RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 F6UB75 175 aa11.63□□□□□ -0.55
CUX1-215ENST00000556210 HSD52Q0P140 79 aa11.63□□□□□ -0.55
CUX1-215ENST00000556210 Q6AWC8 147 aa11.63□□□□□ -0.55
CUX1-215ENST00000556210 RNF5Q99942 180 aa11.63□□□□□ -0.55
CUX1-215ENST00000556210 GFRA4Q9GZZ7 299 aa11.63□□□□□ -0.55
CUX1-215ENST00000556210 LINC00574Q9H8X3 128 aa11.63□□□□□ -0.55
CUX1-215ENST00000556210 SIGLEC15Q6ZMC9 328 aa11.63□□□□□ -0.55
CUX1-215ENST00000556210 PRR25Q96S07 402 aa11.63□□□□□ -0.55
CUX1-215ENST00000556210 A0A1B0GW15 77 aa11.62□□□□□ -0.55
CUX1-215ENST00000556210 EGR2P11161 476 aaPredicted RBP11.62□□□□□ -0.55
CUX1-215ENST00000556210 MBD6Q96DN6 1003 aa11.62□□□□□ -0.55
CUX1-215ENST00000556210 IGHV7-81A0A0B4J1V7 117 aa11.62□□□□□ -0.55
CUX1-215ENST00000556210 SAP30O75446 220 aa11.62□□□□□ -0.55
CUX1-215ENST00000556210 TMEM95Q3KNT9 176 aa11.62□□□□□ -0.55
CUX1-215ENST00000556210 VWC2LB2RUY7 222 aa11.61□□□□□ -0.55
CUX1-215ENST00000556210 K7EP13 123 aa11.61□□□□□ -0.55
CUX1-215ENST00000556210 OVOL3O00110 214 aa11.61□□□□□ -0.55
CUX1-215ENST00000556210 CTSGP08311 255 aa11.61□□□□□ -0.55
CUX1-215ENST00000556210 ZNF688P0C7X2 276 aa11.61□□□□□ -0.55
CUX1-215ENST00000556210 SPATA12Q7Z6I5 190 aa11.61□□□□□ -0.55
CUX1-215ENST00000556210 OR4X2Q8NGF9 303 aa11.61□□□□□ -0.55
CUX1-215ENST00000556210 DPF1Q92782 380 aa11.61□□□□□ -0.55
CUX1-215ENST00000556210 FANCD2OSQ96PS1 177 aa11.61□□□□□ -0.55
CUX1-215ENST00000556210 HIST1H4GQ99525 98 aa11.61□□□□□ -0.55
CUX1-215ENST00000556210 ZNF747Q9BV97 191 aa11.61□□□□□ -0.55
CUX1-215ENST00000556210 FASNP49327 2511 aaKnown RBP11.61□□□□□ -0.55
CUX1-215ENST00000556210 HOXB4P17483 251 aaPredicted RBP11.61□□□□□ -0.55
CUX1-215ENST00000556210 FAM106AQ4KMX7 169 aa11.6□□□□□ -0.55
CUX1-215ENST00000556210 HAX1O00165 279 aa11.6□□□□□ -0.55
CUX1-215ENST00000556210 EMP1P54849 157 aa11.6□□□□□ -0.55
CUX1-215ENST00000556210 SAMD5Q5TGI4 173 aa11.6□□□□□ -0.55
CUX1-215ENST00000556210 C14orf178Q8N769 122 aaPredicted RBP11.6□□□□□ -0.55
CUX1-215ENST00000556210 PRRC2AP48634 2157 aaKnown RBP11.6□□□□□ -0.55
CUX1-215ENST00000556210 SMAD7O15105 426 aaKnown RBP11.6□□□□□ -0.55
CUX1-215ENST00000556210 BLCAPP62952 87 aa11.6□□□□□ -0.55
CUX1-215ENST00000556210 MINOS1Q5TGZ0 78 aa11.6□□□□□ -0.55
CUX1-215ENST00000556210 GTSCR1Q86UQ5 136 aa11.6□□□□□ -0.55
CUX1-215ENST00000556210 SCRT2Q9NQ03 307 aa11.6□□□□□ -0.55
CUX1-215ENST00000556210 MINOS1-NBL1R4GNA1 71 aa11.6□□□□□ -0.55
CUX1-215ENST00000556210 NPYP01303 97 aa11.59□□□□□ -0.55
CUX1-215ENST00000556210 RPS20P60866 119 aaKnown RBP11.59□□□□□ -0.55
CUX1-215ENST00000556210 ANKRD39Q53RE8 183 aa11.59□□□□□ -0.55
CUX1-215ENST00000556210 A0A1B0GXF2 115 aa11.59□□□□□ -0.55
CUX1-215ENST00000556210 PRB1P04280 392 aa11.59□□□□□ -0.55
CUX1-215ENST00000556210 MRPL51Q4U2R6 128 aaKnown RBP11.59□□□□□ -0.55
CUX1-215ENST00000556210 OR9G4Q8NGQ1 327 aa11.59□□□□□ -0.55
CUX1-215ENST00000556210 CRYGCP07315 174 aa11.59□□□□□ -0.55
CUX1-215ENST00000556210 UBE2E1P51965 193 aa11.59□□□□□ -0.55
CUX1-215ENST00000556210 ZNF256Q9Y2P7 627 aaPredicted RBP11.59□□□□□ -0.55
CUX1-215ENST00000556210 ASH1LQ9NR48 2969 aaKnown RBP11.59□□□□□ -0.55
CUX1-215ENST00000556210 PSMB11A5LHX3 300 aa11.58□□□□□ -0.55
CUX1-215ENST00000556210 C19orf84I3L1E1 186 aa11.58□□□□□ -0.55
CUX1-215ENST00000556210 FAM159AQ6UWV7 190 aa11.58□□□□□ -0.56
CUX1-215ENST00000556210 OR11H6Q8NGC7 330 aa11.58□□□□□ -0.56
CUX1-215ENST00000556210 SIGLEC8Q9NYZ4 499 aa11.58□□□□□ -0.56
CUX1-215ENST00000556210 SMAGPQ0VAQ4 97 aa11.58□□□□□ -0.56
CUX1-215ENST00000556210 SRSF9Q13242 221 aaKnown RBP eCLIP11.58□□□□□ -0.56
CUX1-215ENST00000556210 FOXE3Q13461 319 aa11.58□□□□□ -0.56
CUX1-215ENST00000556210 TNRC6BQ9UPQ9 1833 aaKnown RBP11.58□□□□□ -0.56
CUX1-215ENST00000556210 IGHV4-61A0A0C4DH41 118 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 LOXL1Q08397 574 aaPredicted RBP11.57□□□□□ -0.56
CUX1-215ENST00000556210 C9orf118A6NHY6 69 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 SAMD13Q5VXD3 122 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 C8orf31Q8N9H6 132 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 MOB4Q9Y3A3 225 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 IGLV11-55A0A075B6I3 123 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 A0A1W2PRX2 142 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 CD7P09564 240 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 IGHV4-38-2P0DP08 117 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 PAX2Q02962 417 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 NEGR1Q7Z3B1 354 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 Q8N9W7 124 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 NPFFR1Q9GZQ6 430 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 FAM104BQ5XKR9 115 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 OR5A1Q8NGJ0 315 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 TMEM158Q8WZ71 300 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 TTTY13Q9BZ97 58 aa11.57□□□□□ -0.56
CUX1-215ENST00000556210 RAI1Q7Z5J4 1906 aaPredicted RBP11.56□□□□□ -0.56
CUX1-215ENST00000556210 RAB9AP51151 201 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 OR1N2Q8NGR9 330 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 GTSF1LQ9H1H1 148 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 H3BRM9 83 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 ZNF56Q15929 161 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 LINC01545Q5VT33 79 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 C8orf86Q6ZUL3 223 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 PCP2Q8IVA1 136 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 KLF12Q9Y4X4 402 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 TRAV12-3A0A0B4J271 114 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 A0A1W2PPR1 153 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 PSMG4Q5JS54 123 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 LINC00477Q96M19 166 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 JMJD8Q96S16 334 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 AGPAT4-IT1Q9H0P7 198 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 TMEM14CQ9P0S9 112 aa11.56□□□□□ -0.56
CUX1-215ENST00000556210 LOC107984156A0A0G2JMH3 177 aa11.55□□□□□ -0.56
CUX1-215ENST00000556210 H7C2G1 150 aa11.55□□□□□ -0.56
CUX1-215ENST00000556210 K7EMI3 77 aa11.55□□□□□ -0.56
CUX1-215ENST00000556210 ARL17AQ8IVW1 177 aa11.55□□□□□ -0.56
CUX1-215ENST00000556210 LYPD1Q8N2G4 141 aa11.55□□□□□ -0.56
CUX1-215ENST00000556210 RHPN1-AS1Q9BWJ2 59 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms