RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 KRTAP9-4Q9BYQ2 154 aa6.59□□□□□ -1.35
SYNE2-224ENST00000557024 MANBALQ9NQG1 85 aa6.59□□□□□ -1.35
SYNE2-224ENST00000557024 ZNF586Q9NXT0 402 aa6.59□□□□□ -1.35
SYNE2-224ENST00000557024 GNG13Q9P2W3 67 aa6.59□□□□□ -1.35
SYNE2-224ENST00000557024 XCL2Q9UBD3 114 aa6.59□□□□□ -1.35
SYNE2-224ENST00000557024 TRBV19A0A075B6N1 114 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 NBDYA0A0U1RRE5 68 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 PGPA6NDG6 321 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 H3BQ15 152 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 K7EQG2 157 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 MRPS12O15235 138 aaKnown RBP6.58□□□□□ -1.36
SYNE2-224ENST00000557024 IGLC2P0DOY2 106 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 CSN1S1P47710 185 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 KRTAP10-2P60368 255 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 RANP62826 216 aaKnown RBP6.58□□□□□ -1.36
SYNE2-224ENST00000557024 PDE6HQ13956 83 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 TMEM88Q6PEY1 159 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 CMTM2Q8TAZ6 248 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 C17orf77Q96MU5 243 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 LINC00052Q96N35 136 aa6.58□□□□□ -1.36
SYNE2-224ENST00000557024 SRRM2Q9UQ35 2752 aaKnown RBP6.57□□□□□ -1.36
SYNE2-224ENST00000557024 A0A1W2PRE2 83 aa6.57□□□□□ -1.36
SYNE2-224ENST00000557024 PAGE4O60829 102 aa6.57□□□□□ -1.36
SYNE2-224ENST00000557024 ZNF253O75346 499 aa6.57□□□□□ -1.36
SYNE2-224ENST00000557024 SLC25A5P05141 298 aaKnown RBP6.57□□□□□ -1.36
SYNE2-224ENST00000557024 NMBP08949 121 aa6.57□□□□□ -1.36
SYNE2-224ENST00000557024 TAGLN2P37802 199 aaKnown RBP6.57□□□□□ -1.36
SYNE2-224ENST00000557024 FAM3BP58499 235 aaPredicted RBP6.57□□□□□ -1.36
SYNE2-224ENST00000557024 ICAM4Q14773 271 aa6.57□□□□□ -1.36
SYNE2-224ENST00000557024 CLLU1Q5K131 121 aa6.57□□□□□ -1.36
SYNE2-224ENST00000557024 LYPD1Q8N2G4 141 aa6.57□□□□□ -1.36
SYNE2-224ENST00000557024 ATG101Q9BSB4 218 aa6.57□□□□□ -1.36
SYNE2-224ENST00000557024 NKX6-2Q9C056 277 aaPredicted RBP6.57□□□□□ -1.36
SYNE2-224ENST00000557024 EIF5A2Q9GZV4 153 aaKnown RBP6.57□□□□□ -1.36
SYNE2-224ENST00000557024 Q9H3A6 140 aa6.57□□□□□ -1.36
SYNE2-224ENST00000557024 ZNF331Q9NQX6 463 aaPredicted RBP6.57□□□□□ -1.36
SYNE2-224ENST00000557024 OTORQ9NRC9 128 aa6.57□□□□□ -1.36
SYNE2-224ENST00000557024 RPH3ALQ9UNE2 315 aa6.57□□□□□ -1.36
SYNE2-224ENST00000557024 PRELID1Q9Y255 219 aa6.57□□□□□ -1.36
SYNE2-224ENST00000557024 IGHV3OR16-12A0A075B7B8 117 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 F6UZH7 168 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 ISLRO14498 428 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 CCL20P78556 96 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 PSMG4Q5JS54 123 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 FAM222AQ5U5X8 452 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 IGFL4Q6B9Z1 124 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 EXOC3-AS1Q8N2X6 119 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 ZNF738Q8NE65 137 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 RXFP4Q8TDU9 374 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 DCANP1Q8TF63 244 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 TXNDC17Q9BRA2 123 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 NIPSNAP3BQ9BS92 247 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 C1QTNF4Q9BXJ3 329 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 DKK2Q9UBU2 259 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 ARL2-SNX15V9GYD0 113 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 DNAH5Q8TE73 4624 aa6.56□□□□□ -1.36
SYNE2-224ENST00000557024 MYCBP2O75592 4640 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 TMEM189A5PLL7 270 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 RBFOX3A6NFN3 312 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 FAM74A7A6NL05 159 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 K7EQM0 130 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 SLC17A3O00476 420 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 NDUFB4O95168 129 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 BCL2P10415 239 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 NUTF2P61970 127 aaKnown RBP6.55□□□□□ -1.36
SYNE2-224ENST00000557024 PEA15Q15121 130 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 PSG3Q16557 428 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 EBLN2Q6P2I7 272 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 ZNF705AQ6ZN79 300 aaPredicted RBP6.55□□□□□ -1.36
SYNE2-224ENST00000557024 RNF182Q8N6D2 247 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 ZNRF2Q8NHG8 242 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 LYPD6BQ8NI32 183 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 SUN5Q8TC36 379 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 VAX2Q9UIW0 290 aa6.55□□□□□ -1.36
SYNE2-224ENST00000557024 TEX48A0A1B0GUV7 120 aa6.54□□□□□ -1.36
SYNE2-224ENST00000557024 ZNF705FA8MVS1 300 aaPredicted RBP6.54□□□□□ -1.36
SYNE2-224ENST00000557024 ZNF705DP0CH99 300 aaPredicted RBP6.54□□□□□ -1.36
SYNE2-224ENST00000557024 ZNF705BP0CI00 300 aaPredicted RBP6.54□□□□□ -1.36
SYNE2-224ENST00000557024 ATP5G3P48201 142 aa6.54□□□□□ -1.36
SYNE2-224ENST00000557024 Q5VSD8 79 aa6.54□□□□□ -1.36
SYNE2-224ENST00000557024 C5orf17Q8NAS9 161 aa6.54□□□□□ -1.36
SYNE2-224ENST00000557024 RPUSD4Q96CM3 377 aaKnown RBP6.54□□□□□ -1.36
SYNE2-224ENST00000557024 MRPL53Q96EL3 112 aaKnown RBP6.54□□□□□ -1.36
SYNE2-224ENST00000557024 C18orf15Q96N68 181 aa6.54□□□□□ -1.36
SYNE2-224ENST00000557024 FAM210AQ96ND0 272 aa6.54□□□□□ -1.36
SYNE2-224ENST00000557024 NEU1Q99519 415 aa6.54□□□□□ -1.36
SYNE2-224ENST00000557024 TREM1Q9NP99 234 aa6.54□□□□□ -1.36
SYNE2-224ENST00000557024 PPP1R14DQ9NXH3 145 aa6.54□□□□□ -1.36
SYNE2-224ENST00000557024 YTHDF2Q9Y5A9 579 aaKnown RBP6.54□□□□□ -1.36
SYNE2-224ENST00000557024 NACAE9PAV3 2078 aa6.53□□□□□ -1.36
SYNE2-224ENST00000557024 TRAV8-2A0A0B4J237 113 aa6.53□□□□□ -1.36
SYNE2-224ENST00000557024 LOC102723971A0A1B0GUV8 181 aa6.53□□□□□ -1.36
SYNE2-224ENST00000557024 SOCS3O14543 225 aa6.53□□□□□ -1.36
SYNE2-224ENST00000557024 AKR1C3P42330 323 aa6.53□□□□□ -1.36
SYNE2-224ENST00000557024 CEBPGP53567 150 aa6.53□□□□□ -1.36
SYNE2-224ENST00000557024 FXYD7P58549 80 aa6.53□□□□□ -1.36
SYNE2-224ENST00000557024 MEF2BQ02080 365 aaPredicted RBP6.53□□□□□ -1.36
SYNE2-224ENST00000557024 ZNF506Q5JVG8 444 aa6.53□□□□□ -1.36
SYNE2-224ENST00000557024 C15orf53Q8NAA6 179 aa6.53□□□□□ -1.36
SYNE2-224ENST00000557024 OR10J6PQ8NGY7 276 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms