3-210ENST00000559192 TAL2Q16559 108 aa5.62□□□□□ -1.51
USP3-210ENST00000559192 C5orf64Q2M2E5 130 aa5.62□□□□□ -1.51
USP3-210ENST00000559192 PRR25Q96S07 402 aa5.62□□□□□ -1.51
USP3-210ENST00000559192 PI4KAP42356 2102 aa5.62□□□□□ -1.51
USP3-210ENST00000559192 Q8N8P6 123 aa5.62□□□□□ -1.51
USP3-210ENST00000559192 EGR2P11161 476 aaPredicted RBP5.62□□□□□ -1.51
USP3-210ENST00000559192 SRSF2Q01130 221 aaKnown RBP5.62□□□□□ -1.51
USP3-210ENST00000559192 LOXL1Q08397 574 aaPredicted RBP5.62□□□□□ -1.51
USP3-210ENST00000559192 ZNF672Q499Z4 452 aaPredicted RBP5.62□□□□□ -1.51
USP3-210ENST00000559192 MSMPQ1L6U9 139 aa5.62□□□□□ -1.51
USP3-210ENST00000559192 DTX2Q86UW9 622 aa5.62□□□□□ -1.51
USP3-210ENST00000559192 G3V4G9 280 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 VCYO14598 125 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 TMEM219Q86XT9 240 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 Q8N976 141 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 CLPSL1A2RUU4 121 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 SIVA1O15304 175 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 PDE6HQ13956 83 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 Q8N7P7 452 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 SPTSSBQ8NFR3 76 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 SPATA25Q9BR10 227 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 SPRY2O43597 315 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 ACYP1P07311 99 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 NBL1P41271 181 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 FXYD2P54710 66 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 CHCHD5Q9BSY4 110 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 MSRB1Q9NZV6 116 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 IGLV3-9A0A075B6K5 115 aa5.61□□□□□ -1.51
USP3-210ENST00000559192 A0A1B0GXF2 115 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms